DR908274

Overview
NameDR908274
Unique NameDR908274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: DRTS_TRYCR (Bifunctional dihydrofolate reductase-thymidylate synthase OS=Trypanosoma cruzi PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.236e-40
Identity = 88/205 (42.93%), Postives = 115/205 (56.10%), Query Frame = 3
Query:    3 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGPGCAV*HCFICPLDMHDCSCL*SCSWRFHSCHW*CSCLSQSCQAPGGTTSETAKAFSNFEDQS*EEDIDSFVAEDFKLIGYDPHQKIEMKMAV 617
            WD N SR +LDS GLT+ EE DLGPVYGFQWR+FGA YT+  A+Y GQG DQ+  ++  +K NP+DRR++ +AWNPS L  MALPPCH+ AQFY++NGELSC +YQRS DMG G          L +                       S   +          +AF     +   E ++ +   D ++I Y P+  I MKMAV
Sbjct:  317 WDDNGSRAFLDSRGLTEYEEMDLGPVYGFQWRHFGAAYTHHDANYDGQGVDQIKAIVETLKTNPDDRRMLFTAWNPSALPRMALPPCHLLAQFYVSNGELSCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLRPGELVHTLGDAHVYSNHVEPCNEQLKRVPRAFPYLVFRREREFLEDYEEGDMEVIDYAPYPPISMKMAV 521          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_ALCBS (Thymidylate synthase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=thyA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.549e-40
Identity = 48/105 (45.71%), Postives = 64/105 (60.95%), Query Frame = 3
Query:   60 EGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLK-------------LMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            EG+LGPVYG QWR++            G   DQ+ +V+ +IK NP+ RR+V+SAWNP+ L                ALPPCH   QFY+A+G+LSCQ+YQRS D+
Sbjct:   87 EGELGPVYGEQWRSWKTA--------DGGVIDQITEVLKEIKRNPDSRRLVVSAWNPAVLPDPSISPDANAAAGKQALPPCHCLFQFYVADGKLSCQLYQRSGDI 183          

HSP 2 Score: 92.4337 bits (228), Expect = 2.549e-40
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK 537
            LGVPFNIASYALLT M+A VCDL PGDF+H +GDAH+Y NH+   + QL + P P P + +NP  K
Sbjct:  185 LGVPFNIASYALLTLMMAQVCDLQPGDFVHTLGDAHLYSNHLEQADTQLARTPGPLPTMTLNPAVK 250          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_MAGSA (Thymidylate synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=thyA PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 2.551e-40
Identity = 47/91 (51.65%), Postives = 65/91 (71.43%), Query Frame = 3
Query:   63 GDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            GDLGPVYG QWR++            G   DQ+  V+  I+ +P+ RR+++SAWNP+D++ MALPPCH   QFY+A+G+LSCQ+YQRSAD+
Sbjct:   88 GDLGPVYGKQWRSWACP--------DGSTVDQITQVVEMIRKSPDSRRLIVSAWNPADIESMALPPCHCLFQFYVADGKLSCQLYQRSADV 170          

HSP 2 Score: 80.1073 bits (196), Expect = 2.551e-40
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK 537
            LGVPFNIASYALLT M+A V  L  G F+H  GDAH+Y NH+     QL + P P P L++NPE K
Sbjct:  172 LGVPFNIASYALLTHMVAQVTGLEVGAFVHTFGDAHLYSNHMEQAALQLSRAPLPLPRLELNPEVK 237          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_BACP2 (Thymidylate synthase OS=Bacillus pumilus (strain SAFR-032) GN=thyA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.323e-40
Identity = 48/93 (51.61%), Postives = 67/93 (72.04%), Query Frame = 3
Query:   57 EEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            E G+LG VYG QWR++        A   G+  DQ+  +I+ I++NPN RR+++SAWNP ++  MALPPCH   QFY++NG+LSCQ+YQRSAD+
Sbjct:   86 ENGELGRVYGAQWRSW--------ASGDGETVDQITKLIHDIEHNPNSRRLIVSAWNPGEIDQMALPPCHCLFQFYVSNGKLSCQLYQRSADI 170          

