DR908105

Overview
NameDR908105
Unique NameDR908105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_STRMU (Superoxide dismutase [Mn/Fe] OS=Streptococcus mutans GN=sodA PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.496e-34
Identity = 81/197 (41.12%), Postives = 114/197 (57.87%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT--STVVQLQGAIKF----NGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 573
            LPY Y ALEP I  E M LHH KHH  YV N N A+E+  +    ++   + V Q+   I+     NGGGH+NH++FW+ L+P          + +  AI+  FGS +      +A      GSGW WL +D E K L V +TANQD  +++   L P+L +DVWEHAYYL Y+NV+P+Y+K  + V+NW   + +Y
Sbjct:    8 LPYAYDALEPYIDAETMTLHHDKHHATYVANANAALEKHPEIGENLEVLLADVEQIPADIRQSLINNGGGHLNHALFWELLSPEKT----KVTAEVAAAINEAFGSFDDFKAAFTAAATTRFGSGWAWLVVDKEGK-LEVTSTANQDTPISQG--LKPILALDVWEHAYYLNYRNVRPNYIKAFFEVINWNTVARLY 197          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODF_METTH (Superoxide dismutase [Fe] OS=Methanobacterium thermoautotrophicum GN=sod PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.496e-34
Identity = 79/188 (42.02%), Postives = 107/188 (56.91%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIK---FNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWK 555
            LPY Y ALEP IS E + +HHQKHHQAYV   N  + +L +A    ++ T V ++ A+K   F+ GG+V H  FW N+ P  E GGEP    L   I+  FGS E   ++ S    + +GSGW  L       RL +      +  V   P    LL +DVWEHAYY+ Y+NV+PDY++  WN++NWK
Sbjct:   14 LPYPYDALEPHISREQLTIHHQKHHQAYVDGANALLRKLDEAR---ESDTDVDIKAALKELSFHVGGYVLHLFFWGNMGPADECGGEPS-GKLAEYIEKDFGSFERFRKEFSQAAISAEGSGWAVLTYCQRTDRLFIMQVEKHN--VNVIPHFRILLVLDVWEHAYYIDYRNVRPDYVEAFWNIVNWK 195          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_PIG (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Sus scrofa GN=SOD2 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.333e-34
Identity = 78/147 (53.06%), Postives = 94/147 (63.95%), Query Frame = 1
Query:   34 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDV 474
            I+ +IMQLHH +HH AYV N N   E+  +AL K D +  V LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS E   +K++A    +QGSGW WLG + E  RL +   +NQDPL      LVPLLGIDV
Sbjct:    2 INAQIMQLHHSEHHAAYVNNLNVVEEKYQEALKKGDVTAQVALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACSNQDPL-QGTTGLVPLLGIDV 144          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODF_PYRAE (Superoxide dismutase [Fe] OS=Pyrobaculum aerophilum GN=sod PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.353e-34
Identity = 77/184 (41.85%), Postives = 106/184 (57.61%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 552
            LPY Y+ALEP IS EIMQLHHQKHHQ YV   N A+E+L +         +  +   + F+  GH+ HSIFW N+AP  +GGG+ P   +   I+  FGS E   ++ S     ++G GW  L  +   ++L++      +  +  A     LL +DVWEHAYYLQYKN +  Y+ N WNV+NW
Sbjct:   12 LPYAYNALEPYISAEIMQLHHQKHHQGYVNGANAALEKLEKFRKGEAQIDIRAVLRDLSFHLNGHILHSIFWPNMAPPGKGGGK-PGGKIADLINKFFGSFEKFKEEFSQAAKNVEGVGWAILVYEPLEEQLLILQIEKHN--LMHAADAQVLLALDVWEHAYYLQYKNDRGSYVDNWWNVVNW 192          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_MYCKA (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium kansasii GN=sodA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.685e-34
Identity = 75/167 (44.91%), Postives = 99/167 (59.28%), Query Frame = 1
Query:   55 LHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 552
            LHH KHH  YV   N AV +L +A  K D S ++  +  + FN  GHVNH+I+WKNL+P    GG+ P   L  AID  FGS +    +  A    +QGSGW  LG DT   +L++    +     T  P  ++PLL +D+WEHA+YLQYKNVK D+ K  WNV+NW
Sbjct:    1 LHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIDEAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIIPLLLLDMWEHAFYLQYKNVKVDFAKAFWNVVNW 161          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM2_BACAN (Superoxide dismutase [Mn] 2 OS=Bacillus anthracis GN=sodA2 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.425e-34
Identity = 78/198 (39.39%), Postives = 113/198 (57.07%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 573
            L YDY  LEP I    + +HH KHH  YV N N A+E   +  NK     +  L+        A++ NGGGH  HS+FW+ ++P   GGGEP +  +   ID +F + + L  ++S    +  GSG+ WL LD E   L V +T NQD  + +    +PLL IDVWEHAYYL+Y+N +P+++ N W+ +NW   ++ Y
Sbjct:    9 LSYDYDELEPYIDSNTLSIHHGKHHATYVNNLNAALENYSELHNKSLEELLCNLETLPKEIVTAVRNNGGGHYCHSLFWEVMSP--RGGGEP-NGDVAKVIDYYFNTFDNLKDQLSKAAISRFGSGYGWLVLDGE--ELSVMSTPNQDTPLQEGK--IPLLVIDVWEHAYYLKYQNRRPEFVTNWWHTVNWDRVNEKY 199          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM2_BACCR (Superoxide dismutase [Mn] 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA2 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.821e-33
Identity = 77/198 (38.89%), Postives = 111/198 (56.06%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 573
