DR908116

Overview
NameDR908116
Unique NameDR908116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_PYRIL (30S ribosomal protein S8P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps8p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 47/125 (37.60%), Postives = 74/125 (59.20%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            +L++AL  I NAE  GK  V + P++ ++   L +++  GY+ + +  D  R GK  V+LLG++ND   +  R  V+ REI  +  + LP RQ G +VI+T  GV+ H EA  R +GG +L Y +
Sbjct:    6 LLSNALIQIKNAEIMGKKQVVIWPVNKLIYHTLRVLQRYGYVGEIEYIDDGRGGKYVVQLLGKINDIGPIRPRYPVKYREIVQWEQKFLPARQIGILVISTSQGVMSHIEAKERKIGGVLLAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_HALMA (30S ribosomal protein S8P OS=Haloarcula marismortui GN=rps8p PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 46/122 (37.70%), Postives = 66/122 (54.10%), Query Frame = 3
Query:  129 DALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            +AL A+ NAE  G     + P S  + S L +   RGYI  F   D  + G+ +VEL G +N+C  +  R    A E E +  R LP R +G +V+TT  G++ H EA  + VGGQV+ Y +
Sbjct:    9 NALSALNNAESVGHLEQTVSPASNEIGSVLEVFYDRGYIDGFSFVDDGKAGEFEVELKGAINECGPVKPRYSAGADEFEKWEKRFLPARDYGTLVVTTSHGIMSHYEAREQGVGGQVIAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_META3 (30S ribosomal protein S8P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps8p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.264e-17
Identity = 41/124 (33.06%), Postives = 72/124 (58.06%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  + N ER GK    +QP S ++     +M+ +GY+ +F+  +  + G  KVEL G +N C A+  R  V+  E E +  R LP + +G ++++TP G++ H+EA    +GG+++ Y +
Sbjct:    7 LANALNHLSNCERVGKDVAYVQPASKLIGRVFKVMQDKGYMGNFEYIEDGKAGIYKVELTGHINKCGAVRPRYAVKKTEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKSNGLGGRLISYIY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_THEAC (30S ribosomal protein S8P OS=Thermoplasma acidophilum GN=rps8p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 42/124 (33.87%), Postives = 70/124 (56.45%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            LND + +I NA R GK  +  +P + ++   L +M+   YIK F++ D  R GK K+ L   +N+C  +  R  V+   +E Y  R LP   +G +++TT  GV+ + EA +  +GG++L Y +
Sbjct:    6 LNDVINSIKNASRLGKREIIAEPAAKLIGKVLKVMQDYNYIKSFEVIDESRGGKFKIVLNTTINNCGVIKPRFPVKNENLEKYEARYLPAEDFGILILTTTKGVMSNIEARKLGIGGKLLAYVY 129          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_IGNH4 (30S ribosomal protein S8P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps8p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 46/127 (36.22%), Postives = 75/127 (59.06%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRARE---IEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  I N E RG     + P S ++++ L IM+  GY+ +F+  D  R GKI+V LLGR+N C A+  R  V  R+   +  +  R LP++  G ++I+T  G++ H+EA+++ VGG  + Y +
Sbjct:    7 LANALTTIYNNEVRGNKEAIIMPASKLIANVLRIMQKEGYVGEFEYIDDGRWGKIRVRLLGRINKCGAIKPRVSVSYRDLLVLPEHLRRFLPSKDVGILIISTSQGLMTHKEAIQKRVGGIAIAYVY 133          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_SULTO (30S ribosomal protein S8P OS=Sulfolobus tokodaii GN=rps8p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRARE---IEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  I N E R      + P S ++ + L  M+  GYI +F+  D  R GKI V+LLGR+N C  +  R  ++ ++   +  Y  R LP+++ G ++I+T  GV+ H++A+R  +GG  LGY +
Sbjct:    7 LANALTTIYNNEMRRNKQAIIMPASKLIINVLRAMQKEGYIGEFEFIDDGRSGKIVVQLLGRINKCGPIAPRYPLKYKDLLTLPDYVRRYLPSKEIGVLIISTNKGVMTHKDAIRERIGGVALGYVY 133          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_SULAC (30S ribosomal protein S8P OS=Sulfolobus acidocaldarius GN=rps8p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 44/127 (34.65%), Postives = 71/127 (55.91%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAR---EIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  + N E R      + P S ++ S L +M+  GYI +F+  D  R GKI V+LLGR+N C  ++ R  +       +  Y  + LP+++ G ++I+TP GV+ H + +R  +GG  LGY +
