DR908116

Overview
NameDR908116
Unique NameDR908116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_SULIM (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.153e-17
Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRARE---IEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL +I N E R      + P S ++ + L +M+  GY+ +F+  D  R GKI V+LLGRVN C  +T R  +  R+   +  Y  R LP+++ G ++++T  GV+ H+EA R  +GG  LGY +
Sbjct:    7 LANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_SULIL (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.153e-17
Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRARE---IEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL +I N E R      + P S ++ + L +M+  GY+ +F+  D  R GKI V+LLGRVN C  +T R  +  R+   +  Y  R LP+++ G ++++T  GV+ H+EA R  +GG  LGY +
Sbjct:    7 LANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_SULIK (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps8p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.153e-17
Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRARE---IEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL +I N E R      + P S ++ + L +M+  GY+ +F+  D  R GKI V+LLGRVN C  +T R  +  R+   +  Y  R LP+++ G ++++T  GV+ H+EA R  +GG  LGY +
Sbjct:    7 LANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_SULIA (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain M.16.27) GN=rps8p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.153e-17
Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRARE---IEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL +I N E R      + P S ++ + L +M+  GY+ +F+  D  R GKI V+LLGRVN C  +T R  +  R+   +  Y  R LP+++ G ++++T  GV+ H+EA R  +GG  LGY +
Sbjct:    7 LANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_DESK1 (30S ribosomal protein S8P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps8p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.153e-17
Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGY---TVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGY 488
            L +AL AI NAE R K  V + P S +  + L +++  GYI +F+  D  R GKIK++LLGR+N    +  R  V+ RE+  +     R LP    G ++++TP GVL H+EA+ +  GG +L Y
Sbjct:    7 LANALSAIYNAEIRAKKEVVVWPASKLTLNVLKVLQREGYIGEFEYIDDGRWGKIKIQLLGRINKIGVIKPRYPVKHRELAEFPEWLKRYLPAYNIGVIIVSTPYGVLSHKEAVEKQTGGVLLAY 131          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METVS (30S ribosomal protein S8P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps8p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 42/124 (33.87%), Postives = 75/124 (60.48%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  + N E  GK    L+P S ++   L +M+ +GYI +F+  +  + G  KV+L+G++N C A+  R  V+ +E E +  R LP + +G ++++TP G++ H+EA    VGG+++ Y +
Sbjct:    7 LANALNHVSNCEGVGKNVAYLKPASKLIGRVLKVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKYQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARTAGVGGRLISYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METVA (30S ribosomal protein S8P OS=Methanococcus vannielii GN=rps8p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 42/124 (33.87%), Postives = 75/124 (60.48%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  + N E  GK    L+P S ++   L +M+ +GYI +F+  +  + G  KV+L+G++N C A+  R  V+ +E E +  R LP + +G ++++TP G++ H+EA    VGG+++ Y +
Sbjct:    7 LANALNHVSNCEGVGKNVAYLKPASKLIGRVLKVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKYQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARTAGVGGRLISYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_CALMQ (30S ribosomal protein S8P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps8p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 46/125 (36.80%), Postives = 75/125 (60.00%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            +L++AL ++ NAE RG   V + P S ++ + L +M+  GY+ +F+     R GK  V+LLGR+ND  A+  R  V+  E++ +  + LP RQ G +++TT  GV+ H EA    VGG ++ Y +
Sbjct:    6 VLSNALMSVKNAESRGDRQVIIWPSSKLIGNVLRVMQRYGYVGEFEYVYDGRGGKYVVQLLGRINDIGAIKPRFHVKVDELQKWEEKYLPARQVGILILTTSKGVVSHLEARENRVGGILVAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_STAMF (30S ribosomal protein S8P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.673e-17
Identity = 48/127 (37.80%), Postives = 75/127 (59.06%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIE---GYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  I NAE R K+   + P S ++ + L +M+  GYI +F+  D  R GKIKV+LLGR+N    +  R  V+ R++E    +  + LP    G ++++TP GVL H+EA+ +  GG +L Y +
Sbjct:    7 LANALATIQNAEMRAKSEALIWPASKLIINVLRVMQREGYIGEFEYIDDGRWGKIKVQLLGRINKTGVIKPRFPVKLRDLERMPHWLRKYLPAYNIGILILSTPHGVLSHKEAIAKKTGGVLLAYVY 133          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_THENV (30S ribosomal protein S8P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps8p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 46/125 (36.80%), Postives = 74/125 (59.20%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            +L++AL  I NAE  GK  V + P++ ++   L +++  GY+ + +  D  R GK  V+LLG++ND   +  R  V+ REI  +  + LP RQ G +VI+T  GV+ H EA  + +GG +L Y +
Sbjct:    6 LLSNALIQIKNAEAMGKRQVAIWPVNKLIYYTLRVLQRHGYVGEVEYIDDGRGGKYVVQLLGKINDIGPIKPRYPVKYREIVQWEQKFLPARQIGILVISTNQGVMSHVEAKEKKIGGVLLAYVY 130          
The following BLAST results are available for this feature:
BLAST of DR908116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_SULIM2.153e-1737.0130S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIL2.153e-1737.0130S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIK2.153e-1737.0130S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIA2.153e-1737.0130S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_DESK12.153e-1739.2030S ribosomal protein S8P OS=Desulfurococcus kamch... [more]
RS8_METVS2.812e-1733.8730S ribosomal protein S8P OS=Methanococcus vanniel... [more]
RS8_METVA2.812e-1733.8730S ribosomal protein S8P OS=Methanococcus vanniel... [more]
RS8_CALMQ2.812e-1736.8030S ribosomal protein S8P OS=Caldivirga maquilinge... [more]
RS8_STAMF3.673e-1737.8030S ribosomal protein S8P OS=Staphylothermus marin... [more]
RS8_THENV4.796e-1736.8030S ribosomal protein S8P OS=Thermoproteus neutrop... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16244 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-35_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908116 ID=DR908116; Name=DR908116; organism=Citrus sinensis; type=EST; length=719bp
GCAATTTGGTTTAAATATCAGAAGAACTGGCTTTCCTTTGTCGAAAACCC
TTTACCTGAGACGGGCGTGAAAGCCTTGCGGTGTTGCTATTTGCAGTGCA
GACGGTGATGGGGAGGAGGATATTAAATGATGCTTTGAGAGCAATAGTGA
ATGCAGAGAGGAGGGGCAAAGCTACTGTTGAGTTGCAGCCAATCTCTACT
GTCATGTCTTCTTTTCTTAATATCATGAAATATCGAGGATACATCAAGGA
TTTTCAGTTGTATGACCCACATAGGGTGGGCAAGATCAAAGTTGAACTAC
TAGGCAGGGTAAATGATTGTCGAGCTCTCACTTATAGGCAGGACGTCAGG
GCAAGGGAAATTGAAGGGTACACGGTGCGTGCTCTTCCAACTAGACAGTG
GGGCTATGTTGTGATAACAACTCCGGATGGTGTTTTGGACCATGAAGAGG
CCCTGAGGCGGAATGTGGGTGGCCAAGTTCTCGGTTATTTTCATTAGACA
TCTTTGCCATCCAAACAATTTGGAAAGGAAGGAAAGAGTTCTTTAACGGA
GTTGCAGCCTGCAAGAATGTGTTAAAACTTTTAAGTAGAGACCATTTCAA
TTTTGTAGTATTTCAGCTGAATGATAGAACAGGAGGTGAAACAACCTCTC
TTCATGAAGTGTTTTGTATCTTCATGGACCAGTTGTGATTTATTGTAATT
TAAAAGTGCAGCATTGTTT
back to top