DR908116

Overview
NameDR908116
Unique NameDR908116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_THESM (30S ribosomal protein S8P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps8p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 47/124 (37.90%), Postives = 79/124 (63.71%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  I N+E+ GK+ V ++P S ++   L +M+  GYI +F+  D  R G  +V+LLG+VN   A+  R  V+A+E E +  R LP  ++G +V++T  GV+ H+EAL + +GG+++ Y +
Sbjct:    7 LANALSHITNSEKVGKSEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLLGKVNKAGAIKPRFSVKAKEYEKWEKRFLPAFEFGILVVSTSQGVMTHKEALEKGIGGRLIAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METKA (30S ribosomal protein S8P OS=Methanopyrus kandleri GN=rps8p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 48/124 (38.71%), Postives = 72/124 (58.06%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L DA+  I N E  G     ++P S ++   L +M+  GYI  F+  D  R GK  V+L+GR+NDC  +  R  V+  E E +  R LP R +G +++TTP+GV+ H EA  R +GG++L Y +
Sbjct:    7 LADAMATIKNNEMVGNKECVIEPASKLIGRVLKVMQEYGYIGSFEFIDDGRSGKFLVKLVGRINDCGVIKPRHPVKKDEWEYWEQRYLPARDFGLLIVTTPEGVMSHYEAKERGIGGRLLAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_HALWD (30S ribosomal protein S8P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps8p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 50/128 (39.06%), Postives = 72/128 (56.25%), Query Frame = 3
Query:  111 GRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            G   L +AL  + NAE  G  + E+QP S V+ S L +   RGYI  F+  D  + G+ +VEL G +N+C A+  R    A E E +  R LP R +G +++TT  GV+ H EA    +GGQV+ Y +
Sbjct:    3 GNDPLANALSGVDNAESVGHLSHEIQPASNVIGSVLEVFYDRGYINGFEFVDDGKAGRFEVELSGGINECGAVKPRYSAGADEFERWEKRYLPARDYGALIVTTSHGVMSHYEARETGIGGQVIAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_THEON (30S ribosomal protein S8P OS=Thermococcus onnurineus (strain NA1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 45/124 (36.29%), Postives = 78/124 (62.90%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  I N+ER GK  V ++P S ++   L +M+  GYI +F+  D  R G  +V+L+G++N   A+  R  V+ARE E +  R LP  ++G ++++T  GV+ H+EA+ + +GG+++ Y +
Sbjct:    7 LANALSHITNSERVGKKEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLIGKINKAGAIKPRFPVKAREYEAWEKRFLPAFEFGILIVSTSQGVMTHKEAIEKGIGGRLIAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METJA (30S ribosomal protein S8P OS=Methanocaldococcus jannaschii GN=rps8p PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 48/124 (38.71%), Postives = 75/124 (60.48%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  I N ER GK  V ++P S ++   L +M+  GYI +F+  +  R G  KVEL+G++N C A+  R  V+    E +  R LP R +G ++++T  GV+ HEEA +R +GG++L Y +
Sbjct:    7 LANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRFPVKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_PYRKO (30S ribosomal protein S8P OS=Pyrococcus kodakaraensis GN=rps8p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 46/124 (37.10%), Postives = 78/124 (62.90%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  I N+ER GK  V ++P S ++   L +M   GYI +F+L D  R G  +V+L+G++N   A+  R  V+AR+ E +  R LP  ++G ++++T  GV+ H+EAL + +GG+++ Y +
Sbjct:    7 LANALSHITNSERVGKKEVYIKPASKLIGEVLRVMLENGYIGEFELIDDGRAGIYRVQLIGKINKAGAIKPRFPVKARDYEKWEKRFLPAFEFGILIVSTSQGVMTHKEALEKGIGGRLIAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METLZ (30S ribosomal protein S8P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps8p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 45/120 (37.50%), Postives = 72/120 (60.00%), Query Frame = 3
Query:  129 DALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGY 488
            DA+ AI NA   GK  V ++P S +    L +M+  GYI  F+  D  R G+ ++ L G +N C  +T R  V+  ++E + +R LP + +G +++TT  GV+ HE+A +  VGG++LGY
