DR908116

Overview
NameDR908116
Unique NameDR908116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS15A_DICDI (40S ribosomal protein S15a OS=Dictyostelium discoideum GN=rps15a PE=2 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 6.039e-28
Identity = 58/125 (46.40%), Postives = 88/125 (70.40%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            +LND L +IVNAER+GK  V ++P S V+  FL +M  + YI +F++ D HR GKI ++L+GR+N C  ++ R DV   EIE +    LP+RQ+G++V+TT  G++DH EA  R+ GG++LG+F+
Sbjct:    6 VLNDCLNSIVNAERQGKRQVLVRPSSKVIVKFLEVMMKKRYIGEFEIVDDHRSGKIVIDLIGRINKCGVISPRFDVTLDEIEKWASYLLPSRQFGHIVLTTSLGIMDHNEAKTRHTGGKLLGFFY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS22_CANGA (40S ribosomal protein S22 OS=Candida glabrata GN=RPS22 PE=3 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.030e-27
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            +L DAL AI NAE+ GK  V ++P S V+  FL +M+  GYI +F+  D HR GKI V+L GR+N C  ++ R +V+  +IE +T   LP RQ+GYV++TT  G++DHEEA R++V G++LG+ +
Sbjct:    6 VLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQRHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS22A_YEAST (40S ribosomal protein S22-A OS=Saccharomyces cerevisiae GN=RPS22A PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.030e-27
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            +L DAL AI NAE+ GK  V ++P S V+  FL +M+  GYI +F+  D HR GKI V+L GR+N C  ++ R +V+  +IE +T   LP RQ+GYV++TT  G++DHEEA R++V G++LG+ +
Sbjct:    6 VLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS22_KLUMA (40S ribosomal protein S22 OS=Kluyveromyces marxianus GN=RPS22 PE=3 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 1.345e-27
Identity = 58/125 (46.40%), Postives = 87/125 (69.60%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            +L DAL AI NAE+ GK  V ++P S V+  FL +M+  GYI +F+  D HR GKI V+L GR+N C  ++ R +V+  ++E +T   LP RQ+GYV++TT  G++DHEEA R++V G++LG+ +
Sbjct:    6 VLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKISDVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKHVSGKILGFVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS22_KLULA (40S ribosomal protein S22 OS=Kluyveromyces lactis GN=RPS22 PE=3 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 1.345e-27
Identity = 58/125 (46.40%), Postives = 87/125 (69.60%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            +L DAL AI NAE+ GK  V ++P S V+  FL +M+  GYI +F+  D HR GKI V+L GR+N C  ++ R +V+  ++E +T   LP RQ+GYV++TT  G++DHEEA R++V G++LG+ +
Sbjct:    6 VLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIADVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKHVSGKILGFVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS22_CANAL (40S ribosomal protein S22 OS=Candida albicans GN=RPS22A PE=3 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 2.295e-27
Identity = 59/125 (47.20%), Postives = 86/125 (68.80%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            +L DAL AI NAE+ GK  V ++P S V+  FL +M+  GYI +F+  D HR GKI V+L GR+N C  +  R +V+  +IE +T   LP RQ+GYV++TT  G++DHEEA R++V G++LG+ +
Sbjct:    6 VLADALNAINNAEKTGKRQVLIRPSSKVIIKFLTVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVIQPRFNVKINDIERWTDNLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS15A_PARLI (40S ribosomal protein S15a OS=Paracentrotus lividus GN=RPS15A PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.915e-27
Identity = 61/124 (49.19%), Postives = 85/124 (68.55%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF 491
            +L  ALR I NAE+R K  V ++P S V   FL +M   GYI +F++ D HR GKI V L GR+N C  ++ R DV   ++E +T   LP+RQ+GYVV+TT  G++DHEEA R++VGG++LG+F
