DR908274

Overview
NameDR908274
Unique NameDR908274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_DICNV (Thymidylate synthase OS=Dichelobacter nodosus (strain VCS1703A) GN=thyA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.119e-39
Identity = 53/114 (46.49%), Postives = 74/114 (64.91%), Query Frame = 3
Query:    9 GNASREYLDSVGLTDREE-----GDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            GN +  YL+  G++  +E     GDLGP+YG QWRN+  R             DQ+  V+  +K NP+ RR+++S+WN + L+ MALPPCH+  QFY+ANG LSCQ+YQRSAD+
Sbjct:   65 GNTNIAYLNQNGVSIWDEWADKNGDLGPIYGKQWRNWAGR-------------DQIHQVLTSLKTNPDSRRMLVSSWNVAQLEEMALPPCHVLFQFYVANGRLSCQLYQRSADV 165          

HSP 2 Score: 75.485 bits (184), Expect = 2.119e-39
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKI 540
            LGVPFNIASYALLT M+A   DL  GDF+   GD H+YRNH    +EQL++ P P P + I   K I
Sbjct:  167 LGVPFNIASYALLTMMMAQQADLELGDFVWTGGDVHLYRNHFAQAQEQLKRQPYPLPKMHIKRAKSI 233          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_PHYMT (Thymidylate synthase OS=Phytoplasma mali (strain AT) GN=thyA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.756e-39
Identity = 47/108 (43.52%), Postives = 71/108 (65.74%), Query Frame = 3
Query:   21 REYLDSVGLTDRE---EGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            +E++D + + ++     GDLGP+YG QWRNF             QG DQL D+I++IK NP+ RR++L+AW+P+ +K M LPPCH+  Q Y+   ++S Q+YQRS D+
Sbjct:  100 QEFIDKIIIDEKFAKIHGDLGPIYGHQWRNF-------------QGIDQLTDLISEIKKNPHSRRLILTAWDPTVIKDMLLPPCHVMIQCYVEKNKISMQLYQRSGDV 194          

HSP 2 Score: 81.6481 bits (200), Expect = 2.756e-39
Identity = 33/63 (52.38%), Postives = 48/63 (76.19%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINP 528
            LG+PFNIASY+LL  +IA    L P +FIH IGDAH+Y NH+  +++Q++++PK  PI+ +NP
Sbjct:  196 LGIPFNIASYSLLLIIIAQCTGLKPFEFIHTIGDAHIYNNHIEQIQKQIKRIPKKLPIMTLNP 258          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY2_BACSU (Thymidylate synthase 2 OS=Bacillus subtilis GN=thyA2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.760e-39
Identity = 47/93 (50.54%), Postives = 64/93 (68.82%), Query Frame = 3
Query:   57 EEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            E G+LGPVYG QWR++            G+  DQ+  +I  IK NPN RR+++SAWN  ++  MALPPCH   QFY+++G+LSCQ+YQRSAD+
Sbjct:   86 ENGELGPVYGSQWRSWRGA--------DGETIDQISRLIEDIKTNPNSRRLIVSAWNVGEIDKMALPPCHCLFQFYVSDGKLSCQLYQRSADV 170          

HSP 2 Score: 79.337 bits (194), Expect = 2.760e-39
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILK 519
            LGVPFNIASYALLT +IAHV  L PG+FIH  GD H+Y+NH+  +  QL++  +P P L+
Sbjct:  172 LGVPFNIASYALLTMIIAHVTGLEPGEFIHTFGDVHIYQNHIEQVNLQLERDVRPLPQLR 231          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_LACSS (Thymidylate synthase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=thyA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.586e-39
Identity = 47/94 (50.00%), Postives = 65/94 (69.15%), Query Frame = 3
Query:   54 REEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            ++ G+LG +YG QWR +  R        SG+  DQ+ +VI  IK NP+ RR+++SAWNP D+  MALPPCH   QFY+ +G+LSCQ+YQRS D+
Sbjct:  137 KQYGELGDIYGKQWRAWQTR--------SGETIDQIKNVIEMIKTNPDSRRLIVSAWNPEDVPSMALPPCHTMFQFYVNDGKLSCQLYQRSGDV 222          

