DR908116

Overview
NameDR908116
Unique NameDR908116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METMP (30S ribosomal protein S8P OS=Methanococcus maripaludis GN=rps8p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 42/124 (33.87%), Postives = 75/124 (60.48%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  + N E  GK    L+P S ++   LN+M+ +GYI +F+  +  + G  KV+L+G++N C A+  R  V+  + E +  R LP + +G ++++TP G++ H+EA    VGG+++ Y +
Sbjct:    7 LANALNHVSNCESVGKNVAYLKPASKLIGRVLNVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARNAGVGGRLISYIY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METM5 (30S ribosomal protein S8P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps8p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 42/124 (33.87%), Postives = 75/124 (60.48%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  + N E  GK    L+P S ++   LN+M+ +GYI +F+  +  + G  KV+L+G++N C A+  R  V+  + E +  R LP + +G ++++TP G++ H+EA    VGG+++ Y +
Sbjct:    7 LANALNHVSNCESVGKNVAYLKPASKLIGRVLNVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARNAGVGGRLISYIY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_SULSO (30S ribosomal protein S8P OS=Sulfolobus solfataricus GN=rps8p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRARE---IEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL +I N E R      + P S ++ + L +M+  GY+ +F+  D  R GKI V+LLGRVN C  +T R  +  R+   +  Y  R LP+++ G ++++T  GV+ H+EA R  +GG  LGY +
Sbjct:    7 LANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYVRRYLPSKEIGIIIVSTSKGVMSHKEAARLRIGGVALGYVY 133          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METST (30S ribosomal protein S8P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps8p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L DAL  I N E +G  +  ++P S ++   L+ M+   YI +F+L D  + G   VEL+G +N C  +  R  V+  E E Y  R LP + +G +++TTP GV+ H EA    +GG++L Y +
Sbjct:    7 LADALTNIRNNELQGNDSCVIKPASKLIGHVLSTMQKENYIGNFELVDDGKAGIFNVELVGNINKCGVIKPRHAVKNTEFEDYEKRYLPAKNFGILIVTTPQGVMTHHEAKEAGIGGRLLVYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METM7 (30S ribosomal protein S8P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps8p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 42/124 (33.87%), Postives = 75/124 (60.48%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  + N E  GK    L+P S ++   LN+M+ +GYI +F+  +  + G  KV+L+G++N C A+  R  V+  + E +  R LP + +G ++++TP G++ H+EA    VGG+++ Y +
Sbjct:    7 LANALNHVSNCESVGKNVAYLKPASKLIGRVLNVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRFAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARNAGVGGRLISYIY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METVO (30S ribosomal protein S8P OS=Methanococcus voltae GN=rps8p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.649e-17
Identity = 43/124 (34.68%), Postives = 75/124 (60.48%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  I N E  GK T  L+P S ++   L +M+ +GYI +F+  +  + G  KV L+G++N C A+  R  V+ +E E +  R LP + +G ++++TP G++ H+EA    +GG+++ Y +
Sbjct:    7 LANALNHISNCENVGKNTAYLKPASKLIGRVLKVMQDQGYIGNFEYIEDGKAGVYKVTLIGQINKCGAVKPRFAVKNQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKDSGIGGRLISYIY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METMJ (30S ribosomal protein S8P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.649e-17
Identity = 42/122 (34.43%), Postives = 72/122 (59.02%), Query Frame = 3
Query:  129 DALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            DA+  I NA   GK  V ++P S ++ + L +M+  G+I  F+  D  R G+ +V+L G +N C A++ R  V   ++E +  + LP + +G ++++T  GV+ H EA    +GGQ+LGY +
