DR908274 | Citrus Genome Database

Overview


Name	DR908274
Unique Name	DR908274
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	675

Libraries


Library Name	Type
Citrus sinensis phloem	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_STAHJ (Thymidylate synthase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=thyA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.551e-40
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = 3

Query:   54 REEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            ++ GDLG VYG QWR++         D  G  FDQL  VI +IKN+PN RR ++SAWNP+++  MALPPCH   QFY+ +G LSCQ+YQRSAD+
Sbjct:  140 KKYGDLGNVYGKQWRDW--------VDKEGNHFDQLKTVIEQIKNSPNSRRHIVSAWNPTEIDSMALPPCHTMFQFYVQDGRLSCQLYQRSADI 225

HSP 2 Score: 76.2554 bits (186), Expect = 9.551e-40
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 1

Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKI 540
            LGVPFNIASYALLT +IA  C+L  G+F+H  GDAH+Y NH+  ++ QL +     P LKIN    I
Sbjct:  227 LGVPFNIASYALLTHLIAKECNLEVGEFVHTFGDAHIYSNHIEAIKTQLSRNSFDPPTLKINSNASI 293

BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_STAAW (Thymidylate synthase OS=Staphylococcus aureus (strain MW2) GN=thyA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.551e-40
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 3

Query:   54 REEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            ++ GDLG VYG QWR++         D  G  FDQL  VI +IK+NP+ RR ++SAWNP+++  MALPPCH   QFY+ +G+LSCQ+YQRSAD+
Sbjct:  140 KQFGDLGNVYGKQWRDW--------VDKDGNHFDQLKTVIEQIKHNPDSRRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADI 225

HSP 2 Score: 77.411 bits (189), Expect = 9.551e-40
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 1

Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKI 540
            LGVPFNIASYALLT +IA  C L  G+F+H  GDAH+Y NH+  ++ QL +     P LKIN +K I
Sbjct:  227 LGVPFNIASYALLTHLIAKECGLEVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPPTLKINSDKSI 293

BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_STAAT (Thymidylate synthase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=thyA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.551e-40
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 3

Query:   54 REEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            ++ GDLG VYG QWR++         D  G  FDQL  VI +IK+NP+ RR ++SAWNP+++  MALPPCH   QFY+ +G+LSCQ+YQRSAD+
Sbjct:  140 KQFGDLGNVYGKQWRDW--------VDKDGNHFDQLKTVIEQIKHNPDSRRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADI 225

HSP 2 Score: 77.411 bits (189), Expect = 9.551e-40
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 1

Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKI 540
            LGVPFNIASYALLT +IA  C L  G+F+H  GDAH+Y NH+  ++ QL +     P LKIN +K I
Sbjct:  227 LGVPFNIASYALLTHLIAKECGLEVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPPTLKINSDKSI 293

BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_STAAS (Thymidylate synthase OS=Staphylococcus aureus (strain MSSA476) GN=thyA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.551e-40
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 3

Query:   54 REEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            ++ GDLG VYG QWR++         D  G  FDQL  VI +IK+NP+ RR ++SAWNP+++  MALPPCH   QFY+ +G+LSCQ+YQRSAD+
Sbjct:  140 KQFGDLGNVYGKQWRDW--------VDKDGNHFDQLKTVIEQIKHNPDSRRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADI 225

HSP 2 Score: 77.411 bits (189), Expect = 9.551e-40
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 1

Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKI 540
            LGVPFNIASYALLT +IA  C L  G+F+H  GDAH+Y NH+  ++ QL +     P LKIN +K I
Sbjct:  227 LGVPFNIASYALLTHLIAKECGLEVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPPTLKINSDKSI 293

BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_STAAR (Thymidylate synthase OS=Staphylococcus aureus (strain MRSA252) GN=thyA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.551e-40
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 3