HSP 2 Score: 79.337 bits (194), Expect = 3.323e-40
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK 537
            LGVPFNIASYALLT MIA V +L PG+F+H +GDAH+Y+NH+  +  QL++  +  P L+I  + K
Sbjct:  172 LGVPFNIASYALLTMMIAKVTNLEPGEFVHTLGDAHIYQNHLPQVNMQLEREERALPQLRITRDVK 237          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_XYLFT (Thymidylate synthase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=thyA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.330e-40
Identity = 49/91 (53.85%), Postives = 63/91 (69.23%), Query Frame = 3
Query:   63 GDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            G+LGPVYG QWR +        A   G   DQ+  ++ +IK NP+ RR+V+SAWN +DL  MAL PCH   QFY+ANG+LSCQ+YQRSAD+
Sbjct:   88 GELGPVYGKQWRRW--------AGADGHEIDQIRWLVEEIKRNPDSRRLVISAWNVADLPQMALVPCHALFQFYVANGKLSCQLYQRSADI 170          

HSP 2 Score: 83.1889 bits (204), Expect = 4.330e-40
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKIN 525
            LGVPFNIASYALLT M+A V  L  GDF+H +GDAH+Y NHV     QL ++P+P P+L++N
Sbjct:  172 LGVPFNIASYALLTHMLAQVTGLVVGDFVHTLGDAHLYANHVEQASVQLGRVPRPQPVLRLN 233          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_BARBK (Thymidylate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=thyA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.642e-40
Identity = 45/93 (48.39%), Postives = 68/93 (73.12%), Query Frame = 3
Query:   57 EEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            ++G+LGPVYG+QWR++ +          G+  DQ+ +++  I +NPN RR++++AWNP+ +  MALPPCH   QF +ANG+LSCQ+YQRSAD+
Sbjct:   86 KDGNLGPVYGYQWRSWPSS--------DGRYIDQISNLLAMINHNPNSRRLIVTAWNPALIDEMALPPCHCLFQFQVANGKLSCQLYQRSADI 170          

HSP 2 Score: 83.1889 bits (204), Expect = 5.642e-40
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPE 531
            LGVPFNIASYALLT MIA V  L  GDFIH +GDAH+Y NH    ++QL + P   P+++INP+
Sbjct:  172 LGVPFNIASYALLTMMIAQVTGLKVGDFIHTLGDAHLYSNHFEQAKQQLSRTPGILPLIRINPK 235          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_PEDPA (Thymidylate synthase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=thyA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.332e-40
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = 3
Query:   63 GDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            GDLG VYG QWR +           +G+  DQ+ +VI+ IKNNPN RR+++SAWNP D+   ALPPCH   QFY+A+G+LSCQ+YQRS D+
Sbjct:  140 GDLGNVYGSQWRAWKTS--------TGETIDQISNVIDMIKNNPNSRRMIVSAWNPEDVPTSALPPCHSLFQFYVADGKLSCQLYQRSGDI 222          

HSP 2 Score: 78.9518 bits (193), Expect = 7.332e-40
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILK 519
            LG+PFNIASYALLT +IA    L  G+FIH IGDAH+Y NH+  ++EQL++ P+P P LK
Sbjct:  224 LGIPFNIASYALLTELIAKATGLEVGEFIHTIGDAHIYSNHLDQVKEQLERTPRPAPKLK 283          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY2_BACAM (Thymidylate synthase 2 OS=Bacillus amyloliquefaciens GN=thyA2 PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 7.351e-40
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 3
Query:   57 EEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            E G+LGPVYG QWR++            G+  DQ+  +I+ IK NPN RR+++SAWN  ++  MALPPCH   QFY+A+G+LSCQ+YQRSAD+
Sbjct:   86 ENGELGPVYGSQWRSWRGA--------DGETIDQISRLIHDIKTNPNSRRLIVSAWNVGEIDRMALPPCHCLFQFYVADGKLSCQLYQRSADV 170          

HSP 2 Score: 79.7221 bits (195), Expect = 7.351e-40
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILK 519
            LGVPFNIASYALLT MIAHV  L PG+F+H  GD H+Y+NHV  +  QL +  +P P L+
Sbjct:  172 LGVPFNIASYALLTMMIAHVTGLEPGEFVHTFGDVHIYQNHVEQVNLQLTRDVRPLPKLR 231          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_LACRD (Thymidylate synthase OS=Lactobacillus reuteri (strain DSM 20016) GN=thyA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.550e-40
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 3
Query:   63 GDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            GDLG VYG QWR +            G   DQ+ +VI +IK  P+ RR+++SAWNP D+  MALPPCH   QFY+ +G+LSCQ+YQRSAD+
Sbjct:  144 GDLGLVYGSQWRKWKTS--------QGDTIDQIANVIQQIKTTPDSRRMIVSAWNPEDVPSMALPPCHTMFQFYVNDGKLSCQLYQRSADI 226          