Sbjct:    7 LANALATLYNNEMRRNKQALITPASKLIISVLRVMQKEGYIGEFEYIDDGRAGKIIVQLLGRINKCGPISPRYPLDYNGLLRLPDYIRKYLPSKEIGIIIISTPKGVMSHRDGIREKIGGVTLGYVY 133          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_PYRAR (30S ribosomal protein S8P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps8p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 47/125 (37.60%), Postives = 73/125 (58.40%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            IL++AL  I NAE  GK  V + P++ +    L +++  GY+ + +  D  R GK  V+LLG++ND   +  R  V+ REI  +  + LP RQ G +VI+T  GV+ H EA  + +GG +L Y +
Sbjct:    6 ILSNALIQIKNAEVMGKRQVTIWPVNKLTYYTLRVLQRYGYVGEIEYVDDGRGGKYIVQLLGKINDIGPIRPRYPVKYREIVQWEQKFLPARQIGILVISTSQGVVSHIEAKEKKIGGVLLAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METAC (30S ribosomal protein S8P OS=Methanosarcina acetivorans GN=rps8p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 44/124 (35.48%), Postives = 70/124 (56.45%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  I NAE  GK++  ++P S  + + L +M+  GYI DF+  D  + G   V L+GR+N C A+  R  V     E +  + LP + +G +++TT  GV+   EA  + +GGQ+L Y +
Sbjct:    7 LANALSTIKNAEAIGKSSCVVRPASKNIGNVLKVMQDLGYIGDFEFIDDGKAGIYSVTLVGRINKCGAIKPRYSVGTASFERWEKQFLPAKNFGALIVTTSSGVMSQYEARDKKIGGQLLAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_THEVO (30S ribosomal protein S8P OS=Thermoplasma volcanium GN=rps8p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16
Identity = 41/124 (33.06%), Postives = 70/124 (56.45%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            LND + +I NA R G+  +  +P + ++   L +M+   YIK F++ D  R GK K+ L   +N+C  +  R  V+   +E Y  R LP   +G +++TT  GV+ + EA +  +GG++L Y +
Sbjct:    6 LNDVINSIKNASRLGRREIIAEPAAKLIGKVLKVMQDYNYIKSFEVIDESRGGKFKIVLNTTINNCGVIKPRFPVKNENLEKYESRYLPAEDFGILILTTTKGVMSNIEARKLGIGGKLLAYVY 129          
The following BLAST results are available for this feature:
BLAST of DR908116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_PYRIL4.796e-1737.6030S ribosomal protein S8P OS=Pyrobaculum islandicu... [more]
RS8_HALMA4.796e-1737.7030S ribosomal protein S8P OS=Haloarcula marismortu... [more]
RS8_META36.264e-1733.0630S ribosomal protein S8P OS=Methanococcus aeolicu... [more]
RS8_THEAC8.182e-1733.8730S ribosomal protein S8P OS=Thermoplasma acidophi... [more]
RS8_IGNH48.182e-1736.2230S ribosomal protein S8P OS=Ignicoccus hospitalis... [more]
RS8_SULTO1.823e-1635.4330S ribosomal protein S8P OS=Sulfolobus tokodaii G... [more]
RS8_SULAC1.823e-1634.6530S ribosomal protein S8P OS=Sulfolobus acidocalda... [more]
RS8_PYRAR1.823e-1637.6030S ribosomal protein S8P OS=Pyrobaculum arsenatic... [more]
RS8_METAC2.380e-1635.4830S ribosomal protein S8P OS=Methanosarcina acetiv... [more]
RS8_THEVO3.109e-1633.0630S ribosomal protein S8P OS=Thermoplasma volcaniu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16244 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-35_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908116 ID=DR908116; Name=DR908116; organism=Citrus sinensis; type=EST; length=719bp
GCAATTTGGTTTAAATATCAGAAGAACTGGCTTTCCTTTGTCGAAAACCC
TTTACCTGAGACGGGCGTGAAAGCCTTGCGGTGTTGCTATTTGCAGTGCA
GACGGTGATGGGGAGGAGGATATTAAATGATGCTTTGAGAGCAATAGTGA
ATGCAGAGAGGAGGGGCAAAGCTACTGTTGAGTTGCAGCCAATCTCTACT
GTCATGTCTTCTTTTCTTAATATCATGAAATATCGAGGATACATCAAGGA
TTTTCAGTTGTATGACCCACATAGGGTGGGCAAGATCAAAGTTGAACTAC
TAGGCAGGGTAAATGATTGTCGAGCTCTCACTTATAGGCAGGACGTCAGG
GCAAGGGAAATTGAAGGGTACACGGTGCGTGCTCTTCCAACTAGACAGTG
GGGCTATGTTGTGATAACAACTCCGGATGGTGTTTTGGACCATGAAGAGG
CCCTGAGGCGGAATGTGGGTGGCCAAGTTCTCGGTTATTTTCATTAGACA
TCTTTGCCATCCAAACAATTTGGAAAGGAAGGAAAGAGTTCTTTAACGGA
GTTGCAGCCTGCAAGAATGTGTTAAAACTTTTAAGTAGAGACCATTTCAA
TTTTGTAGTATTTCAGCTGAATGATAGAACAGGAGGTGAAACAACCTCTC
TTCATGAAGTGTTTTGTATCTTCATGGACCAGTTGTGATTTATTGTAATT
TAAAAGTGCAGCATTGTTT
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