DR908122

Overview
NameDR908122
Unique NameDR908122
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_THICR (Glycogen synthase OS=Thiomicrospira crunogena (strain XCL-2) GN=glgA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.880e-22
Identity = 66/163 (40.49%), Postives = 91/163 (55.83%), Query Frame = 3
Query:    6 IPHFIKE-NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 473
            +P  I++ NV+ +++GTG    E QL +L   YPE+      ++  LAH + AGAD  L+PSRFEPCGL QL+++ YGT PIV STGGL DTV     E   TG   G    D          A+ +T+  AL  +  +    ++ KNGM QD SW   AK++
Sbjct:  327 LPELIEQTNVRFVIVGTGDSLFEYQLTELAHQYPERLMIYIGYSESLAHKVEAGADLFLMPSRFEPCGLNQLYSLAYGTPPIVHSTGGLSDTVVNATKENLATGQATGFVFYDPSR------HALKSTILHALHLFSKKGTWQKLQKNGMRQDFSWTRSAKQY 483          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_FERNB (Glycogen synthase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=glgA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.761e-22
Identity = 61/150 (40.67%), Postives = 89/150 (59.33%), Query Frame = 3
Query:   27 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT-QALAEMMKNGMAQDLSWKGPAKKW 473
            ++Q ++LGTG++  E   ++L   YPEK     KF+I LA  I AG D  L+PSR+EPCGL Q++++ YGT+PIV  TGGL DTV+E     + G+     E  DP   A +   + RA+  Y + +    ++KN M  DLSW   AK++
Sbjct:  327 DIQFVLLGTGEEKYENMFKKLGEKYPEKYSINLKFDIVLAQKIYAGCDMFLMPSRYEPCGLGQMYSLRYGTIPIVRYTGGLADTVKEYNPETKEGN-GFGFEGFDP---AHLLKAMARAIYFYNSKEDWNTLIKNAMTMDLSWDKSAKEY 472          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_DESAP (Glycogen synthase OS=Desulforudis audaxviator (strain MP104C) GN=glgA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.761e-22
Identity = 60/175 (34.29%), Postives = 94/175 (53.71%), Query Frame = 3
Query:    6 IPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKWEETLLN-LEVAGSEPGI 521
            I   ++ ++Q+++LG G K  E    ++++ +P K      FN+ LA  I AG+D  L+PSRFEPCGL QL ++ YGT+PIV  TGGL DTV E    + + +   +       D  A+ + + RAL  Y    +A   +++N M  D SW   A ++ +   + +E    E GI
Sbjct:  327 IDELMRLDIQMVILGKGDKYYEDMFREMKVQHPGKIAAHIGFNVVLAQRIYAGSDMFLMPSRFEPCGLGQLISLRYGTIPIVRETGGLADTVNE----YDLATGGGNGFVFKEYDARALYSAIARALKLYREDQEAWGRLVRNAMEMDFSWARSAVEYLQVYRDAMEKVSEERGI 497          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_BACC1 (Glycogen synthase OS=Bacillus cereus (strain ATCC 10987) GN=glgA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.761e-22
Identity = 66/162 (40.74%), Postives = 92/162 (56.79%), Query Frame = 3
Query:   18 IKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNL 494
            ++E+VQ I+LG+G    EK  E +   YPEK +    FN  LAH + AG+D  L+PS FEPCGL QL A+ YGT+PIV  TGGL DTV+  +  TG   G    +  A D +       TVRRA+  Y  + + E ++K  M +D SW   A  +++   +L
Sbjct:  319 MEEDVQCIILGSGDSEYEKFFEWMAYEYPEKVKVYIGFNEELAHQVYAGSDLFLMPSLFEPCGLGQLIALAYGTIPIVRETGGLNDTVQSYDEETGEGNGFSFTNFNAHDMLH------TVRRAIEFYHDKPVWEQLVKQAMTEDYSWGKSALAYKKLYKSL 474          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_ANASK (Glycogen synthase OS=Anaeromyxobacter sp. (strain K) GN=glgA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.761e-22
Identity = 59/164 (35.98%), Postives = 94/164 (57.32%), Query Frame = 3
