DR908105

Overview
NameDR908105
Unique NameDR908105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODF_RICPR (Superoxide dismutase [Mn/Fe] OS=Rickettsia prowazekii GN=sodB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.552e-23
Identity = 64/195 (32.82%), Postives = 98/195 (50.26%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-----AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLK-NIWNVMNWKYASD 567
            LPYD  + +P  + E    HH KHH +YV N N  ++   + L K D   +++        AI  N     NH+ FW ++ P   GGG+P    +   I   FGS E    +   E     GSGW W+ +  + K  +++T+    P+V     + P+L  DVWEHAYY+ Y+N + DY+   I +++NWK+  D
Sbjct:   19 LPYDKESFKPHFTRETFDYHHGKHHNSYVQNLNNLIKDR-EELQKKDLEEIIEWSSQNAEVAILNNASQIWNHTFFWYSIKP--HGGGKPS-GKVFEQISKDFGSFEQFCAQFKQEAVGQFGSGWTWV-VYHDNKLQIIKTSNAGTPIVN---FMKPILACDVWEHAYYIDYRNKRSDYIDIFIRHMINWKFVED 205          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_MYCCH (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium chelonae GN=sodA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.027e-23
Identity = 59/142 (41.55%), Postives = 81/142 (57.04%), Query Frame = 1
Query:   61 HQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHA 486
            H KHH AYV   N AV +L +A  K D + +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + +A    LQGSGW  LG D+  ++L+     +Q   V     ++PLL +D+WEHA
Sbjct:    2 HSKHHAAYVAGVNSAVAKLEEAREKGDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---NGGDKPTGDLAAAIDDQFGSFDKFQAQFTAAANGLQGSGWAVLGYDSLGQKLLTFQLYDQQANVPLG--IIPLLQVDMWEHA 138          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODF_HELPY (Superoxide dismutase [Fe] OS=Helicobacter pylori GN=sodB PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.647e-23
Identity = 61/194 (31.44%), Postives = 96/194 (49.48%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL-FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL-VVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 576
            LP+   ++   +S      HH KHHQ YV N N  ++   F+  +  D  T  +  G +  N     NH  +W  L+P      +     L  A++  FGSLE   +        L GSGW W   + + +++ +++T+  Q P+  K    VPLL +DVWEHAYY+ +KN +P YL+  +  +NW + S  Y+
Sbjct:    7 LPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFDILT--KSSGGVFNNAAQIYNHDFYWDCLSPKATALSD----ELKGALEKDFGSLEKFKEDFIKSATTLFGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKK---VPLLVVDVWEHAYYIDHKNARPVYLEKFYGHINWHFVSQCYE 191          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODF_BABBO (Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.515e-23
Identity = 71/204 (34.80%), Postives = 98/204 (48.04%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL----QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKECP*AWS 600
            LPY    L P IS E +  H+ KHH  YV   N  ++        +++ T+ +L     GA+  N     NH+ +W ++ P    GGEP    +   I+  FGS  A     S   A   GSGW WL L  +    +V+T     PL  K     PLL  DVWEHAYY+ YKN +  Y+ + WN++NW +A+     E P  WS
Sbjct:    8 LPYGMRELIPHISEETLSFHYGKHHAGYVNKLNSLIKG-----TPLESCTIEELILGQTGAVFNNAAQIWNHTFYWNSMGP--NCGGEPT-GPIRKKIEEKFGSFSAFKTDFSNLLAGHFGSGWGWLVLKDDGTADIVQTHDAGSPL--KENLGRPLLCCDVWEHAYYIDYKNDRLSYINSWWNLVNWDFANK--NLEAPFKWS 199          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODF_RICTY (Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi GN=sodB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.896e-23
Identity = 63/195 (32.31%), Postives = 98/195 (50.26%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG----AIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLK-NIWNVMNWKYASD 567
            LPY   + +P  + E    HH KHH +YV N N  ++   + L K D   +++          FN    + NH+ FW ++ P   GGG+P    +   I   FGS E   ++   E     GSGWVW+  +   K  +++T+    P+V     + P+L  DVWEHAYY+ Y+N + DY+   I +++NWK+  D
Sbjct:   19 LPYAKESFKPHFTCETFDYHHGKHHNSYVQNLNNLLKDR-EELQKKDLEGIIKWSSKNSEVTVFNNASQIWNHTFFWYSIKP--HGGGKPS-GKVFEQISQDFGSFEQFCEQFKQEALGQFGSGWVWVVYNNN-KLQIIKTSNADTPIVN---LMKPILVCDVWEHAYYIDYRNKRSDYIDIFISHMINWKFVED 205          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_MYCCE (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium celatum GN=sodA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.006e-22
Identity = 61/146 (41.78%), Postives = 82/146 (56.16%), Query Frame = 1
Query:   58 HHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD---PLVTKAPTLVPLLGIDVWEHA 486
            HH KHH  YV   N A+E+L +A  K D STV+  +  + FN  GHVNH+I+WKNL+P    GG+ P   L  AID  FGS +    +  A    +QGSGW  LG D   ++L++    +     PL      +VPLL +D+WEHA
Sbjct:    1 HHSKHHATYVKGANDALEKLEEARAKDDQSTVLLNEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIDDAFGSFDKFRAQFHAAATTVQGSGWAALGWDNLGEKLLIFQVYDHQSNFPL-----GVVPLLLLDMWEHA 138          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODF_HELPJ (Superoxide dismutase [Fe] OS=Helicobacter pylori J99 GN=sodB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.006e-22
