DR908274

Overview
NameDR908274
Unique NameDR908274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_VIBCM (Thymidylate synthase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=thyA PE=3 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 8.123e-11
Identity = 32/114 (28.07%), Postives = 48/114 (42.11%), Query Frame = 3 
Query:    3 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGPG 344
            WD NA+           + E D+G VYG Q R +        A   G   DQL  +++ +    +DR  +L+ +NP +  +  L PC     F +    L     QRS D+  G
Sbjct:   82 WDANANLNQAWLNNPYRKGEDDMGRVYGVQGRAW--------AKPDGGHIDQLKKIVDDLSRGVDDRGEILNFYNPGEFHMGCLRPCMYSHHFSLLGDTLYLNSTQRSCDVPLG 187

HSP 2 Score: 40.4318 bits (93), Expect = 8.123e-11
Identity = 21/67 (31.34%), Postives = 37/67 (55.22%), Query Frame = 1 
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE-QLQKLPKPFPILKINPEKK 537
            LG+ FN+    +   ++A +    PG   H I +AH+Y++ +  + + QL++ P P P   INP+ K
Sbjct:  186 LGLNFNMVQVYVFLALMAQITGKKPGLAYHKIVNAHIYQDQLELMRDVQLKREPFPAPQFHINPKIK 252
[Close]
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_VIBCH (Thymidylate synthase OS=Vibrio cholerae GN=thyA PE=3 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 8.123e-11
Identity = 32/114 (28.07%), Postives = 48/114 (42.11%), Query Frame = 3 
Query:    3 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGPG 344
            WD NA+           + E D+G VYG Q R +        A   G   DQL  +++ +    +DR  +L+ +NP +  +  L PC     F +    L     QRS D+  G
Sbjct:   82 WDANANLNQAWLNNPYRKGEDDMGRVYGVQGRAW--------AKPDGGHIDQLKKIVDDLSRGVDDRGEILNFYNPGEFHMGCLRPCMYSHHFSLLGDTLYLNSTQRSCDVPLG 187

HSP 2 Score: 40.4318 bits (93), Expect = 8.123e-11
Identity = 21/67 (31.34%), Postives = 37/67 (55.22%), Query Frame = 1 
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE-QLQKLPKPFPILKINPEKK 537
            LG+ FN+    +   ++A +    PG   H I +AH+Y++ +  + + QL++ P P P   INP+ K
Sbjct:  186 LGLNFNMVQVYVFLALMAQITGKKPGLAYHKIVNAHIYQDQLELMRDVQLKREPFPAPQFHINPKIK 252
[Close]
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_VIBC3 (Thymidylate synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=thyA PE=3 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 8.123e-11
Identity = 32/114 (28.07%), Postives = 48/114 (42.11%), Query Frame = 3 
Query:    3 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGPG 344
            WD NA+           + E D+G VYG Q R +        A   G   DQL  +++ +    +DR  +L+ +NP +  +  L PC     F +    L     QRS D+  G
Sbjct:   82 WDANANLNQAWLNNPYRKGEDDMGRVYGVQGRAW--------AKPDGGHIDQLKKIVDDLSRGVDDRGEILNFYNPGEFHMGCLRPCMYSHHFSLLGDTLYLNSTQRSCDVPLG 187

HSP 2 Score: 40.4318 bits (93), Expect = 8.123e-11
Identity = 21/67 (31.34%), Postives = 37/67 (55.22%), Query Frame = 1 
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE-QLQKLPKPFPILKINPEKK 537
            LG+ FN+    +   ++A +    PG   H I +AH+Y++ +  + + QL++ P P P   INP+ K
Sbjct:  186 LGLNFNMVQVYVFLALMAQITGKKPGLAYHKIVNAHIYQDQLELMRDVQLKREPFPAPQFHINPKIK 252
[Close]
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_VIBVU (Thymidylate synthase OS=Vibrio vulnificus GN=thyA PE=3 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 8.123e-11
Identity = 34/117 (29.06%), Postives = 52/117 (44.44%), Query Frame = 3 
Query:    3 WDGNASREYLDSVGLTD---REEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGPG 344
            WD NA+   L+   L +   + E D+G VYG Q R +        A   G   DQL  +++ +    +DR  +L+ +NP +  +  L PC     F +    L     QRS D+  G
Sbjct:   82 WDANAN---LNDAWLNNPYRKGEDDMGRVYGVQGRAW--------AKPDGGHIDQLRKIVDDLTRGVDDRGEILNFYNPGEFHMGCLRPCMYSHHFSLLGDTLYLNSTQRSCDVPLG 187

HSP 2 Score: 40.817 bits (94), Expect = 8.123e-11
Identity = 21/67 (31.34%), Postives = 35/67 (52.24%), Query Frame = 1 
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE-QLQKLPKPFPILKINPEKK 537
            LG+ FN+    +   ++A +    PG   H I +AH+Y + +  + + QL++ P   P   INPE K
Sbjct:  186 LGLNFNMVQVYVFLAIMAQITGKKPGQAFHKIVNAHIYEDQLALMRDVQLKREPLQAPTFHINPEIK 252
The following BLAST results are available for this feature:
BLAST of DR908274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 394
Match NameE-valueIdentityDescription
TYSY_VIBCM8.123e-1128.07Thymidylate synthase OS=Vibrio cholerae serotype O... [more]
TYSY_VIBCH8.123e-1128.07Thymidylate synthase OS=Vibrio cholerae GN=thyA PE... [more]
TYSY_VIBC38.123e-1128.07Thymidylate synthase OS=Vibrio cholerae serotype O... [more]
TYSY_VIBVU8.123e-1129.06Thymidylate synthase OS=Vibrio vulnificus GN=thyA ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16402 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-13_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908274 ID=DR908274; Name=DR908274; organism=Citrus sinensis; type=EST; length=675bp
TATGGGATGGCAATGCATCCAGGGAATATCTTGATAGTGTTGGTTTGACG
GACAGAGAGGAGGGTGACCTAGGACCTGTATATGGTTTTCAATGGAGGAA
CTTTGGTGCAAGGTATACTAACATGCATGCTGACTACTCTGGCCAAGGCT
TTGATCAGTTGCTAGATGTTATTAACAAGATTAAGAATAATCCAAATGAT
CGGCGGATTGTACTCTCGGCTTGGAATCCTTCTGATCTCAAATTGATGGC
GCTTCCACCTTGCCACATGTTTGCTCAGTTCTATATGGCTAATGGGGAGT
TATCATGTCAAATGTATCAGCGCTCTGCTGATATGGGCCCTGGGTGTGCC
GTTTAACATTGCTTCATATGCCCTCTTGACATGCATGATTGCTCATGTTT
GTGATCTTGCTCCTGGCGATTTCATTCATGTCATTGGTGATGCTCATGTT
TATCGCAATCATGTCAGGCCCCTGGAGGAACAACTTCAGAAACTGCCAAA
GCCTTTTCCAATTTTGAAGATCAATCCTGAGAAGAAGATATAGATTCTTT
TGTAGCAGAGGATTTCAAACTTATAGGTTATGATCCACACCAGAAAATAG
AAATGAAAATGGCGGTATAGATCTCTCTTATAGGGTCAGTAACTCACAGA
CTCTGGTCCCTCCTAGGCAATAATT
back to top