            L YDY  LEP I    + +HH KHH  YV N N  +E   +  NK     +  L         A++ NGGGH  HS+FW+ ++P   GGGEP +  +   ID +F + + L  ++S    +  GSG+ WL LD E   L V +T NQD  + +    +PLL IDVWEHAYYL+Y+N +P+++ N W+ +NW   ++ Y
Sbjct:    9 LSYDYDELEPHIDSNTLSIHHGKHHATYVNNLNATLENYTELHNKSLEELLCNLDTLPKEIVTAVRNNGGGHYCHSLFWEVMSP--RGGGEP-NGDVAKVIDYYFNTFDNLKDQLSKAAISRFGSGYGWLVLDGE--ELSVMSTPNQDTPLQEGK--IPLLVIDVWEHAYYLKYQNRRPEFVTNWWHTVNWDQVNEKY 199          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODF_METTM (Superoxide dismutase [Fe] OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=sod PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.685e-33
Identity = 72/185 (38.92%), Postives = 101/185 (54.59%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWK 555
            LPY Y ALEP IS E +++HH+KHHQAYV   N  + +L  A    +   +      + F+ GG+V H  FW N+ P  E GGE P   L   I+  FGS +   ++ S    + +GSGW  L       RL +      +  V   P    L+ +DVWEHAYY+ Y+NV+PDY++  WN++NWK
Sbjct:   11 LPYPYDALEPYISEEQLRIHHEKHHQAYVDGANGVLRKLDDARENGEEVDIKAALKELSFHVGGYVLHLFFWGNMGPADECGGE-PDGRLAEYIEKDFGSFQRFKKEFSQAAVSAEGSGWAVLTYCQRTDRLFIMQVEKHN--VNVIPHFRILMVLDVWEHAYYIDYRNVRPDYVEAFWNIVNWK 192          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODF_PORGI (Superoxide dismutase [Mn/Fe] OS=Porphyromonas gingivalis GN=sodB PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.812e-33
Identity = 79/192 (41.15%), Postives = 105/192 (54.69%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 573
            LPY   AL P IS E ++ HH KH + YV N NK +  +       D +T+VQ  +G I  N G  +NH++++    P   G G  P   LG AID  FGS E   ++ +  G  L GSGWVWL  D   K L +E   N    V K   L PLLG DVWEHAYYL Y+N + D+LK++W++++W      Y
Sbjct:    8 LPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLI--IGTEFENADLNTIVQKSEGGIFNNAGQTLNHNLYFTQFRP---GKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWVWLASDANGK-LSIEKEPNAGNPVRKG--LNPLLGFDVWEHAYYLTYQNRRADHLKDLWSIVDWDIVESRY 191          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODF_BACSU (Probable superoxide dismutase [Fe] OS=Bacillus subtilis GN=sodF PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.812e-33
Identity = 78/199 (39.20%), Postives = 110/199 (55.28%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKECP*AW 597
            LPY YSALEP IS +IM LHH KHHQ+YV   NKA  +L +A    +   +   +  + F+G GH  HSIFW ++   H  G   P  +L   ID  FGS  A  +  +     ++G GW  L       RL +  TA +  L ++   ++PLL +DVWEHAYYLQYKN +  Y+ + WNV++W+ A   +++     W
Sbjct:   85 LPYKYSALEPYISRDIMILHHTKHHQSYVDGLNKAESELKKARATKNYDLITHWERELAFHGAGHYLHSIFWFSM---HPNGKRRPTGALFQMIDLSFGSYSAFKEHFTQASKKVEGVGWAILVWAPRSGRLEI-LTAEKHQLFSQW-DVIPLLPLDVWEHAYYLQYKNDRASYVDHWWNVVDWREAEKRFEQAKEVVW 278          
The following BLAST results are available for this feature:
BLAST of DR908105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_STRMU1.496e-3441.12Superoxide dismutase [Mn/Fe] OS=Streptococcus muta... [more]
SODF_METTH1.496e-3442.02Superoxide dismutase [Fe] OS=Methanobacterium ther... [more]
SODM_PIG3.333e-3453.06Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODF_PYRAE4.353e-3441.85Superoxide dismutase [Fe] OS=Pyrobaculum aerophilu... [more]
SODM_MYCKA5.685e-3444.91Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODM2_BACAN7.425e-3439.39Superoxide dismutase [Mn] 2 OS=Bacillus anthracis ... [more]
SODM2_BACCR2.821e-3338.89Superoxide dismutase [Mn] 2 OS=Bacillus cereus (st... [more]
SODF_METTM3.685e-3338.92Superoxide dismutase [Fe] OS=Methanobacterium ther... [more]
SODF_PORGI4.812e-3341.15Superoxide dismutase [Mn/Fe] OS=Porphyromonas ging... [more]
SODF_BACSU4.812e-3339.20Probable superoxide dismutase [Fe] OS=Bacillus sub... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16233 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908105 ID=DR908105; Name=DR908105; organism=Citrus sinensis; type=EST; length=722bp
CTTCCGTACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTAT
GCAGCTTCATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACA
AGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATACGTCCACC
GTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAA
CCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCG
AGCCACCACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCT
CTGGAAGCATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGG
CTCTGGATGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGG
TTGAAACTACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTG
GTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGCATACTACCTACAGTA
CAAGAATGTCAAACCAGATTATCTGAAAAACATTTGGAACGTAATGAACT
GGAAGTATGCTAGTGATGTGTATCAGAAAGAATGCCCTTAAGCTTGGAGC
TCTTCCTTGAGCATGGAGTTCTTCGTTTGATCTGGGTTCTCTCTTGGGTT
CAAGAGACGAATATCCTTGCAGCTTTTCACGCTGAAGTGACATAAAACGA
TATTTTGCAGATGATGACAGAC
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