HSP 2 Score: 78.9518 bits (193), Expect = 3.586e-39
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK 537
            LGVPFNIASYALLT +IAH   L  G+FIH +GDAH+Y NHV  ++ QL +     P L +NP+KK
Sbjct:  224 LGVPFNIASYALLTHLIAHETGLEVGEFIHTLGDAHIYSNHVTQVKTQLARSMHAAPKLWLNPDKK 289          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_SACD2 (Thymidylate synthase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=thyA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.593e-39
Identity = 53/127 (41.73%), Postives = 70/127 (55.12%), Query Frame = 3
Query:    9 GNASREYLDSVGLT-----DREEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLK-------------LMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            G  + +YL   G+        EEGDLGPVYG QWR++            G   DQ   ++ +IKN P+ RR ++SAWNP+ L               MALPPCH   QFY+A+ +LSCQ+YQRSAD+
Sbjct:   65 GETNTQYLTDNGVRIWNEWATEEGDLGPVYGAQWRSWPTP--------DGGSLDQFALLVEQIKNKPDSRRHIISAWNPALLPDEGVSPQDNVRNGKMALPPCHTLFQFYVADNKLSCQLYQRSADI 183          

HSP 2 Score: 88.1965 bits (217), Expect = 3.593e-39
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK 537
            LGVPFNIASYALLT M+A V  L  GDF+H  GDAH+Y NH+  +E QL + P P P +KINPE K
Sbjct:  185 LGVPFNIASYALLTMMVAQVTGLELGDFVHTFGDAHLYLNHLEQVETQLAREPLPLPTMKINPEVK 250          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_THISH (Thymidylate synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=thyA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.681e-39
Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = 3
Query:   57 EEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLK-------------LMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            E+G+LGPVYG QWR +            G+  DQ+  V+ +I+  P+ RR+++SAWN ++L               MAL PCH F QFY+A+G LSCQ+YQRSAD+
Sbjct:   86 EDGELGPVYGRQWRAWPTP--------DGRHIDQISQVVEQIRTRPDSRRLIVSAWNVAELPDEGISPKDNARAGRMALAPCHTFFQFYVADGRLSCQLYQRSADV 183          

HSP 2 Score: 91.2781 bits (225), Expect = 4.681e-39
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK 537
            LGVPFNIASYALLT M+A V DL PGDF+H  GD H+Y NHV   +EQL + P P P + +NPE K
Sbjct:  185 LGVPFNIASYALLTLMVAQVTDLEPGDFVHTFGDVHLYSNHVEQAKEQLSREPYPLPKMHLNPEVK 250          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_XANC5 (Thymidylate synthase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=thyA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 6.104e-39
Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = 3
Query:   57 EEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            + GDLGPVYG QWR    R+T       G   DQ+  ++++IK NP+ RR+V+SAWN  +L  MAL PCH   QFY+ NG+LSCQ+YQRS D+
Sbjct:   86 DNGDLGPVYGKQWR----RWTGP----DGVEIDQMQWLVDEIKRNPDSRRLVISAWNVGELPQMALMPCHSLFQFYVVNGKLSCQLYQRSGDI 170          

HSP 2 Score: 83.5741 bits (205), Expect = 6.104e-39
Identity = 37/64 (57.81%), Postives = 45/64 (70.31%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPE 531
            LGVPFNIASYALLT M+A    L  GDF+H +GDAH+Y NH     EQL + P+  P L++NPE
Sbjct:  172 LGVPFNIASYALLTHMVAQATGLGVGDFVHTLGDAHLYSNHFEQAREQLTRTPRALPTLRLNPE 235          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_LISW6 (Thymidylate synthase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=thyA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 7.931e-39
Identity = 50/91 (54.95%), Postives = 63/91 (69.23%), Query Frame = 3
Query:   63 GDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            G+LG +YG QWR +            G+  DQL DVI  IK NPN RR+++SAWNP D+  MALPPCH   QFY+A+G+LSCQ+YQRSAD+
Sbjct:  138 GELGNIYGKQWREWKTS--------QGETIDQLADVIEMIKTNPNSRRLIVSAWNPEDIPNMALPPCHSLFQFYVADGKLSCQLYQRSADI 220          

HSP 2 Score: 73.1738 bits (178), Expect = 7.931e-39
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKIN 525
            LGVPFNIASYALLT +IA    L  G+FIH +GDAH+Y NH+  ++EQL + P   P L ++
Sbjct:  222 LGVPFNIASYALLTHLIAREVGLDVGEFIHTMGDAHLYNNHIEQVKEQLSRTPHALPKLVLS 283          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_LISMH (Thymidylate synthase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=thyA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.346e-38
Identity = 49/91 (53.85%), Postives = 63/91 (69.23%), Query Frame = 3
Query:   63 GDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            G+LG +YG QWR +            G+  DQL D+I  IK NPN RR+++SAWNP D+  MALPPCH   QFY+A+G+LSCQ+YQRSAD+
Sbjct:  138 GELGNIYGKQWREWKTS--------QGETIDQLADLIEMIKTNPNSRRLIVSAWNPEDIPNMALPPCHSLFQFYVADGKLSCQLYQRSADI 220          