Identity = 62/200 (31.00%), Postives = 94/200 (47.00%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE-------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL-VVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 576
            LP+   ++   +S      HH KHHQ YV N N  ++        LF  L K          G +  N     NH  +W  L+P      +     L  A++  FGSLE   +        L GSGW W   + + +++ +++T+  Q P+  K    VPLL +DVWEHAYY+ +KN +P YL+  +  +NW + S  Y+
Sbjct:    7 LPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFAILTKSS--------GGVFNNAAQIYNHDFYWDCLSPKATALSD----ELKEALEKDFGSLEKFKEDFIKSATTLFGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKK---VPLLVVDVWEHAYYIDHKNARPVYLEKFYGHVNWHFVSQCYE 191          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_MYCMR (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium marinum GN=sodA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.241e-22
Identity = 60/143 (41.96%), Postives = 80/143 (55.94%), Query Frame = 1
Query:   61 HQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHA 486
            H KHH  YV   N AV +L +A  K D ST++  +  + FN  GHVNH+I+WKNL+P    GG+ P   L  AID  FGS +    +  A    +QGSGW  LG DT   +L++    +     T  P  +VPLL +D+WEHA
Sbjct:    2 HSKHHATYVKGANDAVTKLEEARAKEDHSTILLNEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIDEAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWEHA 138          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_MYCSZ (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium szulgai GN=sodA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.515e-22
Identity = 58/143 (40.56%), Postives = 80/143 (55.94%), Query Frame = 1
Query:   61 HQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHA 486
            H KHH  YV   N AV +L +A  + D S+++  +  + FN  GHVNH+I+WKNL+P    GG+ P   L  AID  FGS +    +  A    +QGSGW  LG DT   +L++    +     T  P  +VPLL +D+WEHA
Sbjct:    2 HSKHHATYVKGANDAVAKLEEARAQEDFSSILLSEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIDDAFGSFDTFSAQFHAASTTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWEHA 138          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_MYCPH (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium phlei GN=sodA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.477e-21
Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = 1
Query:   61 HQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHA 486
            H KHH  YV   N A+ +L +A    D   +   +  + F+ GGHVNH+I+WKNL+P    GG+ P   L  AID  FGS +    + +A    LQGSGW  LG DT   RL+     +Q   V     ++PLL +D+WEHA
Sbjct:    2 HSKHHATYVKGVNDAIAKLEEARANGDHGAIFLHEKNLAFHLGGHVNHTIWWKNLSP---HGGDKPTGDLAAAIDDQFGSFDNFRAQFTAAANGLQGSGWAVLGYDTLGDRLLTFQLYDQQANVPLG--IIPLLLVDMWEHA 138          
The following BLAST results are available for this feature:
BLAST of DR908105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODF_RICPR1.552e-2332.82Superoxide dismutase [Mn/Fe] OS=Rickettsia prowaze... [more]
SODM_MYCCH2.027e-2341.55Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODF_HELPY2.647e-2331.44Superoxide dismutase [Fe] OS=Helicobacter pylori G... [more]
SODF_BABBO4.515e-2334.80Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB... [more]
SODF_RICTY5.896e-2332.31Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi G... [more]
SODM_MYCCE1.006e-2241.78Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODF_HELPJ1.006e-2231.00Superoxide dismutase [Fe] OS=Helicobacter pylori J... [more]
SODM_MYCMR2.241e-2241.96Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODM_MYCSZ8.515e-2240.56Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODM_MYCPH2.477e-2140.14Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16233 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908105 ID=DR908105; Name=DR908105; organism=Citrus sinensis; type=EST; length=722bp
CTTCCGTACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTAT
GCAGCTTCATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACA
AGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATACGTCCACC
GTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAA
CCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCG
AGCCACCACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCT
CTGGAAGCATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGG
CTCTGGATGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGG
TTGAAACTACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTG
GTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGCATACTACCTACAGTA
CAAGAATGTCAAACCAGATTATCTGAAAAACATTTGGAACGTAATGAACT
GGAAGTATGCTAGTGATGTGTATCAGAAAGAATGCCCTTAAGCTTGGAGC
TCTTCCTTGAGCATGGAGTTCTTCGTTTGATCTGGGTTCTCTCTTGGGTT
CAAGAGACGAATATCCTTGCAGCTTTTCACGCTGAAGTGACATAAAACGA
TATTTTGCAGATGATGACAGAC
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