DR908105

Overview
NameDR908105
Unique NameDR908105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODF_ECO57 (Superoxide dismutase [Fe] OS=Escherichia coli O157:H7 GN=sodB PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 7.191e-29
Identity = 70/189 (37.04%), Postives = 99/189 (52.38%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 564
            LPY   AL P IS E ++ H+ KHHQ YVTN N  ++    A        +++      FN    V NH+ +W  LAP    GGEP    +  AI   FGS      + +       GSGW WL  +++ K  +V T+    PL T A    PLL +DVWEHAYY+ Y+N +P YL++ W ++NW++ +
Sbjct:    8 LPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGT--AFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAP--NAGGEPT-GKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVA 188          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_BUCBP (Superoxide dismutase [Mn] OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=sodA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.733e-28
Identity = 72/202 (35.64%), Postives = 106/202 (52.48%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA----------VEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTK---APTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 564
            LPY Y++LEP    + M +HH +HHQAY+ N N            +E+L   LN +     + LQ     N GGH+NHS+FWK L                  ++ +F S++   ++      +  GSGW+WL +      L + TT NQ+ PL+ K     + +P+LG+D+WEHAYYL+YKN + DY+   WNV+NW   S
Sbjct:    8 LPYSYNSLEPFFDEKTMIIHHTRHHQAYINNTNSILNGTHYENLLIEELISKLNILSIENKLALQN----NAGGHINHSLFWKWLKL-----NTILKDDFKIILEKNFKSVDFFKKQFEKIALSHFGSGWIWL-IKKYDNTLRIVTTVNQNTPLMGKEISGISGIPILGLDLWEHAYYLKYKNNRSDYVNAFWNVVNWDEVS 199          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_BORBU (Superoxide dismutase [Fe] OS=Borrelia burgdorferi GN=sod PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.733e-28
Identity = 68/201 (33.83%), Postives = 106/201 (52.74%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV--------QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 579
            L YDY A+EP I  + M++HH KHH  +V N N  +E++ + ++  D S ++        + Q  I+ N GG+ NH+++++ L P   G  +         I+  FGSL+ L   +      + GSGW WL L  E    V+       PL+    +  P+LGIDVWEHAYYL+Y+N + +Y+      +NW+  S VY +
Sbjct:    7 LGYDYDAVEPYIDAKTMEIHHSKHHNGFVMNLNSILEKMGK-IHLTDVSNILKNIHDFPEEFQTLIRNNAGGYSNHTLYFRTLRP---GNKDNLFEKFKDDINAAFGSLDVLKANLKDTAMKIFGSGWAWLVLCPESGLKVISMPNQDSPLMN---SYKPILGIDVWEHAYYLKYQNRRIEYVDAFLKALNWEEVSKVYNE 200          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODF_PSEAE (Superoxide dismutase [Fe] OS=Pseudomonas aeruginosa GN=sodB PE=3 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 2.733e-28
Identity = 69/188 (36.70%), Postives = 98/188 (52.13%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 564
            LPY+ +ALEP IS E ++ HH KHH  YV N N  +    +   K     V    G I  N     NH+ +W  L+P   GGG+P   +L  AI+  FGS +   ++ +       GSGW WL    +    +  T    +PL T   T  PLL  DVWEHAYY+ Y+N++P Y++  WN++NW + +
Sbjct:    8 LPYEKNALEPHISAETLEYHHDKHHNTYVVNLNNLIPGT-EFEGKSLEEIVKSSSGGIFNNAAQVWNHTFYWNCLSP--NGGGQPT-GALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKKADGSLALASTIGAGNPL-TSGDT--PLLTCDVWEHAYYIDYRNLRPKYVEAFWNLVNWDFVA 188          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODF_PSEPK (Superoxide dismutase [Fe] OS=Pseudomonas putida (strain KT2440) GN=sodB PE=3 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 4.661e-28
