DR908116

Overview
NameDR908116
Unique NameDR908116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_HALSA (30S ribosomal protein S8P OS=Halobacterium salinarium GN=rps8p PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 48/124 (38.71%), Postives = 69/124 (55.65%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L+DAL  I NAE  G  T  + P S ++ S L +   RGYI  F+  D  + G+ +VEL G +N+C  +  R  V A   E +  R LP R +G +V+TT  G++ H EA    +GGQV+ Y +
Sbjct:    7 LSDALSGIDNAESVGHLTHTVAPASNMVGSVLEVFYDRGYIDGFEFVDNGKAGRFEVELKGAINECGPVNPRYSVGADGFEQWEKRYLPARDYGSLVVTTSHGIMSHYEAREAGIGGQVIAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_HALS3 (30S ribosomal protein S8P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 48/124 (38.71%), Postives = 69/124 (55.65%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L+DAL  I NAE  G  T  + P S ++ S L +   RGYI  F+  D  + G+ +VEL G +N+C  +  R  V A   E +  R LP R +G +V+TT  G++ H EA    +GGQV+ Y +
Sbjct:    7 LSDALSGIDNAESVGHLTHTVAPASNMVGSVLEVFYDRGYIDGFEFVDNGKAGRFEVELKGAINECGPVNPRYSVGADGFEQWEKRYLPARDYGSLVVTTSHGIMSHYEAREAGIGGQVIAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METS3 (30S ribosomal protein S8P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps8p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 45/124 (36.29%), Postives = 72/124 (58.06%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L DAL  I N E + K +  + P S ++   L+ M+   YI +F+  D +R G+ KVEL G +N C  +  R  V+  E E +  R LP + +G +++TTP+G++ H EA  R +GG++L Y +
Sbjct:    7 LADALTNIRNNELQVKDSCVISPASKLIGEVLSTMQKENYIGNFEYIDDNRAGQFKVELEGNINKCGVIKPRHAVKKDEFEKFEKRYLPAKNFGILIVTTPEGIMTHYEAKERGIGGRLLAYMY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METTH (30S ribosomal protein S8P OS=Methanobacterium thermoautotrophicum GN=rps8p PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  I N E RG     + P S ++   L  M+  GYI +F+  D  R GK  VEL G +N C  +  R  V+  E E +  R LP + +G ++++TP+G++ H+EA  R +GG++L Y +
Sbjct:    7 LANALTNIRNNEIRGNVKCRITPASKLIGRVLRTMQKEGYIGEFEYVDDGRAGKFIVELEGNINHCGVIKPRHAVKKDEFEKFEKRYLPAKNFGIIIVSTPEGIMTHKEAKDRGIGGRLLAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METPE (30S ribosomal protein S8P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps8p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 46/122 (37.70%), Postives = 73/122 (59.84%), Query Frame = 3
Query:  129 DALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            DA+ A+ NA   GK    L+P S ++ + L IM+  GYI  F + D  R G+ +V L GR+N C A+T R  V   E+E +  R LP + +G ++++T  GVL H +A +  +GG++LG+ +
Sbjct:    9 DAMSALKNAGDCGKPECILEPSSKLLGAMLRIMQDAGYIGSFDMIDDGRGGQFRVHLSGRINKCGAITPRYSVGLDELEYWETRYLPGKNFGLLILSTSRGVLTHNQARQNGIGGELLGFVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METB6 (30S ribosomal protein S8P OS=Methanoregula boonei (strain 6A8) GN=rps8p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.338e-18
Identity = 43/122 (35.25%), Postives = 75/122 (61.48%), Query Frame = 3
Query:  129 DALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            D + A+ NA   GK+ V ++P S ++ + L IM+  GYI  F+  +  R G++KV L G++N C A+  R  V+  E+E +  + LP + +G ++++T  GV+ H +A R  +GG++LGY +
Sbjct:    9 DGMSALKNAGDTGKSEVTIEPASKLLGAMLRIMQDAGYIAGFEFIEDGRGGQLKVHLTGKINKCGAICPRFSVQLDEMEYWEKQYLPGKNFGLMILSTSHGVMSHVQARREGIGGELLGYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_THEGJ (30S ribosomal protein S8P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps8p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 43/124 (34.68%), Postives = 76/124 (61.29%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  I N+ER GK  V ++P S ++   L +M+  GYI +F+  D  R G  +V+L+G++N   A+  R  V+A+  E +  R LP  ++G ++++T  GV+ H+EA  + +GG+++ Y +
