DR908122

Overview
NameDR908122
Unique NameDR908122
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_CLONN (Glycogen synthase OS=Clostridium novyi (strain NT) GN=glgA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.064e-20
Identity = 62/166 (37.35%), Postives = 89/166 (53.61%), Query Frame = 3
Query:    6 IPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTV--EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA-TYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNL 494
            I   ++EN+Q++VLGTG +  E   +     YP+K      F+  LA  I A +D  L+PSRFEPCG+ QL A+ YG+VPIV  TGGL DTV     FTG   G       A D      +  T++RA+   Y     +++++ GM  D SW+  A+K+     N+
Sbjct:  316 IEELLQENIQLVVLGTGDQRYEDMFKFFAWKYPDKLSANIYFDGGLAQKIYAASDMFLMPSRFEPCGIGQLIALRYGSVPIVRETGGLNDTVFSYNEFTGEGNGFSFTSFNARD------MLYTIKRAIGFYYDKDVWSKLVQRGMNGDYSWEKAAEKYMRVYSNI 475          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_THEM4 (Glycogen synthase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=glgA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.696e-20
Identity = 56/160 (35.00%), Postives = 88/160 (55.00%), Query Frame = 3
Query:   12 HFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTV----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL--AEMMKNGMAQDLSWKGPAKKW 473
            + +  ++Q ++LGTG +  E+  ++ +  +P+      KF+I LA  I A +D  L+PSR+EPCGL Q++++ YGT+PIV  TGGL DTV    E   TG   G    D         + +   V RAL  Y  + +   +++ N M  DLSW+  AK++
Sbjct:  318 YIVNYDIQFVILGTGDEKYEEMFKKAQQEFPKNVSANVKFDINLAQKIYAASDMFLMPSRYEPCGLGQMYSLRYGTIPIVRYTGGLADTVLEYDENKMTGNGFGFVEYDS--------SKLLKAVARALDFYKNKKVHWKKLIDNAMKTDLSWERSAKEY 469          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPT (Glycogen synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.696e-20
Identity = 61/167 (36.53%), Postives = 87/167 (52.10%), Query Frame = 3
Query:    3 AIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVD--PVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKWEETLLNL 494
            A+P  I    Q+ +LG+G   +E+        YP +   V  ++  LAH I AGAD +L+PSRFEPCGL QL A+ YG VP+VA  GGL DTV +     +M + +     V   PV   A+     +  A +    A   +  NGM  D+SWK PA+ + +   +L
Sbjct:  316 ALPQLIGGGAQLALLGSGDAELEQGYAAAARKYPGQVGAVIGYDEALAHQIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVD---ANEMATATGVATGVQFAPVTTDALIKAFGKTRALFADVVAWRNLQINGMTTDVSWKNPAQHYAKLYRDL 479          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPA (Glycogen synthase OS=Rhodopseudomonas palustris GN=glgA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.696e-20
Identity = 61/167 (36.53%), Postives = 87/167 (52.10%), Query Frame = 3
Query:    3 AIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVD--PVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKWEETLLNL 494
            A+P  I    Q+ +LG+G   +E+        YP +   V  ++  LAH I AGAD +L+PSRFEPCGL QL A+ YG VP+VA  GGL DTV +     +M + +     V   PV   A+     +  A +    A   +  NGM  D+SWK PA+ + +   +L
Sbjct:  316 ALPQLIGGGAQLALLGSGDAELEQGYAAAARKYPGQVGAVIGYDEALAHQIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVD---ANEMATATGVATGVQFAPVTTDALIKAFGKTRALFADVVAWRNLQINGMTTDVSWKNPAQHYAKLYRDL 479          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_CLOPE (Glycogen synthase OS=Clostridium perfringens GN=glgA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.696e-20
Identity = 60/157 (38.22%), Postives = 84/157 (53.50%), Query Frame = 3
Query:   18 IKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEE 479
            ++ NVQ+++LGTG    E   + L+ LYP K     KF+  LAH I A +D  L+PS FEPCGL QL A+ YG +PIV  TGGL DT+     +TG   G    +    D + V      +  AL TY  + +   ++   M  D SW   A+K++E
Sbjct:  325 LQRNVQLVILGTGDYNYENHFKGLQELYPTKVSANIKFDNGLAHRIYASSDIFLMPSLFEPCGLGQLIALRYGAIPIVRETGGLKDTIHSYNKYTGIGNGFSFTNYNHNDLMHV------IELALETYDDKEIWRSLIIQAMDSDNSWNKSAEKYKE 475          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA2_GEOSL (Glycogen synthase 2 OS=Geobacter sulfurreducens GN=glgA2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.696e-20
Identity = 68/171 (39.77%), Postives = 89/171 (52.05%), Query Frame = 3
Query:    6 IPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAK------FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTV-------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 476
            +P   +  +Q ++LGTG          LE L   +++G A       FN PLA  I AG+D  L+PSRFEPCGL QL AM YGTVP+V  TGGL DTV        EG TGF    F+ D          A    + RALA Y   ++   +M+ GM +D+SW   A ++E
Sbjct:  319 LPRLAESELQFVLLGTGNACY------LERLNSFRSKGAANISINLGFNDPLAPKIYAGSDLFLMPSRFEPCGLSQLIAMRYGTVPVVRHTGGLRDTVVDVTRHPREG-TGFTFEDFTAD----------ACWEAIERALAGYRDRESWRRIMRRGMHRDVSWHNAAGRYE 472          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_RHOS4 (Glycogen synthase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=glgA PE=3 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.520e-20
