DR908116

Overview
NameDR908116
Unique NameDR908116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_PYRHO (30S ribosomal protein S8P OS=Pyrococcus horikoshii GN=rps8p PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.693e-19
Identity = 46/124 (37.10%), Postives = 76/124 (61.29%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  I N+ER GK  + ++P S ++   L +M+  GYI +F+  D  R G  +V+LLGR+N   A+  R  V+A E E +  R LP  ++G ++++T  GV+ H+EA  R +GG+++ Y +
Sbjct:    7 LANALSHITNSERVGKREIYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGRINKAGAIKPRFPVKATEYEKWEKRFLPAFEFGILIVSTSQGVMSHKEARDRGIGGRLIAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_PYRAB (30S ribosomal protein S8P OS=Pyrococcus abyssi GN=rps8p PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.693e-19
Identity = 45/124 (36.29%), Postives = 77/124 (62.10%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  I N+ER GK  V ++P S ++   L +M+  GYI +F+  D  R G  +V+LLG++N   A+  R  V+AR+ E +  R LP  ++G ++++T  GV+ H+EA  + +GG+++ Y +
Sbjct:    7 LANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKGIGGRLIAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_PICTO (30S ribosomal protein S8P OS=Picrophilus torridus GN=rps8p PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.693e-19
Identity = 45/124 (36.29%), Postives = 72/124 (58.06%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            LND +  I NA R GK+ V + P S ++   L +M+   YIK F++ +  R GK +VEL   +N+C  +  R  V+   IE Y  R LP + +G +++TT  G++ H EA +  +GG++L Y +
Sbjct:    6 LNDVINTIKNASRIGKSEVIIGPASVMIGRILKVMQDYNYIKSFEVIEEERGGKFRVELSDTINNCGVIKPRLSVKNSNIERYESRYLPAQDFGIIILTTTKGIMSHIEARKLGIGGKLLAYVY 129          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METIG (30S ribosomal protein S8P OS=Methanococcus igneus GN=rps8p PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.693e-19
Identity = 43/124 (34.68%), Postives = 73/124 (58.87%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  + N ER GK    ++P S ++   L +M+  GYI +F+  +  R G  KVEL+G++N C A+  R  V+  E E +  R LP R +G ++++T  G++ H EA  + +GG+++ Y +
Sbjct:    7 LANALNHLTNCERVGKKVFYIKPASKLIGRVLKVMQDHGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRYAVKKHEFEKFEKRYLPARDFGLLIVSTSQGIMTHYEAKEKGIGGRLISYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_UNCMA (30S ribosomal protein S8P OS=Uncultured methanogenic archaeon RC-I GN=rps8p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19
Identity = 43/124 (34.68%), Postives = 75/124 (60.48%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  I NAE  GK    + P S ++ + L +M+ +GY+ +F+  D  + G++KV+L+G++N C  +  R  V   E+E +  R LP R +G +++TT  GV+ H +A +  +GG++L Y +
Sbjct:    7 LANALSVIKNAETTGKTDCVIDPASKIIGNVLKVMQDQGYVGEFEFVDNGKAGQLKVKLIGKINKCGVVKPRFAVGKTEMEKWEKRYLPARNFGTLILTTSKGVMSHYDAAKMGIGGEILAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_HALLT (30S ribosomal protein S8P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps8p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19
Identity = 46/128 (35.94%), Postives = 71/128 (55.47%), Query Frame = 3
Query:  111 GRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            G     +AL  + NAE  G  +  ++P S ++ S L ++  RGY+  F+  D  + GK +VEL G +N+C A+  R    A E E +  R LP R +G +++TT  GV+ H EA    +GGQV+ Y +
Sbjct:    3 GNDPFTNALAGMDNAESVGHLSYTVEPASNIIGSVLEVLYDRGYVDGFEYVDDGKAGKFEVELKGAINECGAVKPRYSAGADEFEKWEKRYLPARDYGTLIVTTSHGVMSHYEAREEGIGGQVIAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METTL (30S ribosomal protein S8P OS=Methanococcus thermolithotrophicus GN=rps8p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 44/122 (36.07%), Postives = 76/122 (62.30%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGY 488
            L +AL  I N E  GK+   ++P S ++   LN+M+  GYI +F+  +  R G  KVEL+G++N C A+  R  V+ +E E +  R LP + +G ++++TP G++ H+EA  + +GG+++ Y
