DR908181

Overview
NameDR908181
Unique NameDR908181
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908181 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.662e-17
Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = 1
Query:  157 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 384
            M I VKTLTGK I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76          
BLAST of DR908181 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  157 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 384
            M + VKTLTGK I++E++ SD + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          

HSP 2 Score: 46.2098 bits (108), Expect = 9.416e-11
Identity = 20/40 (50.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query:  385 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 504
            M + VKTLTGK I++E++ SD + ++K  +++KEGIPP Q
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQ 40          

HSP 3 Score: 41.2022 bits (95), Expect = 9.416e-11
Identity = 19/41 (46.34%), Postives = 27/41 (65.85%), Query Frame = 2
Query:  482 RRGFPQTSQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 604
            + G P + QRLIF GKQ++D  T+ D ++ +   LHLVL L
Sbjct:   33 KEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTL 73          
BLAST of DR908181 vs. ExPASy Swiss-Prot
Match: UBD_HUMAN (Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13
Identity = 46/133 (34.59%), Postives = 71/133 (53.38%), Query Frame = 1
Query:    4 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 384
            +K  ++ K  +P   Q L+   K L+  R+L+ Y I KE T+HL L++       + +F+       K   L+V  S ++  VKA I+ K GI P+ Q +   GK+LEDG+ +ADY I+K + L L     GG
Sbjct:   33 IKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165          
BLAST of DR908181 vs. ExPASy Swiss-Prot
Match: UCRP_MOUSE (Ubiquitin cross-reactive protein OS=Mus musculus GN=Isg15 PE=1 SV=4)

HSP 1 Score: 72.7886 bits (177), Expect = 2.027e-12
Identity = 44/128 (34.38%), Postives = 69/128 (53.91%), Query Frame = 1
Query:    4 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR-LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 384
            +K +I  K G+P  QQRL      L+DG TL+   +   ST+ LV++     + I V+   G +   EV  + T+D +K K+  +E +  DQ  L F G+ +ED   L +Y ++ + T+   LRLRGG
Sbjct:   28 LKKQIAQKIGVPAFQQRLAHQTAVLQDGLTLSSLGLGPSSTVMLVVQNCSEPLSILVRNERGHSNIYEVFLTQTVDTLKKKVSQREQVHEDQFWLSFEGRPMEDKELLGEYGLKPQCTVIKHLRLRGG 155          
BLAST of DR908181 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  157 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 384
            M++F++TLTG    L V   +T+ +VKAKI+  EGIP  +Q LI+   +LE+   L DYNI +  TL LVL +RGG
Sbjct:   28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYNISEGCTLKLVLAMRGG 103          
BLAST of DR908181 vs. ExPASy Swiss-Prot
Match: UCRP_HUMAN (Interferon-induced 17 kDa protein OS=Homo sapiens GN=ISG15 PE=1 SV=5)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 46/130 (35.38%), Postives = 71/130 (54.62%), Query Frame = 1
Query:    4 VKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 384
            +KA+I  K G+   QQRL    +G  L+D   LA   +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct:   28 LKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157          
The following BLAST results are available for this feature:
BLAST of DR908181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
UBL1_SCHPO4.662e-1752.63Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]
RUB1_YEAST1.148e-1552.63NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]
UBD_HUMAN5.335e-1334.59Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2[more]
UCRP_MOUSE2.027e-1234.38Ubiquitin cross-reactive protein OS=Mus musculus G... [more]
ANUB1_HUMAN4.993e-1147.37AN1-type zinc finger and ubiquitin domain-containi... [more]
UCRP_HUMAN6.521e-1135.38Interferon-induced 17 kDa protein OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16309 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-49_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908181 ID=DR908181; Name=DR908181; organism=Citrus sinensis; type=EST; length=703bp
AATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGATCAACA
GAGGTTAATCTTTGCCGGCAAACAACTTGAAGATGGTCGTACTCTTGCTG
ACTACAACATCCAGAAGGAGTCAACCCTCCATTTGGTGCTTCGTCTCCGT
GGTGGCATGCAGATCTTTGTGAAAACCCTCACCGGAAAAACAATTACTCT
TGAGGTTGAAAGTTCTGACACCATTGACAACGTGAAAGCAAAAATTCAAG
ACAAGGAGGGTATCCCACCAGATCAGCAGAGGCTCATTTTTGCTGGAAAG
CAGCTTGAAGATGGAAGGACTCTTGCAGACTATAACATCCAGAAAGAATC
CACTCTTCACTTGGTTCTTCGCCTCCGTGGTGGTATGCAGATTTTTGTGA
AGACACTCACTGGGAAAACCATCACGTTGGAGGTTGAGAGTTCGGACACA
ATTGACAATGTGAAGGCTAAGATCCAGGATAAGGAGGGGATTCCCCCAGA
CCAGCCAGAGGTTGATCTTTGCTGGAAAACAACTTGAGGATGGAAGGACT
CTTGCTGATTACAACATCCAGAAGGAGTCCACTCTGCATCTTGTGCTCCG
ACTCCCGTGGAGGTTTCTGAGTTTGGTCATCTGGGGGGTGGTGTGTGTCT
ATTTTGCTTCGGGTTGTCTTGGTAATGTTTGCTGGCTATTGGTGAATAGC
TTA
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