Sbjct:    9 DAMSTIKNAGDAGKGEVIVEPASKLLGAMLRVMQENGFISGFEFIDDGRGGQFRVQLSGTINKCGAISPRFPVAMADMEYWESQYLPAKNFGILIVSTSKGVISHAEARNEGIGGQLLGYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METM6 (30S ribosomal protein S8P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps8p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.649e-17
Identity = 42/124 (33.87%), Postives = 75/124 (60.48%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  + N E  GK    L+P S ++   LN+M+ +GYI +F+  +  + G  KV+L+G++N C A+  R  V+  + E +  R LP + +G ++++TP G++ H+EA    VGG+++ Y +
Sbjct:    7 LANALNHVSNCESVGKNVAYLKPASKLIGRVLNVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRFAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARSAGVGGRLISYIY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_SULIY (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.153e-17
Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRARE---IEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL +I N E R      + P S ++ + L +M+  GY+ +F+  D  R GKI V+LLGRVN C  +T R  +  R+   +  Y  R LP+++ G ++++T  GV+ H+EA R  +GG  LGY +
Sbjct:    7 LANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_SULIN (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps8p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.153e-17
Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRARE---IEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL +I N E R      + P S ++ + L +M+  GY+ +F+  D  R GKI V+LLGRVN C  +T R  +  R+   +  Y  R LP+++ G ++++T  GV+ H+EA R  +GG  LGY +
Sbjct:    7 LANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
The following BLAST results are available for this feature:
BLAST of DR908116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_METMP7.400e-1833.8730S ribosomal protein S8P OS=Methanococcus maripal... [more]
RS8_METM57.400e-1833.8730S ribosomal protein S8P OS=Methanococcus maripal... [more]
RS8_SULSO1.262e-1737.0130S ribosomal protein S8P OS=Sulfolobus solfataric... [more]
RS8_METST1.262e-1736.2930S ribosomal protein S8P OS=Methanosphaera stadtm... [more]
RS8_METM71.262e-1733.8730S ribosomal protein S8P OS=Methanococcus maripal... [more]
RS8_METVO1.649e-1734.6830S ribosomal protein S8P OS=Methanococcus voltae ... [more]
RS8_METMJ1.649e-1734.4330S ribosomal protein S8P OS=Methanoculleus marisn... [more]
RS8_METM61.649e-1733.8730S ribosomal protein S8P OS=Methanococcus maripal... [more]
RS8_SULIY2.153e-1737.0130S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIN2.153e-1737.0130S ribosomal protein S8P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16244 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-35_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908116 ID=DR908116; Name=DR908116; organism=Citrus sinensis; type=EST; length=719bp
GCAATTTGGTTTAAATATCAGAAGAACTGGCTTTCCTTTGTCGAAAACCC
TTTACCTGAGACGGGCGTGAAAGCCTTGCGGTGTTGCTATTTGCAGTGCA
GACGGTGATGGGGAGGAGGATATTAAATGATGCTTTGAGAGCAATAGTGA
ATGCAGAGAGGAGGGGCAAAGCTACTGTTGAGTTGCAGCCAATCTCTACT
GTCATGTCTTCTTTTCTTAATATCATGAAATATCGAGGATACATCAAGGA
TTTTCAGTTGTATGACCCACATAGGGTGGGCAAGATCAAAGTTGAACTAC
TAGGCAGGGTAAATGATTGTCGAGCTCTCACTTATAGGCAGGACGTCAGG
GCAAGGGAAATTGAAGGGTACACGGTGCGTGCTCTTCCAACTAGACAGTG
GGGCTATGTTGTGATAACAACTCCGGATGGTGTTTTGGACCATGAAGAGG
CCCTGAGGCGGAATGTGGGTGGCCAAGTTCTCGGTTATTTTCATTAGACA
TCTTTGCCATCCAAACAATTTGGAAAGGAAGGAAAGAGTTCTTTAACGGA
GTTGCAGCCTGCAAGAATGTGTTAAAACTTTTAAGTAGAGACCATTTCAA
TTTTGTAGTATTTCAGCTGAATGATAGAACAGGAGGTGAAACAACCTCTC
TTCATGAAGTGTTTTGTATCTTCATGGACCAGTTGTGATTTATTGTAATT
TAAAAGTGCAGCATTGTTT
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