Sbjct:    7 LANALSHITNSERVGKKEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLIGKINKAGAIKPRFPVKAKNYEYWEKRFLPAFEFGILIVSTSQGVMTHKEAREKGIGGRLIAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_PYRCJ (30S ribosomal protein S8P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 48/125 (38.40%), Postives = 76/125 (60.80%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            +L++AL AI NAE  GK  V + P++ ++   L +++  GY+ + +  D  R GK  V+LLG++ND  A+  R  V+ REI  +  + LP RQ G +VI+T  GV+ H EA  + +GG +L Y +
Sbjct:    6 LLSNALTAIKNAEAMGKRQVVIWPVNKLIYYTLRVLQRYGYVGEIEYIDDGRGGKYVVQLLGKINDIGAIRPRFPVKYREIVEWEQKYLPARQIGILVISTSQGVMSHLEAKEKKIGGVLLAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METTP (30S ribosomal protein S8P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps8p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 45/124 (36.29%), Postives = 72/124 (58.06%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L DA+  I NAE  GK    ++P S +++  L +M   GYI +F+  D  + G  KV+LLGR+N C  +  R  ++  E+E +  R LP R +G ++++T  GV+ H +A  R +GG +L Y +
Sbjct:    6 LADAMSTIKNAENVGKPECIIKPASKLIAMTLKVMADLGYIGEFEFIDDGKSGMFKVKLLGRINRCGVIKPRFAIKVAELEKWERRFLPARNFGVLILSTSQGVMPHTDARARGIGGHLLAYVY 129          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_AERPE (30S ribosomal protein S8P OS=Aeropyrum pernix GN=rps8p PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 49/127 (38.58%), Postives = 76/127 (59.84%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREI---EGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +A+ AI NAE RGK    + P S ++++ L I++  GYI  F+  D  R GK +V+LLGR+ND   +  R  V  RE+     +  + L +R  G ++++TP GV+ H EAL+R +GG V+ Y +
Sbjct:    7 LANAMAAIKNAEMRGKGEAIIMPSSKLIANVLRILEKEGYIGGFEYIDDGRWGKFRVKLLGRINDIGVVKPRTPVSYRELAKMPEHLRKYLASRDVGLLILSTPQGVMTHREALKRKIGGIVIAYVY 133          
The following BLAST results are available for this feature:
BLAST of DR908116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_HALSA1.947e-1838.7130S ribosomal protein S8P OS=Halobacterium salinar... [more]
RS8_HALS31.947e-1838.7130S ribosomal protein S8P OS=Halobacterium salinar... [more]
RS8_METS32.543e-1836.2930S ribosomal protein S8P OS=Methanobrevibacter sm... [more]
RS8_METTH3.322e-1836.2930S ribosomal protein S8P OS=Methanobacterium ther... [more]
RS8_METPE3.322e-1837.7030S ribosomal protein S8P OS=Methanosphaerula palu... [more]
RS8_METB64.338e-1835.2530S ribosomal protein S8P OS=Methanoregula boonei ... [more]
RS8_THEGJ5.666e-1834.6830S ribosomal protein S8P OS=Thermococcus gammatol... [more]
RS8_PYRCJ5.666e-1838.4030S ribosomal protein S8P OS=Pyrobaculum calidifon... [more]
RS8_METTP5.666e-1836.2930S ribosomal protein S8P OS=Methanosaeta thermoph... [more]
RS8_AERPE5.666e-1838.5830S ribosomal protein S8P OS=Aeropyrum pernix GN=r... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16244 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-35_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908116 ID=DR908116; Name=DR908116; organism=Citrus sinensis; type=EST; length=719bp
GCAATTTGGTTTAAATATCAGAAGAACTGGCTTTCCTTTGTCGAAAACCC
TTTACCTGAGACGGGCGTGAAAGCCTTGCGGTGTTGCTATTTGCAGTGCA
GACGGTGATGGGGAGGAGGATATTAAATGATGCTTTGAGAGCAATAGTGA
ATGCAGAGAGGAGGGGCAAAGCTACTGTTGAGTTGCAGCCAATCTCTACT
GTCATGTCTTCTTTTCTTAATATCATGAAATATCGAGGATACATCAAGGA
TTTTCAGTTGTATGACCCACATAGGGTGGGCAAGATCAAAGTTGAACTAC
TAGGCAGGGTAAATGATTGTCGAGCTCTCACTTATAGGCAGGACGTCAGG
GCAAGGGAAATTGAAGGGTACACGGTGCGTGCTCTTCCAACTAGACAGTG
GGGCTATGTTGTGATAACAACTCCGGATGGTGTTTTGGACCATGAAGAGG
CCCTGAGGCGGAATGTGGGTGGCCAAGTTCTCGGTTATTTTCATTAGACA
TCTTTGCCATCCAAACAATTTGGAAAGGAAGGAAAGAGTTCTTTAACGGA
GTTGCAGCCTGCAAGAATGTGTTAAAACTTTTAAGTAGAGACCATTTCAA
TTTTGTAGTATTTCAGCTGAATGATAGAACAGGAGGTGAAACAACCTCTC
TTCATGAAGTGTTTTGTATCTTCATGGACCAGTTGTGATTTATTGTAATT
TAAAAGTGCAGCATTGTTT
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