DR908274

Overview
NameDR908274
Unique NameDR908274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_AGRVS (Thymidylate synthase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=thyA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.791e-43
Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = 3
Query:   57 EEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            E GDLGPVYG QWR++            G   DQ+ +++  IK NPN RR ++SAWNP+++  MALPPCH   QFY+A+G+LSCQ+YQRSAD+
Sbjct:   86 ENGDLGPVYGAQWRSWPKP--------GGGHIDQIANLVESIKTNPNSRRHIVSAWNPAEVDEMALPPCHCLFQFYVADGKLSCQLYQRSADI 170          

HSP 2 Score: 88.5817 bits (218), Expect = 5.791e-43
Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK 537
            LGVPFNIASYALLT M+A V  L  GDFIH +GDAH+Y NH      QL + PKP P+++INP+ K
Sbjct:  172 LGVPFNIASYALLTMMVAQVTGLKAGDFIHTLGDAHLYANHFEQARLQLTRQPKPLPVMRINPDVK 237          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_RHIL3 (Thymidylate synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=thyA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.281e-42
Identity = 50/93 (53.76%), Postives = 66/93 (70.97%), Query Frame = 3
Query:   57 EEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            E GDLGPVYG QWR++ A          G   DQ+ +++  I NNPN RR ++SAWNP+++  MALPPCH   QFY+A+G+LSCQ+YQRSAD+
Sbjct:   86 ENGDLGPVYGAQWRSWPAP--------DGGHIDQIANLVKGIVNNPNSRRHIVSAWNPAEVDEMALPPCHCLFQFYVADGKLSCQLYQRSADI 170          

HSP 2 Score: 86.6557 bits (213), Expect = 1.281e-42
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK 537
            LGVPFNI+SYALLT M+A V  L PGDF+H +GDAH+Y NH    + QL + PKP P ++I P+ K
Sbjct:  172 LGVPFNISSYALLTMMVAQVVGLKPGDFVHTLGDAHLYHNHFDQAKLQLARRPKPLPFMRIKPDVK 237          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_OCHA4 (Thymidylate synthase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=thyA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.835e-42
Identity = 52/114 (45.61%), Postives = 76/114 (66.67%), Query Frame = 3
Query:    9 GNASREYLDSVGLTDREE-----GDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            G+ +  YL   G++  +E     GDLGPVYG+QWR++ A          G+  DQ+ +++  +  NPN RR+++SAWNP+ +  MALPPCH   QFY+A+G+LSCQ+YQRSAD+
Sbjct:   65 GDTNIAYLKENGVSIWDEWADKNGDLGPVYGYQWRSWPAP--------DGRHIDQIANLLKMLHGNPNSRRLIVSAWNPALVDEMALPPCHCLFQFYVADGKLSCQLYQRSADI 170          

HSP 2 Score: 85.8853 bits (211), Expect = 2.835e-42
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK 537
            LGVPFNIASYALLT MIA V  L PG+FIH +GDAH+Y NH      QL ++PK  P + INP+ K
Sbjct:  172 LGVPFNIASYALLTMMIAQVAGLKPGEFIHTLGDAHIYANHFDQARLQLTRIPKKLPTMWINPDVK 237          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_PARL1 (Thymidylate synthase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=thyA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.695e-42
Identity = 51/114 (44.74%), Postives = 74/114 (64.91%), Query Frame = 3
Query:    9 GNASREYLDSVGLT-----DREEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            G+ +  YL + G++       E G+LGPVYG QWR++            G   DQ+ +++ +IK NP+ RR+++SAWN +D+  MALPPCH   QFY+A G+LSCQ+YQRSAD+
Sbjct:   65 GDTNTRYLKANGVSIWDDWADENGELGPVYGHQWRSWPTP--------DGGKIDQIRNLVEQIKTNPDSRRLIVSAWNVADVDSMALPPCHCLFQFYVAEGKLSCQLYQRSADI 170          