Identity = 52/154 (33.77%), Postives = 82/154 (53.25%), Query Frame = 3
Query:    6 IPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPA 464
            +P FI     + VLGTG  P+E  + +LE+ +P +      ++  L+H++ AG D +L+PSRFEPCGL Q++ + YG +P+VA TGGL DT+        M +         P +  A +  +RR +  Y   A  E + +N M   + W+  A
Sbjct:  314 LPDFIAAGGGLAVLGTGDAPLEAAMRELEVRFPGRVGVRIGYDEGLSHLMFAGGDAVLVPSRFEPCGLTQMYGLRYGAIPVVALTGGLADTIINA-NPAAMAAGCATGLTFHPTEPPAFAEALRRLIHLYADPAAWETVQRNAMRHPVGWETSA 466          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_RHILW (Glycogen synthase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=glgA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.520e-20
Identity = 54/148 (36.49%), Postives = 84/148 (56.76%), Query Frame = 3
Query:   33 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 473
            +++VLG+G+  +E  L      +P +      +N P++H++ AG D I+IPSRFEPCGL QL+ + YG VPIVA TGGL DTV +          +   +   PV    +   +RRA+  Y  + L  ++ K GM  D+SW+  A+++
Sbjct:  322 KLVVLGSGEAALEGALLASASRHPGRIGVSIGYNEPMSHLMQAGCDAIIIPSRFEPCGLTQLYGLRYGCVPIVARTGGLNDTVIDANHAALAAKVATGIQ-FSPVTETGMLQAIRRAMHFYADRKLWTQLQKQGMKSDVSWEKSAERY 468          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_RHIEC (Glycogen synthase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=glgA PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.520e-20
Identity = 55/148 (37.16%), Postives = 84/148 (56.76%), Query Frame = 3
Query:   33 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 473
            +++VLG+G+  +E  L       P +      +N P++H++ AG D I+IPSRFEPCGL QL+A+ YG VPIVA TGGL DTV +          +   +   PV    +   +RRA+  Y  + L  ++ K GM  D+SW+  A+++
Sbjct:  322 KLVVLGSGEAALEGALLASASRNPGRIGVSIGYNEPMSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCVPIVARTGGLNDTVIDANHAALAAKVATGIQ-FSPVTETGMLQAIRRAMHFYADRKLWTQLQKQGMKSDVSWEKSAERY 468          
BLAST of DR908122 vs. ExPASy Swiss-Prot
Match: GLGA_RHIE6 (Glycogen synthase OS=Rhizobium etli (strain CIAT 652) GN=glgA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.520e-20
Identity = 54/148 (36.49%), Postives = 84/148 (56.76%), Query Frame = 3
Query:   33 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMHYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 473
            +++VLG+G+  +E  L      +P +      +N P++H++ AG D I+IPSRFEPCGL QL+ + YG VPIVA TGGL DTV +          +   +   PV    +   +RRA+  Y  + L  ++ K GM  D+SW+  A+++
Sbjct:  322 KLVVLGSGEAALEGALLASASRHPGRIGVSIGYNEPMSHLMQAGCDAIIIPSRFEPCGLTQLYGLRYGCVPIVARTGGLNDTVIDANHAALAAKVATGIQ-FSPVTETGLLQAIRRAMHFYADRKLWTQLQKQGMKSDVSWEKSAERY 468          
The following BLAST results are available for this feature:
BLAST of DR908122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA_CLONN2.064e-2037.35Glycogen synthase OS=Clostridium novyi (strain NT)... [more]
GLGA_THEM42.696e-2035.00Glycogen synthase OS=Thermosipho melanesiensis (st... [more]
GLGA_RHOPT2.696e-2036.53Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_RHOPA2.696e-2036.53Glycogen synthase OS=Rhodopseudomonas palustris GN... [more]
GLGA_CLOPE2.696e-2038.22Glycogen synthase OS=Clostridium perfringens GN=gl... [more]
GLGA2_GEOSL2.696e-2039.77Glycogen synthase 2 OS=Geobacter sulfurreducens GN... [more]
GLGA_RHOS43.520e-2033.77Glycogen synthase OS=Rhodobacter sphaeroides (stra... [more]
GLGA_RHILW3.520e-2036.49Glycogen synthase OS=Rhizobium leguminosarum bv. t... [more]
GLGA_RHIEC3.520e-2037.16Glycogen synthase OS=Rhizobium etli (strain CFN 42... [more]
GLGA_RHIE63.520e-2036.49Glycogen synthase OS=Rhizobium etli (strain CIAT 6... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16250 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-35_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908122 ID=DR908122; Name=DR908122; organism=Citrus sinensis; type=EST; length=718bp
CTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAATAGTCCTTGGT
ACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAGTTGGAGATACTGTA
CCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATATTCCTCTGGCGCATA
TGATAATAGCAGGAGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCT
TGTGGTCTCATTCAATTACATGCCATGCATTATGGAACCGTACCTATCGT
GGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGAT
TCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGAT
GTGGCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTAC
TCAAGCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCAT
GGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTT
GCTGGTAGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAA
GGAAAATGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTAT
TTTGGACCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTACT
TAGGAAATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCATAA
TGGTTTGGAGTTGAGACA
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