DR908122

Overview
NameDR908122
Unique NameDR908122
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA2_GEOMG (Glycogen synthase 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.605e-23
Identity = 69/166 (41.57%), Postives = 88/166 (53.01%), Query Frame = 3
Query:    6 IPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTV-------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWEE 479
            +P F  E +Q+++LGTG   +  QL +      +       F  PLA  I AG D  L+PSRFEPCGL QL A+ YGTVPIV  TGGL DTV        EG  GF    FS D          A    V+RALA Y   +   ++M+ GM +D+SW+  A K+EE
Sbjct:  319 LPRFAAEELQLVILGTGDLRLMHQLHEFRNKGVKNVSINLGFKEPLAPKIYAGCDMFLMPSRFEPCGLSQLIALSYGTVPIVRRTGGLADTVIDVTANPREG-NGFSFTEFSAD----------ACWDAVQRALAAYRDREGWRKIMRRGMLRDVSWRSAAGKYEE 473          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_ANOFW (Glycogen synthase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=glgA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.402e-23
Identity = 70/172 (40.70%), Postives = 100/172 (58.14%), Query Frame = 3
Query:   18 IKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTVE-------EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLEVAGS 509
            I E+VQ+I+LGTG+   E+  + + + YP++ R    F+  LAH I AGAD  L+PS+FEPCGL Q+ AM YG VPIV  TGGL DTV+       EG TGF   +F+             +  T++RA + Y  + + E +MK  M++D SW   A K+ + L +  +AGS
Sbjct:  319 IAEHVQMIILGTGEWEFEQFFQDMTMTYPDRVRVYIGFSEQLAHQIYAGADMFLMPSKFEPCGLGQMIAMRYGAVPIVRETGGLNDTVQSFNELTKEG-TGFTFKNFNAH----------DMLYTIQRARSFYEQKEIWETIMKQAMSRDYSWAKSAFKYNQ-LYDELMAGS 478          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_ANAD2 (Glycogen synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=glgA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.402e-23
Identity = 62/159 (38.99%), Postives = 94/159 (59.12%), Query Frame = 3
Query:    3 AIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 476
            A+P  +  +VQ+++LG+G    E+   +    +P++      F+  LAH I AGAD  L+PSRFEPCGL Q++++ YGTVP+V + GGL DTVE+ F GF  G+     E        A+ T  RRAL  +   +A   +++ GMA+D SW+  A ++E
Sbjct:  314 ALPALLARDVQVVLLGSGDAAYEQAFARAAREHPDRVAARIGFDEGLAHRIEAGADLFLMPSRFEPCGLNQMYSLRYGTVPVVRAVGGLADTVED-FDGFARGTGFRFSEYTP----QALLTATRRALDVFRDRRAWRGLVERGMAEDNSWERSAARYE 467          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA2_NITOC (Glycogen synthase 2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.402e-23
Identity = 64/167 (38.32%), Postives = 92/167 (55.09%), Query Frame = 3
Query:    3 AIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTV---------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKW 473
            A+P  + E +Q++ LG G++  +  L+QL   YP +      ++  LAH + AGAD  L+PSRFEPCGL QL+A+ YGTVPI   TGGL DT+         +E  TGF     S           +A+ T ++RALA Y  ++    +   GMAQ+ SW+  AK +
Sbjct:  316 ALPKLLAEKIQVVFLGEGEERHQNALQQLASRYPNQIGVSISYDERLAHGVQAGADIFLMPSRFEPCGLTQLYALRYGTVPIARRTGGLSDTIVDATEKNLRQELATGFTFTESS----------PSALLTAIQRALACYAQSRQWRRLALTGMAQNFSWQTSAKAY 472          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_BACSU (Glycogen synthase OS=Bacillus subtilis GN=glgA PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.443e-23
Identity = 64/171 (37.43%), Postives = 93/171 (54.39%), Query Frame = 3
Query:   21 KENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTV-----EEGF-TGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSE 512
            ++++Q++VLGTG++  E      E  + EK R    F+ PLAH I AG+D  L+PS+FEPCGL QL A+ YG +PIV  TGGL DTV     EEG   GF   +F+             +  T+ RAL+ Y  Q +   ++K  M  D SW   AK+++     +  +G +
Sbjct:  321 EQDIQLVVLGTGEREFEDYFRYAEFAFHEKCRAYIGFDEPLAHQIYAGSDMFLMPSKFEPCGLGQLIALQYGAIPIVRETGGLYDTVRAYQEEEGTGNGFTFSAFNAH----------DLKFTIERALSFYCQQDVWKSIVKTAMNADYSWGKSAKEYQRIFEQVTRSGRD 481          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_ACIBL (Glycogen synthase OS=Acidobacteria bacterium (strain Ellin345) GN=glgA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.898e-23
Identity = 62/154 (40.26%), Postives = 91/154 (59.09%), Query Frame = 3
Query:   21 KENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKW 473
            +E    +VLG+G K  E  + +L   YP +      ++  LAH I AG+D  L+PSR+EPCGL Q++++ YGTVPIV +TGGL DT+E  +  T    G   V+    D +D      TVR+AL  +  + A  ++M+NGMA+D SW   AK++
Sbjct:  321 REEAIFVVLGSGDKTYEDLMRRLSKQYPNRFAVRVAYDNALAHKIEAGSDMFLMPSRYEPCGLNQIYSLRYGTVPIVRATGGLDDTIENWDPITNRGTGFKFVEYSGEDMLD------TVRKALELFKDKTAWQKLMRNGMARDFSWNTAAKEY 468          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_RHORT (Glycogen synthase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glgA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.293e-22
Identity = 67/175 (38.29%), Postives = 92/175 (52.57%), Query Frame = 3
Query:    3 AIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGID 524