HSP 2 Score: 73.559 bits (179), Expect = 1.346e-38
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKIN 525
            LGVPFNIASYALLT +IA    L  G+FIH +GDAH+Y NH+  ++EQL + P   P L ++
Sbjct:  222 LGVPFNIASYALLTHLIAREVGLEVGEFIHTMGDAHLYNNHIEQVKEQLSRTPHKLPKLVLS 283          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_LISMF (Thymidylate synthase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=thyA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.346e-38
Identity = 49/91 (53.85%), Postives = 63/91 (69.23%), Query Frame = 3
Query:   63 GDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 335
            G+LG +YG QWR +            G+  DQL D+I  IK NPN RR+++SAWNP D+  MALPPCH   QFY+A+G+LSCQ+YQRSAD+
Sbjct:  138 GELGNIYGKQWREWKTS--------QGETIDQLADLIEMIKTNPNSRRLIVSAWNPEDIPNMALPPCHSLFQFYVADGKLSCQLYQRSADI 220          

HSP 2 Score: 73.559 bits (179), Expect = 1.346e-38
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKIN 525
            LGVPFNIASYALLT +IA    L  G+FIH +GDAH+Y NH+  ++EQL + P   P L ++
Sbjct:  222 LGVPFNIASYALLTHLIAREVGLEVGEFIHTMGDAHLYNNHIEQVKEQLSRTPHKLPKLVLS 283          
The following BLAST results are available for this feature:
BLAST of DR908274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 394
Match NameE-valueIdentityDescription
TYSY_DICNV2.119e-3946.49Thymidylate synthase OS=Dichelobacter nodosus (str... [more]
TYSY_PHYMT2.756e-3943.52Thymidylate synthase OS=Phytoplasma mali (strain A... [more]
TYSY2_BACSU2.760e-3950.54Thymidylate synthase 2 OS=Bacillus subtilis GN=thy... [more]
TYSY_LACSS3.586e-3950.00Thymidylate synthase OS=Lactobacillus sakei subsp.... [more]
TYSY_SACD23.593e-3941.73Thymidylate synthase OS=Saccharophagus degradans (... [more]
TYSY_THISH4.681e-3943.40Thymidylate synthase OS=Thioalkalivibrio sp. (stra... [more]
TYSY_XANC56.104e-3951.61Thymidylate synthase OS=Xanthomonas campestris pv.... [more]
TYSY_LISW67.931e-3954.95Thymidylate synthase OS=Listeria welshimeri serova... [more]
TYSY_LISMH1.346e-3853.85Thymidylate synthase OS=Listeria monocytogenes ser... [more]
TYSY_LISMF1.346e-3853.85Thymidylate synthase OS=Listeria monocytogenes ser... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16402 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-13_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908274 ID=DR908274; Name=DR908274; organism=Citrus sinensis; type=EST; length=675bp
TATGGGATGGCAATGCATCCAGGGAATATCTTGATAGTGTTGGTTTGACG
GACAGAGAGGAGGGTGACCTAGGACCTGTATATGGTTTTCAATGGAGGAA
CTTTGGTGCAAGGTATACTAACATGCATGCTGACTACTCTGGCCAAGGCT
TTGATCAGTTGCTAGATGTTATTAACAAGATTAAGAATAATCCAAATGAT
CGGCGGATTGTACTCTCGGCTTGGAATCCTTCTGATCTCAAATTGATGGC
GCTTCCACCTTGCCACATGTTTGCTCAGTTCTATATGGCTAATGGGGAGT
TATCATGTCAAATGTATCAGCGCTCTGCTGATATGGGCCCTGGGTGTGCC
GTTTAACATTGCTTCATATGCCCTCTTGACATGCATGATTGCTCATGTTT
GTGATCTTGCTCCTGGCGATTTCATTCATGTCATTGGTGATGCTCATGTT
TATCGCAATCATGTCAGGCCCCTGGAGGAACAACTTCAGAAACTGCCAAA
GCCTTTTCCAATTTTGAAGATCAATCCTGAGAAGAAGATATAGATTCTTT
TGTAGCAGAGGATTTCAAACTTATAGGTTATGATCCACACCAGAAAATAG
AAATGAAAATGGCGGTATAGATCTCTCTTATAGGGTCAGTAACTCACAGA
CTCTGGTCCCTCCTAGGCAATAATT
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