DR908116

Overview
NameDR908116
Unique NameDR908116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS22_NEUCR (40S ribosomal protein S22 OS=Neurospora crassa GN=rps-22 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.462e-29
Identity = 59/125 (47.20%), Postives = 90/125 (72.00%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            +L+DAL +I NAE+ GK  V ++P S V+  FL +M+  GYI +F+  D HR GKI V+L GR+N C  ++ R +VR  E+E + V+ LP RQ+GYV++TT  G++DHEEA R++V G+++G+F+
Sbjct:    6 VLHDALNSINNAEKAGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEEVDDHRSGKIVVQLNGRMNKCGVISPRYNVRLAELEKWVVKLLPARQFGYVILTTSAGIMDHEEARRKHVSGKIIGFFY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS15A_STRPU (40S ribosomal protein S15a OS=Strongylocentrotus purpuratus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 7.134e-29
Identity = 63/124 (50.81%), Postives = 87/124 (70.16%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF 491
            +L DALR+I NAE+R K  V ++P S V   FL +M   GYI +F++ D HR GKI V L GR+N C  ++ R DV   E+E +T   LP+RQ+GYVV+TT  G++DHEEA R++VGG++LG+F
Sbjct:    6 VLADALRSICNAEKRCKRQVLIRPCSKVTVKFLMVMMKHGYIGEFEIVDDHRGGKIIVNLNGRLNKCGVISPRFDVPINEMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKHVGGKILGFF 129          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS15A_RAT (40S ribosomal protein S15a OS=Rattus norvegicus GN=Rps15a PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 9.318e-29
Identity = 58/124 (46.77%), Postives = 89/124 (71.77%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF 491
            +L DAL++I NAE+RGK  V ++P S V+  FL +M   GYI +F++ D HR GKI V L GR+N C  ++ R DV+ +++E +    LP+RQ+G++V+TT  G++DHEEA R++ GG++LG+F
Sbjct:    6 VLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFF 129          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS15A_MOUSE (40S ribosomal protein S15a OS=Mus musculus GN=Rps15a PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 9.318e-29
Identity = 58/124 (46.77%), Postives = 89/124 (71.77%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF 491
            +L DAL++I NAE+RGK  V ++P S V+  FL +M   GYI +F++ D HR GKI V L GR+N C  ++ R DV+ +++E +    LP+RQ+G++V+TT  G++DHEEA R++ GG++LG+F
Sbjct:    6 VLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFF 129          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS15A_HUMAN (40S ribosomal protein S15a OS=Homo sapiens GN=RPS15A PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 9.318e-29
Identity = 58/124 (46.77%), Postives = 89/124 (71.77%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF 491
            +L DAL++I NAE+RGK  V ++P S V+  FL +M   GYI +F++ D HR GKI V L GR+N C  ++ R DV+ +++E +    LP+RQ+G++V+TT  G++DHEEA R++ GG++LG+F
Sbjct:    6 VLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFF 129          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS15A_BOVIN (40S ribosomal protein S15a OS=Bos taurus GN=RPS15A PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.318e-29
Identity = 58/124 (46.77%), Postives = 89/124 (71.77%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF 491
            +L DAL++I NAE+RGK  V ++P S V+  FL +M   GYI +F++ D HR GKI V L GR+N C  ++ R DV+ +++E +    LP+RQ+G++V+TT  G++DHEEA R++ GG++LG+F
Sbjct:    6 VLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFF 129          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS15A_ICTPU (40S ribosomal protein S15a OS=Ictalurus punctatus GN=rps15a PE=2 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.217e-28
Identity = 59/124 (47.58%), Postives = 88/124 (70.97%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF 491
            +L DAL+ I NAE+RGKA V ++P S V+  FL +M   GYI +F++ D HR GKI V L GR+N C  ++ R DV+ +++E +    LP+RQ+G++V+TT  G++DHEEA R++ GG+ LG+F