Identity = 69/192 (35.94%), Postives = 99/192 (51.56%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 576
            LPY + AL+P IS E ++ HH KHH  YV N N  V    +   K     V    G I  N     NH+ +W  L+P   GGG+P   +L  AI+  FGS +   ++ +       GSGW WL    +    +  T     PL T   T  PLL  DVWEHAYY+ Y+N++P Y++  WN++NW + ++ ++
Sbjct:    8 LPYAHDALQPHISKETLEYHHDKHHNTYVVNLNNLVPGT-EFEGKTLEEIVKSSSGGIFNNAAQVWNHTFYWNCLSP--NGGGQPT-GALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKKADGSLALASTIGAGCPL-TSGDT--PLLTCDVWEHAYYIDYRNLRPKYVEAFWNLVNWAFVAEQFE 192          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODF_BACFR (Superoxide dismutase [Fe] OS=Bacteroides fragilis GN=sodB PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.088e-28
Identity = 70/193 (36.27%), Postives = 99/193 (51.30%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 579
            LPY  +ALEP IS + +  H+ KH Q YV N N  V         V+        GAI  N G  +NH++++   AP  +     P   LG AI   FGS E   ++ +A    L GSGW WL +D + K  + +     +P+      L PLLG DVWEHAYYL Y+N + D++  +W +++W    DV +K
Sbjct:    8 LPYANNALEPVISQQTIDYHYGKHLQTYVNNLNSLVPGTEYEGKTVEAIVASAPDGAIFNNAGQVLNHTLYFLQFAP--KPAKNEPAGKLGEAIKRDFGSFENFKKEFNAASVGLFGSGWAWLSVDKDGKLHITKEPNGSNPV---RAGLKPLLGFDVWEHAYYLDYQNRRADHVNKLWEIIDW----DVVEK 191          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODF_PSEPU (Superoxide dismutase [Fe] OS=Pseudomonas putida GN=sodB PE=1 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.038e-27
Identity = 69/192 (35.94%), Postives = 98/192 (51.04%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 576
            LPY + AL+P IS E ++ HH KHH  YV N N  V    +   K     V    G I  N     NH+ +W  LAP    GG+P   +L  AI+  FGS +   ++ +       GSGW WL    +    +  T     PL T   T  PLL  DVWEHAYY+ Y+N++P Y++  WN++NW + ++ ++
Sbjct:    8 LPYAHDALQPHISKETLEFHHDKHHNTYVVNLNNLVPGT-EFEGKTLEEIVKTSSGGIFNNAAQVWNHTFYWNCLAP--NAGGQPT-GALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKKADGSLALASTIGAGCPL-TSGDT--PLLTCDVWEHAYYIDYRNLRPKYVEAFWNLVNWAFVAEQFE 192          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODF_RICFE (Superoxide dismutase [Mn/Fe] OS=Rickettsia felis GN=sodB PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.946e-27
Identity = 72/195 (36.92%), Postives = 99/195 (50.77%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV----QLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLK-NIWNVMNWKYASD 567
            LPYD  + +P  + E    HH KHH AYV N N  ++   + L K D   ++    Q   A  FN    + NHS FW ++ P  +GGG+P    L   I+  FGS E   ++   E     GSGW WL       RL +  TAN    +     + PLL  DVWEHAYY+ Y+N +PDY+   I +++NWK+  D
Sbjct:   19 LPYDKESFKPHFTPETFDYHHGKHHNAYVQNLNNLLKDK-EELQKKDLEEIIEWSSQNSNAAIFNNAAQIWNHSFFWHSIKP--QGGGKPSGKILE-QINKDFGSFEGFCEQFKQEAVGQFGSGWAWLVYHDN--RLQIIKTANAGTPIANG--MKPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWKFVED 205          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_HALMA (Superoxide dismutase [Mn] OS=Haloarcula marismortui GN=sod PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.148e-26
Identity = 70/193 (36.27%), Postives = 95/193 (49.22%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 579