Sbjct:    7 LANALNHISNCEGVGKSVAYVKPASKLIGRVLNVMQDHGYIGNFEYIEDGRAGIYKVELIGQINKCGAVKPRYAVKKQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKNQGLGGRLISY 128          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_THEPD (30S ribosomal protein S8P OS=Thermofilum pendens (strain Hrk 5) GN=rps8p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 49/124 (39.52%), Postives = 72/124 (58.06%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  I+N E RGK    + P S ++ + L+ +K  GYI DF+L D  R GKI V LLGR+N    +  R  V+  E E +    LP+R  G ++++TP GV+ H EA  + +GG +L Y +
Sbjct:    6 LANALSTIMNNEVRGKKQCVIYPSSKLIVAVLDTLKRSGYIGDFELIDDGRGGKIVVNLLGRINKIGVIKPRYPVKKNEFEAWEREYLPSRDVGLLIVSTPKGVMTHREAKEKGLGGVLLAYVY 129          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_NATPD (30S ribosomal protein S8P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps8p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 47/124 (37.90%), Postives = 68/124 (54.84%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L  AL  + NAE  G     +QP S  + S L +   RGY+  FQ  D  + G+ +VEL G +N+C A+  R    A E E +  R LP R +G +++TT  GV+ H EA  + +GGQV+ Y +
Sbjct:    7 LASALSGLDNAESVGHLEQTIQPASNEIGSVLEVFYDRGYVDGFQFVDDGKAGRFEVELKGAINECGAVKPRYSAGADEFEKWEKRFLPARDYGTLIVTTSHGVMSHYEAREQGIGGQVIAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_HYPBU (30S ribosomal protein S8P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps8p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 48/127 (37.80%), Postives = 78/127 (61.42%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREI---EGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +A+ AIVNAE R K  V + P S ++++ L +M+  GYI +F+  D  R GKI+V LLGR+N    +  R  V+ +++     +  + LP+R  G ++I+T  GV+ H EA++R +GG +L Y +
Sbjct:    7 LANAMAAIVNAEMRAKPEVIIMPASKLIANVLRVMQREGYIGEFEYIDDGRWGKIRVRLLGRINKAGVIKPRFSVKYKDLIRMPDWLRKYLPSRDIGILIISTSQGVMSHREAIQRRIGGVLLAYVY 133          
The following BLAST results are available for this feature:
BLAST of DR908116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_PYRHO6.693e-1937.1030S ribosomal protein S8P OS=Pyrococcus horikoshii... [more]
RS8_PYRAB6.693e-1936.2930S ribosomal protein S8P OS=Pyrococcus abyssi GN=... [more]
RS8_PICTO6.693e-1936.2930S ribosomal protein S8P OS=Picrophilus torridus ... [more]
RS8_METIG6.693e-1934.6830S ribosomal protein S8P OS=Methanococcus igneus ... [more]
RS8_UNCMA8.741e-1934.6830S ribosomal protein S8P OS=Uncultured methanogen... [more]
RS8_HALLT8.741e-1935.9430S ribosomal protein S8P OS=Halorubrum lacusprofu... [more]
RS8_METTL1.491e-1836.0730S ribosomal protein S8P OS=Methanococcus thermol... [more]
RS8_THEPD1.947e-1839.5230S ribosomal protein S8P OS=Thermofilum pendens (... [more]
RS8_NATPD1.947e-1837.9030S ribosomal protein S8P OS=Natronomonas pharaoni... [more]
RS8_HYPBU1.947e-1837.8030S ribosomal protein S8P OS=Hyperthermus butylicu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16244 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-35_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908116 ID=DR908116; Name=DR908116; organism=Citrus sinensis; type=EST; length=719bp
GCAATTTGGTTTAAATATCAGAAGAACTGGCTTTCCTTTGTCGAAAACCC
TTTACCTGAGACGGGCGTGAAAGCCTTGCGGTGTTGCTATTTGCAGTGCA
GACGGTGATGGGGAGGAGGATATTAAATGATGCTTTGAGAGCAATAGTGA
ATGCAGAGAGGAGGGGCAAAGCTACTGTTGAGTTGCAGCCAATCTCTACT
GTCATGTCTTCTTTTCTTAATATCATGAAATATCGAGGATACATCAAGGA
TTTTCAGTTGTATGACCCACATAGGGTGGGCAAGATCAAAGTTGAACTAC
TAGGCAGGGTAAATGATTGTCGAGCTCTCACTTATAGGCAGGACGTCAGG
GCAAGGGAAATTGAAGGGTACACGGTGCGTGCTCTTCCAACTAGACAGTG
GGGCTATGTTGTGATAACAACTCCGGATGGTGTTTTGGACCATGAAGAGG
CCCTGAGGCGGAATGTGGGTGGCCAAGTTCTCGGTTATTTTCATTAGACA
TCTTTGCCATCCAAACAATTTGGAAAGGAAGGAAAGAGTTCTTTAACGGA
GTTGCAGCCTGCAAGAATGTGTTAAAACTTTTAAGTAGAGACCATTTCAA
TTTTGTAGTATTTCAGCTGAATGATAGAACAGGAGGTGAAACAACCTCTC
TTCATGAAGTGTTTTGTATCTTCATGGACCAGTTGTGATTTATTGTAATT
TAAAAGTGCAGCATTGTTT
back to top