DR908116

Overview
NameDR908116
Unique NameDR908116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METBF (30S ribosomal protein S8P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps8p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  I NAE  GK++  ++P S  + + L +M+  GYI +F+  D  + G   V L+GRVN C A+  R  V     E +  + LP + +G ++ITT  GV+   EA  + +GGQ+L Y +
Sbjct:    7 LANALSTIKNAEAIGKSSCIIRPASKNIGNVLKVMQDLGYIGEFEFIDDGKAGIYSVTLVGRVNKCGAIKPRYSVGTGSFERWEKQFLPAKNFGALIITTSSGVMSQYEAREKKIGGQLLAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METMA (30S ribosomal protein S8P OS=Methanosarcina mazei GN=rps8p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16
Identity = 44/124 (35.48%), Postives = 70/124 (56.45%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            L +AL  I NAE  GK++  ++P S  + + L +M+  GYI DF+  D  + G   V L+GR+N C A+  R  V     E +  + LP + +G +++TT  GV+   EA  + +GGQ+L Y +
Sbjct:    7 LANALSTIKNAEAIGKSSCIVRPASKNIGNVLKVMQDLGYIGDFEFIDDGKAGIYSVTLVGRINKCGAIKPRYSVGTGSFERWEKQFLPAKNFGALILTTSSGVMSQYEARDKKIGGQLLAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_METHJ (30S ribosomal protein S8P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps8p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16
Identity = 43/122 (35.25%), Postives = 69/122 (56.56%), Query Frame = 3
Query:  129 DALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            DA+  + NA   G+A   +QP   ++   L IMK  GYIK++   +  R G+ KV + G +N C  ++ R  V   E+E +    LP++  G ++I+T  GV+ H +A R  VGG++LGY +
Sbjct:    9 DAMSTLKNASDTGRAECIVQPAGRLIGELLRIMKEAGYIKEYTRIEDGRGGQFKVVMSGLINKCGCISPRYSVSLDEMEYWEQLYLPSKNIGMLMISTSKGVMGHHDARRNGVGGELLGYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_PYRAE (30S ribosomal protein S8P OS=Pyrobaculum aerophilum GN=rps8p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 45/125 (36.00%), Postives = 72/125 (57.60%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            IL++AL  I NAE  GK    + P++ +    L +++  GY+ + +  D  + GK  V+LLG++ND   +  R  V+ REI  +  + LP RQ G ++I+T  GV+ H EA  R +GG +L Y +
Sbjct:    6 ILSNALIQIKNAEIVGKKQAVIWPVNKLTYYTLRVLQRYGYVGEIEYIDDGKGGKYIVQLLGKINDIGPIRPRYPVKYREIVQWEQKFLPARQIGILIISTSQGVMSHIEAKERKIGGVLLAYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_NANEQ (30S ribosomal protein S8P OS=Nanoarchaeum equitans GN=rps8p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 41/129 (31.78%), Postives = 70/129 (54.26%), Query Frame = 3
Query:  108 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            M R I+ D L  + N  R+G+      P+S ++   + IMK  GYIK+++L D  R   I++EL    N+  A+  R  V   E+E Y  R LP   +G ++++T  G++ + EA  + +GG ++ Y +
Sbjct:    1 MARDIVADFLSHLTNVRRKGEDKTAFFPVSNLIIKLVEIMKREGYIKNYRLVDSSRGKIIEIELSEYFNEANAIKPRFPVEYSELEKYEKRYLPALNFGRLILSTSKGLITNREAKEQKIGGVLIAYVY 129          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_NITMS (30S ribosomal protein S8P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.463e-13
Identity = 39/125 (31.20%), Postives = 66/125 (52.80%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            IL +    + N E R K    + P S +    L  ++  GYI +F+  D  R GK K++LL ++  C A++ R  V+  E   +  + LP    G +++TT  GV+ H EA ++ +GG ++GY +