            LPYDY ALEP IS +++  HH  HHQ YV     A E L +  +  D  +     G +  NG GH  H++FW+N+ P   GGGEP    L   I+  FGS E    K   E AA    GW  L  D   K+L        D          P+L +DVWEH+YY  Y   + D++   + V++W  A++ Y+K
Sbjct:   12 LPYDYDALEPHISEQVLTWHHDTHHQGYVNGLESAEETLAENRDAGDFGSSAAAMGNVTHNGCGHYLHTLFWENMDP--NGGGEPEGELLD-RIEEDFGSYEG--WKGEFEAAASAAGGWALLVYDPVAKQLRNVPVDKHDQGALWGSH--PILALDVWEHSYYYDYGPARGDFIDAFFEVVDWDKAAEEYEK 197          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODF_ANASP (Superoxide dismutase [Fe] OS=Anabaena sp. (strain PCC 7120) GN=sodB PE=3 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.499e-26
Identity = 73/199 (36.68%), Postives = 106/199 (53.27%), Query Frame = 1
Query:    1 LPYDYSALEP-AISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIK---FNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-IWNVMNWKYASDVYQK 579
            LPYD++ALE   + GE  + H+ KHH+AYV N NK  +    A   ++    +  + A K   FN    V NH+ FW +L P    GG  P       I+  FGS + L ++ S   A   GSGW WL +D      V +T   ++PL   A     LL +DVWEHAYY+ ++N +P ++KN + N++NW +A+  Y K
Sbjct:    8 LPYDFNALEQYGMKGETFEYHYGKHHKAYVDNLNKLTDGTELADKSLEEVIQIAFKDASKAGIFNNAAQVWNHTFFWNSLKPA---GGGAPTGEFAAKINQDFGSFDKLKEEFSNAAATQFGSGWAWL-IDDGGTLKVTKTPNAENPL---AHGQKALLTLDVWEHAYYIDFRNARPAFIKNYLDNLVNWDFAAANYAK 199          
The following BLAST results are available for this feature:
BLAST of DR908105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODF_ECO577.191e-2937.04Superoxide dismutase [Fe] OS=Escherichia coli O157... [more]
SODM_BUCBP2.733e-2835.64Superoxide dismutase [Mn] OS=Buchnera aphidicola s... [more]
SODM_BORBU2.733e-2833.83Superoxide dismutase [Fe] OS=Borrelia burgdorferi ... [more]
SODF_PSEAE2.733e-2836.70Superoxide dismutase [Fe] OS=Pseudomonas aeruginos... [more]
SODF_PSEPK4.661e-2835.94Superoxide dismutase [Fe] OS=Pseudomonas putida (s... [more]
SODF_BACFR6.088e-2836.27Superoxide dismutase [Fe] OS=Bacteroides fragilis ... [more]
SODF_PSEPU1.038e-2735.94Superoxide dismutase [Fe] OS=Pseudomonas putida GN... [more]
SODF_RICFE3.946e-2736.92Superoxide dismutase [Mn/Fe] OS=Rickettsia felis G... [more]
SODM_HALMA1.148e-2636.27Superoxide dismutase [Mn] OS=Haloarcula marismortu... [more]
SODF_ANASP1.499e-2636.68Superoxide dismutase [Fe] OS=Anabaena sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16233 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908105 ID=DR908105; Name=DR908105; organism=Citrus sinensis; type=EST; length=722bp
CTTCCGTACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTAT
GCAGCTTCATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACA
AGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATACGTCCACC
GTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAA
CCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCG
AGCCACCACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCT
CTGGAAGCATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGG
CTCTGGATGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGG
TTGAAACTACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTG
GTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGCATACTACCTACAGTA
CAAGAATGTCAAACCAGATTATCTGAAAAACATTTGGAACGTAATGAACT
GGAAGTATGCTAGTGATGTGTATCAGAAAGAATGCCCTTAAGCTTGGAGC
TCTTCCTTGAGCATGGAGTTCTTCGTTTGATCTGGGTTCTCTCTTGGGTT
CAAGAGACGAATATCCTTGCAGCTTTTCACGCTGAAGTGACATAAAACGA
TATTTTGCAGATGATGACAGAC
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