HSP 2 Score: 87.4261 bits (215), Expect = 3.695e-42
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK 537
            LGVPFNIASYALLT M+A V  L PG+FIH  GDAH+Y NH+   ++QL + PK  P++ INP+ K
Sbjct:  172 LGVPFNIASYALLTMMVAQVTGLKPGEFIHTFGDAHLYLNHLEQADKQLAREPKKLPVMHINPDVK 237          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_SCHPO (Probable thymidylate synthase OS=Schizosaccharomyces pombe GN=SPAC15E1.04 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.842e-42
Identity = 97/218 (44.50%), Postives = 125/218 (57.34%), Query Frame = 3
Query:    3 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMA-------NGELSCQMYQRSADMGPGC---AV*HCFICPLDMHDCSCL*SCSWRFHSCHW*CSCLSQSCQAPGGTTSETAKAFSNF---EDQS*EEDIDSFVAEDFKLIGYDPHQKIEMKMAV 617
            WDGN SRE+LDS GLTDR+ GDLGP+YGFQWR+FGA+Y +   DY+ +G DQL  VI+ +K NP DRRI+LSAWNP  +  MALPPCH+F QFY++         +LS  MYQRSADMG G       +  +  +  H C      +  F      C   +   +A         KAF       D      IDSF  +DF + GY+P+  I+MKM+V
Sbjct:  411 WDGNGSREFLDSRGLTDRKVGDLGPIYGFQWRHFGAQYVDCDTDYTNKGVDQLAQVISTLKLNPYDRRIILSAWNPLAIPEMALPPCHIFCQFYVSEPCKPGGKPQLSSMMYQRSADMGLGVPFNIASYSLLTHMIAHMCGYE---AAEFVHVMGDCHIYNDHLEALQTQLERVPKAFPKLFFKRDAKDIGSIDSFSVDDFAVEGYNPYGPIKMKMSV 625          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_LACS1 (Thymidylate synthase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=thyA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.802e-42
Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = 3
Query:   63 GDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            G+LG VYG QWR++  R        +G+  DQ+ DVI  IKNNP+ RR++++AWNP D+ L ALPPCH   QFY+ +G+LSCQ+YQRSAD+
Sbjct:  142 GNLGDVYGAQWRHWQTR--------NGETIDQIKDVIETIKNNPDSRRMIVTAWNPEDVPLSALPPCHTLFQFYVNDGKLSCQLYQRSADV 224          

HSP 2 Score: 84.7297 bits (208), Expect = 4.802e-42
Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK 537
            LGVPFNIASYALLT MIA    L  G+F+H +GDAH+Y NH+  + EQLQ+ P   P L +NPEKK
Sbjct:  226 LGVPFNIASYALLTHMIARETGLEVGEFVHTLGDAHIYLNHLDQVNEQLQRKPNDAPTLWLNPEKK 291          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_PSYCK (Thymidylate synthase OS=Psychrobacter cryohalolentis (strain K5) GN=thyA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.386e-41
Identity = 50/95 (52.63%), Postives = 68/95 (71.58%), Query Frame = 3
Query:   51 DREEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            +R  GDLGP+YG QWRN+GA  T     Y+  G DQ+  V+ +IK NPN RR+++S WNP +   +ALPPCH   QF++A+ +LSCQ+YQRSAD+
Sbjct:  103 NRPAGDLGPIYGHQWRNYGAT-TTADGQYNSDGVDQIAQVVEQIKTNPNSRRLIVSGWNPGEADQVALPPCHTLFQFFVADNKLSCQLYQRSADL 196          

HSP 2 Score: 72.4034 bits (176), Expect = 1.386e-41
Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK 537
            LGVPFNIASYA+LT M+A VC+L  G+FI   GD H+Y+NH   +E QL +     P L +NP  K
Sbjct:  198 LGVPFNIASYAMLTHMVAQVCNLEVGEFIWTGGDCHIYQNHREQVELQLTRSLYTLPTLALNPNVK 263          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_AGRT5 (Thymidylate synthase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=thyA PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.388e-41
Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = 3
Query:   57 EEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            E GDLGPVYG QWR++ A          G+  DQ+  +I  +K NPN RR ++SAWNP+ +  MALPPCH   QFY+++G+LSCQ+YQRSAD+
Sbjct:   86 ENGDLGPVYGAQWRSWPAP--------DGRHIDQIALLIEALKTNPNSRRHIVSAWNPALVDEMALPPCHCLFQFYVSDGKLSCQLYQRSADI 170          