HSP 2 Score: 83.9593 bits (206), Expect = 9.550e-40
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK 537
            LGVPFNIASYALLT MIAH C L PG+F+H +GDAH+Y NH+  ++EQL + P   P L +  E K
Sbjct:  228 LGVPFNIASYALLTHMIAHQCGLEPGEFVHTLGDAHIYLNHLDQVKEQLTRTPHEAPKLILPAEPK 293          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_STAS1 (Thymidylate synthase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=thyA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.551e-40
Identity = 51/94 (54.26%), Postives = 68/94 (72.34%), Query Frame = 3
Query:   54 REEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            ++ GDLG VYG QWR++  +Y        G  +DQL  VIN+IK NPN RR ++SAWNP+++  MALPPCH   QFY+ +G+LSCQ+YQRSAD+
Sbjct:  140 KKYGDLGNVYGKQWRDWEDKY--------GNHYDQLKTVINQIKTNPNSRRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADI 225          

HSP 2 Score: 74.3294 bits (181), Expect = 9.551e-40
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKI 540
            LGVPFNIASY+LLT +IA  C L  G+F+H  GDAH+Y NH+  +E QL +     P L IN +  I
Sbjct:  227 LGVPFNIASYSLLTHLIAKECGLEVGEFVHTFGDAHIYSNHIEAIETQLARESYNPPTLNINSDASI 293          
The following BLAST results are available for this feature:
BLAST of DR908274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 394
Match NameE-valueIdentityDescription
DRTS_TRYCR1.236e-4042.93Bifunctional dihydrofolate reductase-thymidylate s... [more]
TYSY_ALCBS2.549e-4045.71Thymidylate synthase OS=Alcanivorax borkumensis (s... [more]
TYSY_MAGSA2.551e-4051.65Thymidylate synthase OS=Magnetospirillum magneticu... [more]
TYSY_BACP23.323e-4051.61Thymidylate synthase OS=Bacillus pumilus (strain S... [more]
TYSY_XYLFT4.330e-4053.85Thymidylate synthase OS=Xylella fastidiosa (strain... [more]
TYSY_BARBK5.642e-4048.39Thymidylate synthase OS=Bartonella bacilliformis (... [more]
TYSY_PEDPA7.332e-4053.85Thymidylate synthase OS=Pediococcus pentosaceus (s... [more]
TYSY2_BACAM7.351e-4051.61Thymidylate synthase 2 OS=Bacillus amyloliquefacie... [more]
TYSY_LACRD9.550e-4051.65Thymidylate synthase OS=Lactobacillus reuteri (str... [more]
TYSY_STAS19.551e-4054.26Thymidylate synthase OS=Staphylococcus saprophytic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16402 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-13_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908274 ID=DR908274; Name=DR908274; organism=Citrus sinensis; type=EST; length=675bp
TATGGGATGGCAATGCATCCAGGGAATATCTTGATAGTGTTGGTTTGACG
GACAGAGAGGAGGGTGACCTAGGACCTGTATATGGTTTTCAATGGAGGAA
CTTTGGTGCAAGGTATACTAACATGCATGCTGACTACTCTGGCCAAGGCT
TTGATCAGTTGCTAGATGTTATTAACAAGATTAAGAATAATCCAAATGAT
CGGCGGATTGTACTCTCGGCTTGGAATCCTTCTGATCTCAAATTGATGGC
GCTTCCACCTTGCCACATGTTTGCTCAGTTCTATATGGCTAATGGGGAGT
TATCATGTCAAATGTATCAGCGCTCTGCTGATATGGGCCCTGGGTGTGCC
GTTTAACATTGCTTCATATGCCCTCTTGACATGCATGATTGCTCATGTTT
GTGATCTTGCTCCTGGCGATTTCATTCATGTCATTGGTGATGCTCATGTT
TATCGCAATCATGTCAGGCCCCTGGAGGAACAACTTCAGAAACTGCCAAA
GCCTTTTCCAATTTTGAAGATCAATCCTGAGAAGAAGATATAGATTCTTT
TGTAGCAGAGGATTTCAAACTTATAGGTTATGATCCACACCAGAAAATAG
AAATGAAAATGGCGGTATAGATCTCTCTTATAGGGTCAGTAACTCACAGA
CTCTGGTCCCTCCTAGGCAATAATT
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