Sbjct:    6 VLAAALRCICNAEKRCKRQVLIRPCSKVTIKFLMVMIKHGYIGEFEVVDDHRGGKIIVNLNGRLNKCGVISPRFDVPINDMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKHVGGKILGFF 129          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS22_AGABI (40S ribosomal protein S22 OS=Agaricus bisporus GN=rps22 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.328e-26
Identity = 59/125 (47.20%), Postives = 86/125 (68.80%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            +LND L++I NA RRGK  V ++P S V+  FL++M+  GYI +F++ D HR GKI V+L GR+N    ++ R +V+   IE +    LP+R  G +V+TT  G+LDHEEA R+NVGG++LGY +
Sbjct:    6 VLNDCLKSICNASRRGKRQVIVRPSSKVVVKFLSVMQRHGYIGEFEIIDDHRGGKIIVQLNGRLNKTGVISPRFNVQHNRIEQWINYLLPSRGIGIIVLTTSSGILDHEEARRKNVGGKLLGYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS22_SCHPO (40S ribosomal protein S22 OS=Schizosaccharomyces pombe GN=rps22a PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 54/125 (43.20%), Postives = 84/125 (67.20%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            +L D L  IVNAERRG+  V ++P S V+  FL +M+  GYI +F   D HR GKI ++L GR+N C  ++ R +V+ ++IE +  + LP+RQ G +V+TT  G++ H EA  ++ GG++LG+F+
Sbjct:    6 VLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METBU (30S ribosomal protein S8P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps8p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 49/124 (39.52%), Postives = 73/124 (58.87%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L DAL  I NAE  GK +  ++P S ++ + L +M  RGYI DF+  +  + G   VEL+GR+N C A+  R  V   E E +  + LP + +G +++TTP GV+   EA   NVGGQ+L + +
Sbjct:    7 LADALSIIKNAEAVGKDSCTIRPASKLIGNVLKVMNDRGYIGDFEFVEDGKAGVYTVELIGRINKCGAIKPRYSVGVTEFERWEKQFLPAKNFGVLILTTPKGVISQYEARENNVGGQLLSFVY 130          
The following BLAST results are available for this feature:
BLAST of DR908116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS15A_DICDI6.039e-2846.4040S ribosomal protein S15a OS=Dictyostelium discoi... [more]
RS22_CANGA1.030e-2747.2040S ribosomal protein S22 OS=Candida glabrata GN=R... [more]
RS22A_YEAST1.030e-2747.2040S ribosomal protein S22-A OS=Saccharomyces cerev... [more]
RS22_KLUMA1.345e-2746.4040S ribosomal protein S22 OS=Kluyveromyces marxian... [more]
RS22_KLULA1.345e-2746.4040S ribosomal protein S22 OS=Kluyveromyces lactis ... [more]
RS22_CANAL2.295e-2747.2040S ribosomal protein S22 OS=Candida albicans GN=R... [more]
RS15A_PARLI3.915e-2749.1940S ribosomal protein S15a OS=Paracentrotus lividu... [more]
RS22_AGABI4.328e-2647.2040S ribosomal protein S22 OS=Agaricus bisporus GN=... [more]
RS22_SCHPO3.664e-2543.2040S ribosomal protein S22 OS=Schizosaccharomyces p... [more]
RS8_METBU6.053e-2039.5230S ribosomal protein S8P OS=Methanococcoides burt... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16244 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-35_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908116 ID=DR908116; Name=DR908116; organism=Citrus sinensis; type=EST; length=719bp
GCAATTTGGTTTAAATATCAGAAGAACTGGCTTTCCTTTGTCGAAAACCC
TTTACCTGAGACGGGCGTGAAAGCCTTGCGGTGTTGCTATTTGCAGTGCA
GACGGTGATGGGGAGGAGGATATTAAATGATGCTTTGAGAGCAATAGTGA
ATGCAGAGAGGAGGGGCAAAGCTACTGTTGAGTTGCAGCCAATCTCTACT
GTCATGTCTTCTTTTCTTAATATCATGAAATATCGAGGATACATCAAGGA
TTTTCAGTTGTATGACCCACATAGGGTGGGCAAGATCAAAGTTGAACTAC
TAGGCAGGGTAAATGATTGTCGAGCTCTCACTTATAGGCAGGACGTCAGG
GCAAGGGAAATTGAAGGGTACACGGTGCGTGCTCTTCCAACTAGACAGTG
GGGCTATGTTGTGATAACAACTCCGGATGGTGTTTTGGACCATGAAGAGG
CCCTGAGGCGGAATGTGGGTGGCCAAGTTCTCGGTTATTTTCATTAGACA
TCTTTGCCATCCAAACAATTTGGAAAGGAAGGAAAGAGTTCTTTAACGGA
GTTGCAGCCTGCAAGAATGTGTTAAAACTTTTAAGTAGAGACCATTTCAA
TTTTGTAGTATTTCAGCTGAATGATAGAACAGGAGGTGAAACAACCTCTC
TTCATGAAGTGTTTTGTATCTTCATGGACCAGTTGTGATTTATTGTAATT
TAAAAGTGCAGCATTGTTT
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