HSP 2 Score: 87.0409 bits (214), Expect = 1.388e-41
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK 537
            LGVPFNIASYALLT M+A V  L PGDF+H +GDAH+Y NH    + Q+ + PK  P +++NP+ K
Sbjct:  172 LGVPFNIASYALLTLMVAQVVGLKPGDFVHTLGDAHIYANHFEQAQLQMTRTPKALPTMRLNPDVK 237          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_CRYNE (Thymidylate synthase OS=Cryptococcus neoformans GN=TMP1 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.907e-41
Identity = 99/217 (45.62%), Postives = 125/217 (57.60%), Query Frame = 3
Query:    3 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYM---------ANGELSCQMYQRSADMGPGCAV*HCFICPLDMHDCSCL*SCSWRFHSCHW*CSCLSQSCQAPGGTTSE-TAKAFSNFEDQS*EEDI---DSFVAEDFKLIGYDPHQKIEMKMA 614
            WDGN S+E+L+ VGL  R EGDLGPVYGFQWR+FGA YT+   DY G+G DQL  VI+ IKNNP DRRI+LSAWNP DL LMALPPCHMF QF++         +  +LSC MYQRS D+G G    +     L  H  + +              + + +    P  T  E   + F   +    +E+I   D F  EDF + GY P  KI+MKM+
Sbjct:  101 WDGNGSKEFLEKVGLGHRREGDLGPVYGFQWRHFGAEYTDADGDYKGKGVDQLQRVIDTIKNNPTDRRIILSAWNPKDLPLMALPPCHMFCQFFVSLPPADSPGSKPKLSCLMYQRSCDLGLGVPF-NIASYALLTHMIALITDTEPHEFILQMGDAHVYRDHVEPLKTQLEREPRDFPKLKWARSKEEIGDIDGFKVEDFVVEGYKPWGKIDMKMS 316          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_RUTMC (Thymidylate synthase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=thyA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.356e-41
Identity = 51/93 (54.84%), Postives = 68/93 (73.12%), Query Frame = 3
Query:   57 EEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            + GDLGP+YG QWRN+         +  G+  DQ++ VI +IKN P+ RRI++SAWN  +L+ MALPPCH F QFY+A G+LSCQ+YQRSAD+
Sbjct:   86 KNGDLGPIYGVQWRNW--------QNVRGESIDQIMQVIEQIKNTPDSRRIIVSAWNVGELENMALPPCHAFFQFYVALGKLSCQLYQRSADV 170          

HSP 2 Score: 77.0258 bits (188), Expect = 2.356e-41
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKIN 525
            LGVPFNIASYALLT M+A  CDL  GDFI   GD H+Y NH + +E QL + PK    LKIN
Sbjct:  172 LGVPFNIASYALLTHMMAQQCDLEVGDFIWSGGDCHIYSNHTKQVEIQLARTPKTLATLKIN 233          
The following BLAST results are available for this feature:
BLAST of DR908274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 394
Match NameE-valueIdentityDescription
TYSY_AGRVS5.791e-4352.69Thymidylate synthase OS=Agrobacterium vitis (strai... [more]
TYSY_RHIL31.281e-4253.76Thymidylate synthase OS=Rhizobium leguminosarum bv... [more]
TYSY_OCHA42.835e-4245.61Thymidylate synthase OS=Ochrobactrum anthropi (str... [more]
TYSY_PARL13.695e-4244.74Thymidylate synthase OS=Parvibaculum lavamentivora... [more]
TYSY_SCHPO3.842e-4244.50Probable thymidylate synthase OS=Schizosaccharomyc... [more]
TYSY_LACS14.802e-4253.85Thymidylate synthase OS=Lactobacillus salivarius s... [more]
TYSY_PSYCK1.386e-4152.63Thymidylate synthase OS=Psychrobacter cryohalolent... [more]
TYSY_AGRT51.388e-4152.69Thymidylate synthase OS=Agrobacterium tumefaciens ... [more]
TYSY_CRYNE1.907e-4145.62Thymidylate synthase OS=Cryptococcus neoformans GN... [more]
TYSY_RUTMC2.356e-4154.84Thymidylate synthase OS=Ruthia magnifica subsp. Ca... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16402 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-13_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908274 ID=DR908274; Name=DR908274; organism=Citrus sinensis; type=EST; length=675bp
TATGGGATGGCAATGCATCCAGGGAATATCTTGATAGTGTTGGTTTGACG
GACAGAGAGGAGGGTGACCTAGGACCTGTATATGGTTTTCAATGGAGGAA
CTTTGGTGCAAGGTATACTAACATGCATGCTGACTACTCTGGCCAAGGCT
TTGATCAGTTGCTAGATGTTATTAACAAGATTAAGAATAATCCAAATGAT
CGGCGGATTGTACTCTCGGCTTGGAATCCTTCTGATCTCAAATTGATGGC
GCTTCCACCTTGCCACATGTTTGCTCAGTTCTATATGGCTAATGGGGAGT
TATCATGTCAAATGTATCAGCGCTCTGCTGATATGGGCCCTGGGTGTGCC
GTTTAACATTGCTTCATATGCCCTCTTGACATGCATGATTGCTCATGTTT
GTGATCTTGCTCCTGGCGATTTCATTCATGTCATTGGTGATGCTCATGTT
TATCGCAATCATGTCAGGCCCCTGGAGGAACAACTTCAGAAACTGCCAAA
GCCTTTTCCAATTTTGAAGATCAATCCTGAGAAGAAGATATAGATTCTTT
TGTAGCAGAGGATTTCAAACTTATAGGTTATGATCCACACCAGAAAATAG
AAATGAAAATGGCGGTATAGATCTCTCTTATAGGGTCAGTAACTCACAGA
CTCTGGTCCCTCCTAGGCAATAATT
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