Query:   54 REEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            ++ GDLG VYG QWR++         D  G  FDQL  VI +IK+NP+ RR ++SAWNP+++  MALPPCH   QFY+ +G+LSCQ+YQRSAD+
Sbjct:  140 KQFGDLGNVYGKQWRDW--------VDKDGNHFDQLKTVIEQIKHNPDSRRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADI 225

HSP 2 Score: 77.411 bits (189), Expect = 9.551e-40
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 1

Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKI 540
            LGVPFNIASYALLT +IA  C L  G+F+H  GDAH+Y NH+  ++ QL +     P LKIN +K I
Sbjct:  227 LGVPFNIASYALLTHLIAKECGLEVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPPTLKINSDKSI 293

BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_STAAN (Thymidylate synthase OS=Staphylococcus aureus (strain N315) GN=thyA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.551e-40
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 3

Query:   54 REEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            ++ GDLG VYG QWR++         D  G  FDQL  VI +IK+NP+ RR ++SAWNP+++  MALPPCH   QFY+ +G+LSCQ+YQRSAD+
Sbjct:  140 KQFGDLGNVYGKQWRDW--------VDKDGNHFDQLKTVIEQIKHNPDSRRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADI 225

HSP 2 Score: 77.411 bits (189), Expect = 9.551e-40
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 1

Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKI 540
            LGVPFNIASYALLT +IA  C L  G+F+H  GDAH+Y NH+  ++ QL +     P LKIN +K I
Sbjct:  227 LGVPFNIASYALLTHLIAKECGLEVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPPTLKINSDKSI 293

BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_STAAM (Thymidylate synthase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=thyA PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.551e-40
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 3

Query:   54 REEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            ++ GDLG VYG QWR++         D  G  FDQL  VI +IK+NP+ RR ++SAWNP+++  MALPPCH   QFY+ +G+LSCQ+YQRSAD+
Sbjct:  140 KQFGDLGNVYGKQWRDW--------VDKDGNHFDQLKTVIEQIKHNPDSRRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADI 225

HSP 2 Score: 77.411 bits (189), Expect = 9.551e-40
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 1

Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKI 540
            LGVPFNIASYALLT +IA  C L  G+F+H  GDAH+Y NH+  ++ QL +     P LKIN +K I
Sbjct:  227 LGVPFNIASYALLTHLIAKECGLEVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPPTLKINSDKSI 293

BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_STAAE (Thymidylate synthase OS=Staphylococcus aureus (strain Newman) GN=thyA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.551e-40
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 3

Query:   54 REEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            ++ GDLG VYG QWR++         D  G  FDQL  VI +IK+NP+ RR ++SAWNP+++  MALPPCH   QFY+ +G+LSCQ+YQRSAD+
Sbjct:  140 KQFGDLGNVYGKQWRDW--------VDKDGNHFDQLKTVIEQIKHNPDSRRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADI 225

HSP 2 Score: 77.411 bits (189), Expect = 9.551e-40
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 1

Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKI 540
            LGVPFNIASYALLT +IA  C L  G+F+H  GDAH+Y NH+  ++ QL +     P LKIN +K I
Sbjct:  227 LGVPFNIASYALLTHLIAKECGLEVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPPTLKINSDKSI 293

BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_STAAC (Thymidylate synthase OS=Staphylococcus aureus (strain COL) GN=thyA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.551e-40
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 3

Query:   54 REEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            ++ GDLG VYG QWR++         D  G  FDQL  VI +IK+NP+ RR ++SAWNP+++  MALPPCH   QFY+ +G+LSCQ+YQRSAD+
Sbjct:  140 KQFGDLGNVYGKQWRDW--------VDKDGNHFDQLKTVIEQIKHNPDSRRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADI 225

HSP 2 Score: 77.411 bits (189), Expect = 9.551e-40
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 1

Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKI 540
            LGVPFNIASYALLT +IA  C L  G+F+H  GDAH+Y NH+  ++ QL +     P LKIN +K I
Sbjct:  227 LGVPFNIASYALLTHLIAKECGLEVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPPTLKINSDKSI 293

BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_STAAB (Thymidylate synthase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=thyA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.551e-40
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 3

Query:   54 REEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            ++ GDLG VYG QWR++         D  G  FDQL  VI +IK+NP+ RR ++SAWNP+++  MALPPCH   QFY+ +G+LSCQ+YQRSAD+
Sbjct:  140 KQFGDLGNVYGKQWRDW--------VDKDGNHFDQLKTVIEQIKHNPDSRRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADI 225

HSP 2 Score: 77.411 bits (189), Expect = 9.551e-40
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 1

Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKI 540
            LGVPFNIASYALLT +IA  C L  G+F+H  GDAH+Y NH+  ++ QL +     P LKIN +K I
Sbjct:  227 LGVPFNIASYALLTHLIAKECGLEVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPPTLKINSDKSI 293

The following BLAST results are available for this feature:

BLAST of DR908274 vs. ExPASy Swiss-Prot

BLAST of DR908274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 394


Match Name	E-value	Identity	Description
TYSY_STAHJ	9.551e-40	54.26	Thymidylate synthase OS=Staphylococcus haemolyticu...	[more]
TYSY_STAAW	9.551e-40	53.19	Thymidylate synthase OS=Staphylococcus aureus (str...	[more]
TYSY_STAAT	9.551e-40	53.19	Thymidylate synthase OS=Staphylococcus aureus (str...	[more]
TYSY_STAAS	9.551e-40	53.19	Thymidylate synthase OS=Staphylococcus aureus (str...	[more]
TYSY_STAAR	9.551e-40	53.19	Thymidylate synthase OS=Staphylococcus aureus (str...	[more]
TYSY_STAAN	9.551e-40	53.19	Thymidylate synthase OS=Staphylococcus aureus (str...	[more]
TYSY_STAAM	9.551e-40	53.19	Thymidylate synthase OS=Staphylococcus aureus (str...	[more]
TYSY_STAAE	9.551e-40	53.19	Thymidylate synthase OS=Staphylococcus aureus (str...	[more]
TYSY_STAAC	9.551e-40	53.19	Thymidylate synthase OS=Staphylococcus aureus (str...	[more]
TYSY_STAAB	9.551e-40	53.19	Thymidylate synthase OS=Staphylococcus aureus (str...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_16402 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-13_A05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR908274 ID=DR908274; Name=DR908274; organism=Citrus sinensis; type=EST; length=675bp
TATGGGATGGCAATGCATCCAGGGAATATCTTGATAGTGTTGGTTTGACG
GACAGAGAGGAGGGTGACCTAGGACCTGTATATGGTTTTCAATGGAGGAA
CTTTGGTGCAAGGTATACTAACATGCATGCTGACTACTCTGGCCAAGGCT
TTGATCAGTTGCTAGATGTTATTAACAAGATTAAGAATAATCCAAATGAT
CGGCGGATTGTACTCTCGGCTTGGAATCCTTCTGATCTCAAATTGATGGC
GCTTCCACCTTGCCACATGTTTGCTCAGTTCTATATGGCTAATGGGGAGT
TATCATGTCAAATGTATCAGCGCTCTGCTGATATGGGCCCTGGGTGTGCC
GTTTAACATTGCTTCATATGCCCTCTTGACATGCATGATTGCTCATGTTT
GTGATCTTGCTCCTGGCGATTTCATTCATGTCATTGGTGATGCTCATGTT
TATCGCAATCATGTCAGGCCCCTGGAGGAACAACTTCAGAAACTGCCAAA
GCCTTTTCCAATTTTGAAGATCAATCCTGAGAAGAAGATATAGATTCTTT
TGTAGCAGAGGATTTCAAACTTATAGGTTATGATCCACACCAGAAAATAG
AAATGAAAATGGCGGTATAGATCTCTCTTATAGGGTCAGTAACTCACAGA
CTCTGGTCCCTCCTAGGCAATAATT