Sbjct:    9 DAMSAIKNAGDTGKLAVTVEPASRLFGDMLKVMQEYGYITGFEKIDDGRGGQFQIALSGGINKCGVITPRFSVKVEDLESWEIRYLPGKGFGIIILTTSKGVMSHEQARKLGVGGELLGY 128          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METS5 (30S ribosomal protein S8P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps8p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 48/127 (37.80%), Postives = 78/127 (61.42%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRARE---IEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L++AL ++ N E R      + P S ++ + L +M+  GY+ +F+  D  R GKI V+L+GR+N C A+T R  +  RE   +  Y  R LP+++ G ++++TP GV+ H+EA R+  GG VLGY +
Sbjct:    7 LSNALSSLYNNEMRRNKQAIIMPSSKLIVNVLRVMQKEGYVGEFEYIDDGRWGKILVQLMGRINKCGAITPRYSLTYREMISLPDYIRRYLPSKEIGVIIVSTPKGVMTHKEAARQRTGGIVLGYVY 133          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_ARCFU (30S ribosomal protein S8P OS=Archaeoglobus fulgidus GN=rps8p PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 48/124 (38.71%), Postives = 75/124 (60.48%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L++A+ AI NAE  G+   E++P S ++ + L +MK  GYIK F+  + HR GK  VEL G +NDC A+  R      E E Y  R LP R +G ++++T  GV+  ++A ++ +GG +L Y +
Sbjct:    6 LSNAMIAIKNAEMVGEKKCEIKPASKLIGNVLKVMKDYGYIKGFEYVENHRGGKFIVELSGNINDCGAIRPRFSSSVTEYEMYEKRYLPARDFGILIVSTTKGVMSQKDARKQRLGGVLLAYVY 129          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_PYRFU (30S ribosomal protein S8P OS=Pyrococcus furiosus GN=rps8p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 45/124 (36.29%), Postives = 76/124 (61.29%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  I N+ER GK  V ++P S ++   L +M+  GYI +F+  D  R G  +V+LLGR+N   A+  R  V+  E E +  R LP  ++G ++++T  GV+ H+EA+ + +GG+++ Y +
Sbjct:    7 LANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGRINKAGAIKPRFPVKVSEFEKWEKRFLPAFEFGILIVSTSQGVMSHKEAIEKGIGGRLIAYVY 130          
The following BLAST results are available for this feature:
BLAST of DR908116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_THESM7.906e-2037.9030S ribosomal protein S8P OS=Thermococcus sibiricu... [more]
RS8_METKA7.906e-2038.7130S ribosomal protein S8P OS=Methanopyrus kandleri... [more]
RS8_HALWD7.906e-2039.0630S ribosomal protein S8P OS=Haloquadratum walsbyi... [more]
RS8_THEON1.033e-1936.2930S ribosomal protein S8P OS=Thermococcus onnurine... [more]
RS8_METJA1.033e-1938.7130S ribosomal protein S8P OS=Methanocaldococcus ja... [more]
RS8_PYRKO1.761e-1937.1030S ribosomal protein S8P OS=Pyrococcus kodakaraen... [more]
RS8_METLZ2.300e-1937.5030S ribosomal protein S8P OS=Methanocorpusculum la... [more]
RS8_METS53.004e-1937.8030S ribosomal protein S8P OS=Metallosphaera sedula... [more]
RS8_ARCFU3.924e-1938.7130S ribosomal protein S8P OS=Archaeoglobus fulgidu... [more]
RS8_PYRFU5.125e-1936.2930S ribosomal protein S8P OS=Pyrococcus furiosus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16244 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-35_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908116 ID=DR908116; Name=DR908116; organism=Citrus sinensis; type=EST; length=719bp
GCAATTTGGTTTAAATATCAGAAGAACTGGCTTTCCTTTGTCGAAAACCC
TTTACCTGAGACGGGCGTGAAAGCCTTGCGGTGTTGCTATTTGCAGTGCA
GACGGTGATGGGGAGGAGGATATTAAATGATGCTTTGAGAGCAATAGTGA
ATGCAGAGAGGAGGGGCAAAGCTACTGTTGAGTTGCAGCCAATCTCTACT
GTCATGTCTTCTTTTCTTAATATCATGAAATATCGAGGATACATCAAGGA
TTTTCAGTTGTATGACCCACATAGGGTGGGCAAGATCAAAGTTGAACTAC
TAGGCAGGGTAAATGATTGTCGAGCTCTCACTTATAGGCAGGACGTCAGG
GCAAGGGAAATTGAAGGGTACACGGTGCGTGCTCTTCCAACTAGACAGTG
GGGCTATGTTGTGATAACAACTCCGGATGGTGTTTTGGACCATGAAGAGG
CCCTGAGGCGGAATGTGGGTGGCCAAGTTCTCGGTTATTTTCATTAGACA
TCTTTGCCATCCAAACAATTTGGAAAGGAAGGAAAGAGTTCTTTAACGGA
GTTGCAGCCTGCAAGAATGTGTTAAAACTTTTAAGTAGAGACCATTTCAA
TTTTGTAGTATTTCAGCTGAATGATAGAACAGGAGGTGAAACAACCTCTC
TTCATGAAGTGTTTTGTATCTTCATGGACCAGTTGTGATTTATTGTAATT
TAAAAGTGCAGCATTGTTT
back to top