Sbjct:    6 VLADALKCINNAEKRGKAQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKSLGFF 129          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS15A_PONAB (40S ribosomal protein S15a OS=Pongo abelii GN=RPS15A PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.711e-28
Identity = 57/124 (45.97%), Postives = 88/124 (70.97%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF 491
            +L DAL++I NAE+RGK  V ++P S V+  FL +M   GYI +F++ D HR GKI V L GR+N C  ++ R DV+ +++E +     P+RQ+G++V+TT  G++DHEEA R++ GG++LG+F
Sbjct:    6 VLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLFPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFF 129          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS22_ASHGO (40S ribosomal protein S22 OS=Ashbya gossypii GN=RPS22A PE=3 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 6.039e-28
Identity = 58/125 (46.40%), Postives = 87/125 (69.60%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            +L DAL AI NAE+ GK  V ++P S V+  FL +M+  GYI +F+  D HR GKI V+L GR+N C  ++ R +V+  ++E +T   LP RQ+GYV++TT  G++DHEEA R++V G++LG+ +
Sbjct:    6 VLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLTGRLNKCGVISPRFNVKINDVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKHVAGKILGFVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS22B_YEAST (40S ribosomal protein S22-B OS=Saccharomyces cerevisiae GN=RPS22B PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 6.039e-28
Identity = 60/125 (48.00%), Postives = 87/125 (69.60%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            +L DAL AI NAE+ GK  V L+P S V+  FL +M+  GYI +F+  D HR GKI V+L GR+N C  ++ R +V+  +IE +T   LP RQ+GYV++TT  G++DHEEA R++V G++LG+ +
Sbjct:    6 VLADALNAINNAEKTGKRQVLLRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130          
The following BLAST results are available for this feature:
BLAST of DR908116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS22_NEUCR5.462e-2947.2040S ribosomal protein S22 OS=Neurospora crassa GN=... [more]
RS15A_STRPU7.134e-2950.8140S ribosomal protein S15a OS=Strongylocentrotus p... [more]
RS15A_RAT9.318e-2946.7740S ribosomal protein S15a OS=Rattus norvegicus GN... [more]
RS15A_MOUSE9.318e-2946.7740S ribosomal protein S15a OS=Mus musculus GN=Rps1... [more]
RS15A_HUMAN9.318e-2946.7740S ribosomal protein S15a OS=Homo sapiens GN=RPS1... [more]
RS15A_BOVIN9.318e-2946.7740S ribosomal protein S15a OS=Bos taurus GN=RPS15A... [more]
RS15A_ICTPU1.217e-2847.5840S ribosomal protein S15a OS=Ictalurus punctatus ... [more]
RS15A_PONAB2.711e-2845.9740S ribosomal protein S15a OS=Pongo abelii GN=RPS1... [more]
RS22_ASHGO6.039e-2846.4040S ribosomal protein S22 OS=Ashbya gossypii GN=RP... [more]
RS22B_YEAST6.039e-2848.0040S ribosomal protein S22-B OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16244 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-35_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908116 ID=DR908116; Name=DR908116; organism=Citrus sinensis; type=EST; length=719bp
GCAATTTGGTTTAAATATCAGAAGAACTGGCTTTCCTTTGTCGAAAACCC
TTTACCTGAGACGGGCGTGAAAGCCTTGCGGTGTTGCTATTTGCAGTGCA
GACGGTGATGGGGAGGAGGATATTAAATGATGCTTTGAGAGCAATAGTGA
ATGCAGAGAGGAGGGGCAAAGCTACTGTTGAGTTGCAGCCAATCTCTACT
GTCATGTCTTCTTTTCTTAATATCATGAAATATCGAGGATACATCAAGGA
TTTTCAGTTGTATGACCCACATAGGGTGGGCAAGATCAAAGTTGAACTAC
TAGGCAGGGTAAATGATTGTCGAGCTCTCACTTATAGGCAGGACGTCAGG
GCAAGGGAAATTGAAGGGTACACGGTGCGTGCTCTTCCAACTAGACAGTG
GGGCTATGTTGTGATAACAACTCCGGATGGTGTTTTGGACCATGAAGAGG
CCCTGAGGCGGAATGTGGGTGGCCAAGTTCTCGGTTATTTTCATTAGACA
TCTTTGCCATCCAAACAATTTGGAAAGGAAGGAAAGAGTTCTTTAACGGA
GTTGCAGCCTGCAAGAATGTGTTAAAACTTTTAAGTAGAGACCATTTCAA
TTTTGTAGTATTTCAGCTGAATGATAGAACAGGAGGTGAAACAACCTCTC
TTCATGAAGTGTTTTGTATCTTCATGGACCAGTTGTGATTTATTGTAATT
TAAAAGTGCAGCATTGTTT
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