Query:    3 AIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTVEE-----GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 476
            A+P  +  +VQ+++LG+G    ++   +    +P++      F+  LAH I AGAD  L+PSRFEPCGL Q++++ YGTVP+V + GGL DTVE+       TGF+   ++            A+ T  RRAL  +   +A   +++ GMA+D SW+  A ++E
Sbjct:  314 ALPALLARDVQVVLLGSGDPAYQETFARAAREHPDRVAARIGFDEGLAHRIEAGADLFLMPSRFEPCGLNQMYSLRYGTVPVVRAVGGLADTVEDFDGVARGTGFRFSEYTPQ----------ALLTATRRALDVFRDRRAWRGLVERGMAEDNSWERSAARYE 467          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_BACST (Glycogen synthase OS=Bacillus stearothermophilus GN=glgA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.912e-22
Identity = 64/162 (39.51%), Postives = 90/162 (55.56%), Query Frame = 3
Query:   18 IKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTVE-------EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMM-KNGMAQDLSWKGPAKKWEE 479
            + E++Q++VLGTG    E+   Q+   YP K      F+ PLAH I AGAD  LIPS FEPCGL Q+ A+ YGT+PIV  TGGL DTV+       EG  GF   +F+             +  T+RRAL+ Y   ++ E + +  M  D SW+  A ++++
Sbjct:  319 MSEDMQLVVLGTGDWRFEQFFSQMAAAYPGKVGVYIGFHEPLAHQIYAGADLFLIPSLFEPCGLSQMIALRYGTIPIVRETGGLNDTVQSYNEITKEG-NGFSFTNFNAH----------DMLYTIRRALSFYRQPSVWEQLTERAMRGDYSWRRSANQYKQ 469          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_BACCQ (Glycogen synthase OS=Bacillus cereus (strain Q1) GN=glgA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.912e-22
Identity = 65/162 (40.12%), Postives = 93/162 (57.41%), Query Frame = 3
Query:   18 IKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNL 494
            ++E+VQ I+LG+G    E+  E +   YPEK +    FN  LAH + AG+D  L+PS FEPCGL QL A+ YGT+PIV  TGGL DTV+  +  TG   G    +  A D +       TVRRA+  Y  + + E ++K  M +D SW+  A  +++   +L
Sbjct:  319 MEEDVQCIILGSGDSEYEQFFEWMAYEYPEKVKVYIGFNEELAHQVYAGSDLFLMPSLFEPCGLGQLIALAYGTIPIVRETGGLNDTVQSYDEETGEGNGFSFTNFNAHDMLH------TVRRAIEFYHDKPVWEQLVKQAMTEDYSWEKSALAYKKLYKSL 474          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_SYNS3 (Glycogen synthase OS=Synechococcus sp. (strain CC9311) GN=glgA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.416e-22
Identity = 69/188 (36.70%), Postives = 98/188 (52.13%), Query Frame = 3
Query:   27 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 569
            + QI+VLGTG + +E  L Q+   +P +      ++  L+ +I AG+D  L+PSRFEPCG+ QL AM YG VP+V   GGLVDTV      ++  TGF    F       DPVD    +  VR   A     +  E+ + GM QD SW   A ++++  +  EV G  EPG D   +   ++   A P
Sbjct:  302 DTQIVVLGTGDRGLESGLWQMASRHPGRVSVFLTYDDDLSRLIYAGSDAFLMPSRFEPCGISQLLAMRYGCVPVVRKVGGLVDTVPPHDPAQQSGTGFCFDRF-------DPVDF--FTALVRSWEAFRHQDSWRELQRRGMRQDYSWARSAMEYDQ--MYREVCGLKEPGPDAAAVEQFSQGQDADP 478          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPB (Glycogen synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=glgA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.416e-22
Identity = 58/168 (34.52%), Postives = 93/168 (55.36%), Query Frame = 3
Query:    3 AIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMK-NGMAQDLSWKGPAKKWEETLLNLEVA 503
            A+P  + E +Q+ +LG G   +E++ +     YP +   +  ++  LAH+I AGAD +L+PSRFEPCGL QL A+ YG VP+VA  GGL DTV +      + +         PV    ++  + +  A Y  +A  + ++ NGM  D+SW+ PA+ + +   +L  A