Sbjct:    6 ILANLFVTLYNNETRRKGECTILPTSKLGIEVLKTLQKDGYIGEFEHIDDKRGGKFKIKLLAKITKCGAISPRFKVKTDEFNNWEQQYLPAYDRGMLLVTTNQGVMSHHEATQKGIGGFLIGYVY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_KORCO (30S ribosomal protein S8P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps8p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 39/122 (31.97%), Postives = 60/122 (49.18%), Query Frame = 3
Query:  123 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGY 488
            L DA+  + N    GK  V +   S ++   L ++K  GYI +F+  D  R GK  V L GR+N    +  R  V+  E   +    LP    G ++++T  GV+ H EA  R +GG ++ Y
Sbjct:    7 LADAMSTLTNGSMLGKREVVINIASKLIGKVLKVLKEHGYIDEFEYVDDGRFGKYVVRLNGRINKAGVIKPRFPVKVGEFSRWEKIYLPAENVGLIIVSTNQGVMTHREAKERGIGGVLIAY 128          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS8_CENSY (30S ribosomal protein S8P OS=Cenarchaeum symbiosum GN=rps8p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 40/125 (32.00%), Postives = 65/125 (52.00%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            IL +    + N E R +   ++ P S +    L  +K  GYI +F+  +  R GK  V LL ++  C A++ R  V+  E   +  + LP+   G +V+TT  GV+ H EA  R +GG ++GY +
Sbjct:    6 ILANLFVTLYNTEARRRGDCQVYPTSKLGVEVLGTLKKAGYIGEFEHVEDSRGGKFSVHLLAKITKCGAISPRFKVKKGEYTFWEQQYLPSYDRGMLVVTTNQGVMSHHEAAERGIGGFLIGYVY 130          
The following BLAST results are available for this feature:
BLAST of DR908116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_METBF3.109e-1636.2930S ribosomal protein S8P OS=Methanosarcina barker... [more]
RS8_METMA5.303e-1635.4830S ribosomal protein S8P OS=Methanosarcina mazei ... [more]
RS8_METHJ5.303e-1635.2530S ribosomal protein S8P OS=Methanospirillum hung... [more]
RS8_PYRAE1.181e-1536.0030S ribosomal protein S8P OS=Pyrobaculum aerophilu... [more]
RS8_NANEQ2.910e-1431.7830S ribosomal protein S8P OS=Nanoarchaeum equitans... [more]
RS8_NITMS2.463e-1331.2030S ribosomal protein S8P OS=Nitrosopumilus mariti... [more]
RS8_KORCO3.217e-1331.9730S ribosomal protein S8P OS=Korarchaeum cryptofil... [more]
RS8_CENSY4.202e-1332.0030S ribosomal protein S8P OS=Cenarchaeum symbiosum... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16244 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-35_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908116 ID=DR908116; Name=DR908116; organism=Citrus sinensis; type=EST; length=719bp
GCAATTTGGTTTAAATATCAGAAGAACTGGCTTTCCTTTGTCGAAAACCC
TTTACCTGAGACGGGCGTGAAAGCCTTGCGGTGTTGCTATTTGCAGTGCA
GACGGTGATGGGGAGGAGGATATTAAATGATGCTTTGAGAGCAATAGTGA
ATGCAGAGAGGAGGGGCAAAGCTACTGTTGAGTTGCAGCCAATCTCTACT
GTCATGTCTTCTTTTCTTAATATCATGAAATATCGAGGATACATCAAGGA
TTTTCAGTTGTATGACCCACATAGGGTGGGCAAGATCAAAGTTGAACTAC
TAGGCAGGGTAAATGATTGTCGAGCTCTCACTTATAGGCAGGACGTCAGG
GCAAGGGAAATTGAAGGGTACACGGTGCGTGCTCTTCCAACTAGACAGTG
GGGCTATGTTGTGATAACAACTCCGGATGGTGTTTTGGACCATGAAGAGG
CCCTGAGGCGGAATGTGGGTGGCCAAGTTCTCGGTTATTTTCATTAGACA
TCTTTGCCATCCAAACAATTTGGAAAGGAAGGAAAGAGTTCTTTAACGGA
GTTGCAGCCTGCAAGAATGTGTTAAAACTTTTAAGTAGAGACCATTTCAA
TTTTGTAGTATTTCAGCTGAATGATAGAACAGGAGGTGAAACAACCTCTC
TTCATGAAGTGTTTTGTATCTTCATGGACCAGTTGTGATTTATTGTAATT
TAAAAGTGCAGCATTGTTT
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