DR908274
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_AGRVS (Thymidylate synthase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=thyA PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 5.791e-43 Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = 3 Query: 57 EEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335 E GDLGPVYG QWR++ G DQ+ +++ IK NPN RR ++SAWNP+++ MALPPCH QFY+A+G+LSCQ+YQRSAD+ Sbjct: 86 ENGDLGPVYGAQWRSWPKP--------GGGHIDQIANLVESIKTNPNSRRHIVSAWNPAEVDEMALPPCHCLFQFYVADGKLSCQLYQRSADI 170 HSP 2 Score: 88.5817 bits (218), Expect = 5.791e-43 Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 1 Query: 340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK 537 LGVPFNIASYALLT M+A V L GDFIH +GDAH+Y NH QL + PKP P+++INP+ K Sbjct: 172 LGVPFNIASYALLTMMVAQVTGLKAGDFIHTLGDAHLYANHFEQARLQLTRQPKPLPVMRINPDVK 237
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_RHIL3 (Thymidylate synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=thyA PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.281e-42 Identity = 50/93 (53.76%), Postives = 66/93 (70.97%), Query Frame = 3 Query: 57 EEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335 E GDLGPVYG QWR++ A G DQ+ +++ I NNPN RR ++SAWNP+++ MALPPCH QFY+A+G+LSCQ+YQRSAD+ Sbjct: 86 ENGDLGPVYGAQWRSWPAP--------DGGHIDQIANLVKGIVNNPNSRRHIVSAWNPAEVDEMALPPCHCLFQFYVADGKLSCQLYQRSADI 170 HSP 2 Score: 86.6557 bits (213), Expect = 1.281e-42 Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 1 Query: 340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK 537 LGVPFNI+SYALLT M+A V L PGDF+H +GDAH+Y NH + QL + PKP P ++I P+ K Sbjct: 172 LGVPFNISSYALLTMMVAQVVGLKPGDFVHTLGDAHLYHNHFDQAKLQLARRPKPLPFMRIKPDVK 237
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_OCHA4 (Thymidylate synthase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=thyA PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.835e-42 Identity = 52/114 (45.61%), Postives = 76/114 (66.67%), Query Frame = 3 Query: 9 GNASREYLDSVGLTDREE-----GDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335 G+ + YL G++ +E GDLGPVYG+QWR++ A G+ DQ+ +++ + NPN RR+++SAWNP+ + MALPPCH QFY+A+G+LSCQ+YQRSAD+ Sbjct: 65 GDTNIAYLKENGVSIWDEWADKNGDLGPVYGYQWRSWPAP--------DGRHIDQIANLLKMLHGNPNSRRLIVSAWNPALVDEMALPPCHCLFQFYVADGKLSCQLYQRSADI 170 HSP 2 Score: 85.8853 bits (211), Expect = 2.835e-42 Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 1 Query: 340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK 537 LGVPFNIASYALLT MIA V L PG+FIH +GDAH+Y NH QL ++PK P + INP+ K Sbjct: 172 LGVPFNIASYALLTMMIAQVAGLKPGEFIHTLGDAHIYANHFDQARLQLTRIPKKLPTMWINPDVK 237
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_PARL1 (Thymidylate synthase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=thyA PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.695e-42 Identity = 51/114 (44.74%), Postives = 74/114 (64.91%), Query Frame = 3 Query: 9 GNASREYLDSVGLT-----DREEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335 G+ + YL + G++ E G+LGPVYG QWR++ G DQ+ +++ +IK NP+ RR+++SAWN +D+ MALPPCH QFY+A G+LSCQ+YQRSAD+ Sbjct: 65 GDTNTRYLKANGVSIWDDWADENGELGPVYGHQWRSWPTP--------DGGKIDQIRNLVEQIKTNPDSRRLIVSAWNVADVDSMALPPCHCLFQFYVAEGKLSCQLYQRSADI 170 HSP 2 Score: 87.4261 bits (215), Expect = 3.695e-42 Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1 Query: 340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK 537 LGVPFNIASYALLT M+A V L PG+FIH GDAH+Y NH+ ++QL + PK P++ INP+ K Sbjct: 172 LGVPFNIASYALLTMMVAQVTGLKPGEFIHTFGDAHLYLNHLEQADKQLAREPKKLPVMHINPDVK 237
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_SCHPO (Probable thymidylate synthase OS=Schizosaccharomyces pombe GN=SPAC15E1.04 PE=2 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 3.842e-42 Identity = 97/218 (44.50%), Postives = 125/218 (57.34%), Query Frame = 3 Query: 3 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMA-------NGELSCQMYQRSADMGPGC---AV*HCFICPLDMHDCSCL*SCSWRFHSCHW*CSCLSQSCQAPGGTTSETAKAFSNF---EDQS*EEDIDSFVAEDFKLIGYDPHQKIEMKMAV 617 WDGN SRE+LDS GLTDR+ GDLGP+YGFQWR+FGA+Y + DY+ +G DQL VI+ +K NP DRRI+LSAWNP + MALPPCH+F QFY++ +LS MYQRSADMG G + + + H C + F C + +A KAF D IDSF +DF + GY+P+ I+MKM+V Sbjct: 411 WDGNGSREFLDSRGLTDRKVGDLGPIYGFQWRHFGAQYVDCDTDYTNKGVDQLAQVISTLKLNPYDRRIILSAWNPLAIPEMALPPCHIFCQFYVSEPCKPGGKPQLSSMMYQRSADMGLGVPFNIASYSLLTHMIAHMCGYE---AAEFVHVMGDCHIYNDHLEALQTQLERVPKAFPKLFFKRDAKDIGSIDSFSVDDFAVEGYNPYGPIKMKMSV 625