Sbjct:  316 ALPVLLAEGIQLALLGAGDPELEERFKSAAQAYPGQIGVMIGYDEDLAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLSDTVVDA-NEMAIAAGVATGVQFSPVTGDMLAAALSKTRALYADRAAWQALQHNGMTADVSWRNPAQHYAQLYRSLLAA 482          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_LACLA (Glycogen synthase OS=Lactococcus lactis subsp. lactis GN=glgA PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.416e-22
Identity = 68/163 (41.72%), Postives = 92/163 (56.44%), Query Frame = 3
Query:   18 IKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTV-------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG--TQALAEMMKNGMAQDLSWKGPAKKWEE 479
            ++ENVQI++LGTG   +E+        YP+K      F+I  A  I AG+DF L+PS FEPCGL Q+ AM YGT+PIV   GGL DTV       +EG TGF      VD E    V+      T+ RAL  YG   + L +M+ + M++D SW   A+++ E
Sbjct:  322 LEENVQIVLLGTGFPEIEEGFRYFSQKYPDKLSANIAFDIQFAQEIYAGSDFFLMPSAFEPCGLSQMIAMRYGTLPIVHEIGGLKDTVIPFNPISKEG-TGFGF----VDFEGQILVE------TINRALEVYGKEPEVLNKMVLSAMSKDFSWGTKAQQYIE 473          
The following BLAST results are available for this feature:
BLAST of DR908122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA_THICR2.880e-2240.49Glycogen synthase OS=Thiomicrospira crunogena (str... [more]
GLGA_FERNB3.761e-2240.67Glycogen synthase OS=Fervidobacterium nodosum (str... [more]
GLGA_DESAP3.761e-2234.29Glycogen synthase OS=Desulforudis audaxviator (str... [more]
GLGA_BACC13.761e-2240.74Glycogen synthase OS=Bacillus cereus (strain ATCC ... [more]
GLGA_ANASK3.761e-2235.98Glycogen synthase OS=Anaeromyxobacter sp. (strain ... [more]
GLGA_BACST4.912e-2239.51Glycogen synthase OS=Bacillus stearothermophilus G... [more]
GLGA_BACCQ4.912e-2240.12Glycogen synthase OS=Bacillus cereus (strain Q1) G... [more]
GLGA_SYNS36.416e-2236.70Glycogen synthase OS=Synechococcus sp. (strain CC9... [more]
GLGA_RHOPB6.416e-2234.52Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_LACLA6.416e-2241.72Glycogen synthase OS=Lactococcus lactis subsp. lac... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16250 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-35_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908122 ID=DR908122; Name=DR908122; organism=Citrus sinensis; type=EST; length=718bp
CTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAATAGTCCTTGGT
ACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAGTTGGAGATACTGTA
CCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATATTCCTCTGGCGCATA
TGATAATAGCAGGAGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCT
TGTGGTCTCATTCAATTACATGCCATGCATTATGGAACCGTACCTATCGT
GGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGAT
TCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGAT
GTGGCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTAC
TCAAGCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCAT
GGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTT
GCTGGTAGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAA
GGAAAATGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTAT
TTTGGACCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTACT
TAGGAAATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCATAA
TGGTTTGGAGTTGAGACA
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