            A+P  I    Q+ +LG G   +E  L  +   YP  A     ++  LAH+I   ADF+L+PSRFEPCGL QL+A+ YGT+P+V  TGGL D+V     G        D    D     A+   + RA+  Y  +A L ++ + GM+QD SWK  AK++      L V GS  G D
Sbjct:  318 ALPGMIAGGAQVAILGAGDTGLEAALNDIVGRYPGAAAVHVGYDEHLAHLIEGAADFLLVPSRFEPCGLTQLYALRYGTIPVVRRTGGLADSVSHLDDGPNGTGIVFDHALPD-----ALEWAIGRAMTLYRDKATLNKVRQRGMSQDFSWKRSAKEY------LRVYGSMVGGD 481          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPS (Glycogen synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=glgA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.688e-22
Identity = 62/163 (38.04%), Postives = 85/163 (52.15%), Query Frame = 3
Query:    6 IPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTVEEG-----FTGFQMG-SFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 473
            +P  + +  Q+ +LG G  P+E       + YP +   V  ++  LAH I AGAD +L+PSRFEPCGL QL A+ YG VP+VA  GGL DTV +       TG   G  FS       PV    ++  + +  A Y   A    +  NGM  D+SWK PA+ +
Sbjct:  317 LPGMLADGAQLALLGAGDAPLEAGFRDAALKYPGQVGAVIGYDEALAHQIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFS-------PVTADMLTAALTKTRALYADHATWRNLQINGMTTDVSWKNPAQHY 472          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_RHOP2 (Glycogen synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=glgA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.688e-22
Identity = 62/163 (38.04%), Postives = 86/163 (52.76%), Query Frame = 3
Query:    6 IPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTVEEG-----FTGFQMG-SFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 473
            +P  + E  Q+ +LG G  P+E+      + YP +   V  ++  LAH I AGAD +L+PSRFEPCGL QL A+ YG VP+VA  GGL DTV +       TG   G  FS       PV    ++  + +  A +   A    +  NGM  D+SWK PA+ +
Sbjct:  317 LPGMLAEGAQLALLGAGDTPLEQGFRAAALKYPGQVGAVIGYDEALAHQIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFS-------PVTAQMLAKALTKTAALHADHAAWRNLQINGMTTDVSWKNPAQHY 472          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_ACICJ (Glycogen synthase OS=Acidiphilium cryptum (strain JF-5) GN=glgA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.688e-22
Identity = 64/167 (38.32%), Postives = 85/167 (50.90%), Query Frame = 3
Query:    3 AIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTVEEG---------FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKW 473
            A+P       Q+ VLGTG+  +E  L +     P +   +  F   L+H+I  GAD IL+PSRFEPCGL QL A  YG +P+V+  GGLVDTV +           TG Q G          PV  A +S  +RR  A Y      + M +N MA D+SW  PA+ +
Sbjct:  313 ALPVLDALGAQLAVLGTGETGIEASLREAVAARPGRVAAIIGFEESLSHLIQGGADAILVPSRFEPCGLTQLAAQRYGAIPVVSLVGGLVDTVIDANPVAISAGVATGIQFG----------PVSEAGLSDGLRRTAALYADPDKWSRMQRNAMALDVSWTEPARNY 469          
The following BLAST results are available for this feature:
BLAST of DR908122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA2_GEOMG2.605e-2341.57Glycogen synthase 2 OS=Geobacter metallireducens (... [more]
GLGA_ANOFW3.402e-2340.70Glycogen synthase OS=Anoxybacillus flavithermus (s... [more]
GLGA_ANAD23.402e-2338.99Glycogen synthase OS=Anaeromyxobacter dehalogenans... [more]
GLGA2_NITOC3.402e-2338.32Glycogen synthase 2 OS=Nitrosococcus oceani (strai... [more]
GLGA_BACSU4.443e-2337.43Glycogen synthase OS=Bacillus subtilis GN=glgA PE=... [more]
GLGA_ACIBL9.898e-2340.26Glycogen synthase OS=Acidobacteria bacterium (stra... [more]
GLGA_RHORT1.293e-2238.29Glycogen synthase OS=Rhodospirillum rubrum (strain... [more]
GLGA_RHOPS1.688e-2238.04Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_RHOP21.688e-2238.04Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_ACICJ1.688e-2238.32Glycogen synthase OS=Acidiphilium cryptum (strain ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16250 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-35_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908122 ID=DR908122; Name=DR908122; organism=Citrus sinensis; type=EST; length=718bp
CTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAATAGTCCTTGGT
ACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAGTTGGAGATACTGTA
CCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATATTCCTCTGGCGCATA
TGATAATAGCAGGAGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCT
TGTGGTCTCATTCAATTACATGCCATGCATTATGGAACCGTACCTATCGT
GGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGAT
TCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGAT
GTGGCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTAC
TCAAGCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCAT
GGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTT
GCTGGTAGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAA
GGAAAATGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTAT
TTTGGACCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTACT
TAGGAAATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCATAA
TGGTTTGGAGTTGAGACA
back to top