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_LACS1 (Thymidylate synthase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=thyA PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 4.802e-42 Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = 3 Query: 63 GDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335 G+LG VYG QWR++ R +G+ DQ+ DVI IKNNP+ RR++++AWNP D+ L ALPPCH QFY+ +G+LSCQ+YQRSAD+ Sbjct: 142 GNLGDVYGAQWRHWQTR--------NGETIDQIKDVIETIKNNPDSRRMIVTAWNPEDVPLSALPPCHTLFQFYVNDGKLSCQLYQRSADV 224 HSP 2 Score: 84.7297 bits (208), Expect = 4.802e-42 Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 1 Query: 340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK 537 LGVPFNIASYALLT MIA L G+F+H +GDAH+Y NH+ + EQLQ+ P P L +NPEKK Sbjct: 226 LGVPFNIASYALLTHMIARETGLEVGEFVHTLGDAHIYLNHLDQVNEQLQRKPNDAPTLWLNPEKK 291
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_PSYCK (Thymidylate synthase OS=Psychrobacter cryohalolentis (strain K5) GN=thyA PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 1.386e-41 Identity = 50/95 (52.63%), Postives = 68/95 (71.58%), Query Frame = 3 Query: 51 DREEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335 +R GDLGP+YG QWRN+GA T Y+ G DQ+ V+ +IK NPN RR+++S WNP + +ALPPCH QF++A+ +LSCQ+YQRSAD+ Sbjct: 103 NRPAGDLGPIYGHQWRNYGAT-TTADGQYNSDGVDQIAQVVEQIKTNPNSRRLIVSGWNPGEADQVALPPCHTLFQFFVADNKLSCQLYQRSADL 196 HSP 2 Score: 72.4034 bits (176), Expect = 1.386e-41 Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 1 Query: 340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK 537 LGVPFNIASYA+LT M+A VC+L G+FI GD H+Y+NH +E QL + P L +NP K Sbjct: 198 LGVPFNIASYAMLTHMVAQVCNLEVGEFIWTGGDCHIYQNHREQVELQLTRSLYTLPTLALNPNVK 263
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_AGRT5 (Thymidylate synthase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=thyA PE=3 SV=2) HSP 1 Score: 103.99 bits (258), Expect = 1.388e-41 Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = 3 Query: 57 EEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335 E GDLGPVYG QWR++ A G+ DQ+ +I +K NPN RR ++SAWNP+ + MALPPCH QFY+++G+LSCQ+YQRSAD+ Sbjct: 86 ENGDLGPVYGAQWRSWPAP--------DGRHIDQIALLIEALKTNPNSRRHIVSAWNPALVDEMALPPCHCLFQFYVSDGKLSCQLYQRSADI 170 HSP 2 Score: 87.0409 bits (214), Expect = 1.388e-41 Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1 Query: 340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK 537 LGVPFNIASYALLT M+A V L PGDF+H +GDAH+Y NH + Q+ + PK P +++NP+ K Sbjct: 172 LGVPFNIASYALLTLMVAQVVGLKPGDFVHTLGDAHIYANHFEQAQLQMTRTPKALPTMRLNPDVK 237
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_CRYNE (Thymidylate synthase OS=Cryptococcus neoformans GN=TMP1 PE=1 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.907e-41 Identity = 99/217 (45.62%), Postives = 125/217 (57.60%), Query Frame = 3 Query: 3 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYM---------ANGELSCQMYQRSADMGPGCAV*HCFICPLDMHDCSCL*SCSWRFHSCHW*CSCLSQSCQAPGGTTSE-TAKAFSNFEDQS*EEDI---DSFVAEDFKLIGYDPHQKIEMKMA 614 WDGN S+E+L+ VGL R EGDLGPVYGFQWR+FGA YT+ DY G+G DQL VI+ IKNNP DRRI+LSAWNP DL LMALPPCHMF QF++ + +LSC MYQRS D+G G + L H + + + + + P T E + F + +E+I D F EDF + GY P KI+MKM+ Sbjct: 101 WDGNGSKEFLEKVGLGHRREGDLGPVYGFQWRHFGAEYTDADGDYKGKGVDQLQRVIDTIKNNPTDRRIILSAWNPKDLPLMALPPCHMFCQFFVSLPPADSPGSKPKLSCLMYQRSCDLGLGVPF-NIASYALLTHMIALITDTEPHEFILQMGDAHVYRDHVEPLKTQLEREPRDFPKLKWARSKEEIGDIDGFKVEDFVVEGYKPWGKIDMKMS 316
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_RUTMC (Thymidylate synthase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=thyA PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 2.356e-41 Identity = 51/93 (54.84%), Postives = 68/93 (73.12%), Query Frame = 3 Query: 57 EEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335 + GDLGP+YG QWRN+ + G+ DQ++ VI +IKN P+ RRI++SAWN +L+ MALPPCH F QFY+A G+LSCQ+YQRSAD+ Sbjct: 86 KNGDLGPIYGVQWRNW--------QNVRGESIDQIMQVIEQIKNTPDSRRIIVSAWNVGELENMALPPCHAFFQFYVALGKLSCQLYQRSADV 170 HSP 2 Score: 77.0258 bits (188), Expect = 2.356e-41 Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 1 Query: 340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKIN 525 LGVPFNIASYALLT M+A CDL GDFI GD H+Y NH + +E QL + PK LKIN Sbjct: 172 LGVPFNIASYALLTHMMAQQCDLEVGDFIWSGGDCHIYSNHTKQVEIQLARTPKTLATLKIN 233 The following BLAST results are available for this feature:
BLAST of DR908274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 394
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Sequences
The
following sequences are available for this feature:
EST sequence >DR908274 ID=DR908274; Name=DR908274; organism=Citrus sinensis; type=EST; length=675bpback to top |