DR908105

Overview
NameDR908105
Unique NameDR908105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_STRIN (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus iniae GN=sodA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.555e-15
Identity = 52/139 (37.41%), Postives = 76/139 (54.68%), Query Frame = 1
Query:   43 EIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTK 438
            E M LHH KHH  YV N N A+E+       L + L  V+ S    ++ A+  NGGGH+NH++FW+ L+P      +   S    AID  FGS +A  ++ +A      GSGW WL + T+   L + +TANQD  +++
Sbjct:    5 ETMTLHHDKHHATYVANANAALEKHPEIGENLEELLANVE-SIPADIRQALINNGGGHLNHALFWELLSPEKTEVTKEVAS----AIDQAFGSFDAFKEQFAAAATGRFGSGWAWL-VVTKEGSLEITSTANQDTPISE 137          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_STRAI (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus acidominimus GN=sodA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 1
Query:   34 ISGEIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 468
            I  E M LHH KHH  YV N N A+E+       L   L+ VD +    ++ A+  NGGGH+NH++FW+ L+P          + L   ID  FGS +A  +  +       GSGW +L ++ + K L V +TANQD  +T+   L P+L +
Sbjct:    2 IDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLSDVD-ALPADIRQALINNGGGHLNHALFWELLSPEK----TEISAELAADIDETFGSFDAFKEAFTTAATTRFGSGWAFLVVNPKGK-LEVISTANQDTPITQG--LKPILAL 145          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_STRAY (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus alactolyticus GN=sodA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.246e-14
Identity = 53/151 (35.10%), Postives = 77/151 (50.99%), Query Frame = 1
Query:   34 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 468
            I  E M LHH KHH  Y+ N N A+E+  +    ++      T     ++ A+  NGGGH+NH++FW+ L P  +   EP    L  AI+  FGS E      +       GSGW WL ++ E K L V +T NQD  +++     P+LG+
Sbjct:    2 IDKETMILHHDKHHATYLANANAALEKHPEIGEDLEFLLSDVTRIPEDIRQALINNGGGHLNHALFWELLTPEKQ---EPTAEVLA-AIEDAFGSFEDFKTAFTQAATTRFGSGWAWLVVNQEGK-LEVMSTGNQDNPISQGKQ--PILGL 145          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_HALHI (Superoxide dismutase [Mn] (Fragment) OS=Haloarcula hispanica GN=sod PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 49/148 (33.11%), Postives = 64/148 (43.24%), Query Frame = 1
Query:   82 YVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYL 525
            YV     A E L +     D  +     G +  NG GH  H++FW+N+ P   GGGEP    L   I+  FGS E    K   E AA    GW  L  D   K+L        D          P+L +DVWEH+YY  Y   + D++
Sbjct:    2 YVNGLESAEETLAENRESGDFGSSAAAMGNVTHNGCGHYLHTLFWENMDP--NGGGEPEGELLD-RIEEDFGSYEG--WKGEFEAAASAAGGWALLVYDPVAKQLRNVPVDKHDQGALWGSH--PILALDVWEHSYYYDYGPARGDFI 142          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM2_HALME (Superoxide dismutase [Mn] 2 (Fragment) OS=Halobacterium mediterranei GN=sod2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 46/141 (32.62%), Postives = 64/141 (45.39%), Query Frame = 1
Query:   82 YVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL-VVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQY 501
            YV   N A E L +  +  D         ++  NG GH  H +FW+ + P   GGG  P   L   I++ FGS E   +    E A+    GW  L  D   K+L  +    + D  +  A    P+L +DVWEH+YY QY
Sbjct:    2 YVNGLNAAEETLRENRSSGDMDGSAAAMRSVSHNGCGHYLHHLFWRCMTP--NGGGGEPTGDLRDRIESDFGSYEGW-EAEFREAASWPAGGWALLVYDPVTKQLRNLAVQKHNDGALWSAH---PILALDVWEHSYYFQY 136          
The following BLAST results are available for this feature:
BLAST of DR908105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_STRIN1.555e-1537.41Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODM_STRAI4.525e-1536.18Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODM_STRAY2.246e-1435.10Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODM_HALHI4.683e-1233.11Superoxide dismutase [Mn] (Fragment) OS=Haloarcula... [more]
SODM2_HALME3.964e-1132.62Superoxide dismutase [Mn] 2 (Fragment) OS=Halobact... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16233 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908105 ID=DR908105; Name=DR908105; organism=Citrus sinensis; type=EST; length=722bp
CTTCCGTACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTAT
GCAGCTTCATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACA
AGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATACGTCCACC
GTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAA
CCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCG
AGCCACCACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCT
CTGGAAGCATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGG
CTCTGGATGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGG
TTGAAACTACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTG
GTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGCATACTACCTACAGTA
CAAGAATGTCAAACCAGATTATCTGAAAAACATTTGGAACGTAATGAACT
GGAAGTATGCTAGTGATGTGTATCAGAAAGAATGCCCTTAAGCTTGGAGC
TCTTCCTTGAGCATGGAGTTCTTCGTTTGATCTGGGTTCTCTCTTGGGTT
CAAGAGACGAATATCCTTGCAGCTTTTCACGCTGAAGTGACATAAAACGA
TATTTTGCAGATGATGACAGAC
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