DR908105

Overview
NameDR908105
Unique NameDR908105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_CHLTR (Superoxide dismutase [Mn] OS=Chlamydia trachomatis GN=sodA PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.102e-53
Identity = 98/187 (52.41%), Postives = 131/187 (70.05%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKY 558
            LPYDY ALEP IS EIMQLHHQKHHQ Y+ N N+A++ L  A    D + ++ +  A++FNGG H+NHS+FW+ LAP  +GGG PP   L   I+  +GS +  ++      AA+QGSGW WL    + + L+V+TTANQDPL  +A T ++PLLG+DVWEHAYYLQYKN + DYLK+  +++NW Y
Sbjct:   11 LPYDYDALEPVISAEIMQLHHQKHHQGYINNLNEALKSLDVANATQDLARLIAINPALRFNGGSHINHSLFWEMLAPQGKGGGVPPRHELLKLIEKFWGSFDNFLKNFITSSAAVQGSGWGWLAFCPQKQELMVQTTANQDPL--EATTGMIPLLGVDVWEHAYYLQYKNARMDYLKSFPSIINWDY 195          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM2_CAEEL (Superoxide dismutase [Mn] 2, mitochondrial OS=Caenorhabditis elegans GN=sod-3 PE=1 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 9.327e-53
Identity = 104/189 (55.03%), Postives = 129/189 (68.25%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 567
            LP+DY+ LEP IS EIMQLHHQKHH  YV N N+  E+L +A++K +    + LQ A+KFNGGGH+NHSIFW NLA   + GGEP    +   I   FGSL+ L +++S    A+QGSGW WLG   + K L + T ANQDPL      +VPL GIDVWEHAYYLQYKNV+PDY+  IW + NWK  S+
Sbjct:   31 LPFDYADLEPVISHEIMQLHHQKHHATYVNNLNQIEEKLHEAVSKGNLKEAIALQPALKFNGGGHINHSIFWTNLA---KDGGEPSKELMD-TIKRDFGSLDNLQKRLSDITIAVQGSGWGWLGYCKKDKILKIATCANQDPL----EGMVPLFGIDVWEHAYYLQYKNVRPDYVHAIWKIANWKNISE 211          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_ONCVO (Superoxide dismutase [Mn], mitochondrial OS=Onchocerca volvulus GN=sod-2 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.078e-52
Identity = 102/193 (52.85%), Postives = 127/193 (65.80%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 579
            LPYDY ALEP +S EIMQ+HH KHH AYV   N+A E++ +AL K DT   V     + FN GGH+NH++FW+ L  V   G   P+S L  AI   FGSLE +I K++A+  A+QGSGW WL  D E KRL +    NQD L+     L+PL  IDVWEHAYYLQYKN++PD++K IW + NWK  SD Y K
Sbjct:   31 LPYDYGALEPILSAEIMQVHHGKHHAAYVNALNQAEEKVKEALAKGDTQAAVAGTKLMNFNTGGHINHTLFWEGLTAVKNSG--EPNSELMTAIKKDFGSLETMIDKLNAKTIAIQGSGWGWLAYDKEMKRLQLACCPNQD-LLEPTTGLIPLFCIDVWEHAYYLQYKNLRPDFVKAIWKIANWKIISDRYIK 220          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_DROME (Superoxide dismutase [Mn], mitochondrial OS=Drosophila melanogaster GN=Sod2 PE=2 SV=3)

HSP 1 Score: 205.297 bits (521), Expect = 2.714e-52
Identity = 99/193 (51.30%), Postives = 133/193 (68.91%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 579
            LPYDY+ALEP I  EIM+LHHQKHHQ YV N N A EQL +A +K DT+ ++QL  A++FNGGGH+NH+IFW+NL+P        P   L  AI++ + SLE   ++++    A+QGSGW WLG + +  +L +    NQDPL   +  L+PL GIDVWEHAYYLQYKNV+P Y++ IW++ NW   S  +Q+
Sbjct:   24 LPYDYAALEPIICREIMELHHQKHHQTYVNNLNAAEEQLEEAKSKSDTTKLIQLAPALRFNGGGHINHTIFWQNLSP----NKTQPSDDLKKAIESQWKSLEEFKKELTTLTVAVQGSGWGWLGFNKKSGKLQLAALPNQDPL-EASTGLIPLFGIDVWEHAYYLQYKNVRPSYVEAIWDIANWDDISCRFQE 211          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_CAVPO (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Cavia porcellus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.046e-52
Identity = 104/182 (57.14%), Postives = 124/182 (68.13%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 546
            LPYDY AL+P I+ EIMQLHH KHH AY+ N N A E+  +AL K D +  V LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS +   +K++A    +QGSGW WLG + E   L +   +NQDPL      L+PLLGIDVWEHAYYLQ KNV+PDYLK IW V+
Sbjct:   31 LPYDYGALQPHINAEIMQLHHSKHHAAYLNNLNIAEEKYQEALAKGDVTAQVALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTAVSVGVQGSGWGWLGFNKERGCLQIAACSNQDPL-QGTTGLIPLLGIDVWEHAYYLQLKNVRPDYLKAIWKVI 208          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_SCHPO (Superoxide dismutase [Mn], mitochondrial OS=Schizosaccharomyces pombe GN=sod2 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.000e-51
Identity = 107/192 (55.73%), Postives = 131/192 (68.23%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHS-SLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 573
            LPY Y+ALEPA+S  IM+LHH KHHQ YV N N A E+L  A   +D    V LQ AIKFNGGGH+NHS+FWK LAP  EGGG+P  S SL  AI + +GSLE   ++M+A  A++QGSGW WL +D +   L + TTANQD +V   P    ++GID WEHAYY QY+N K +Y K IWNV+NWK A   Y
Sbjct:   31 LPYAYNALEPALSETIMKLHHDKHHQTYVNNLNAAQEKL--ADPNLDLEGEVALQAAIKFNGGGHINHSLFWKILAPQKEGGGKPVTSGSLHKAITSKWGSLEDFQKEMNAALASIQGSGWAWLIVDKDGS-LRITTTANQDTIVKSKP----IIGIDAWEHAYYPQYENRKAEYFKAIWNVINWKEAESRY 215          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_CANAL (Superoxide dismutase [Mn], mitochondrial OS=Candida albicans GN=SOD2 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.140e-50
Identity = 98/190 (51.58%), Postives = 132/190 (69.47%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPP--HSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLD-TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYA 561
            L Y++SA EP ISG+I ++H+ KHHQ YV N N ++EQ  +A +K +   +V L+ AI FNGGG++NH ++WKNLAPV +GGG+PP   S LG  I   FGSL+ LI+  + + A +QGSGW ++  +      + V TTANQD +    P LVPL+ ID WEHAYYLQY+NVK DY KN+W+V+NWK A
Sbjct:   41 LDYEFSATEPYISGQINEIHYTKHHQTYVNNLNASIEQAVEAKSKGEVKKLVALEKAINFNGGGYLNHCLWWKNLAPVSQGGGQPPSEDSKLGKQIVKQFGSLDKLIEITNGKLAGIQGSGWAFIVKNKANGDTIDVITTANQDTVTD--PNLVPLIAIDAWEHAYYLQYQNVKADYFKNLWHVINWKEA 228          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_GANMI (Superoxide dismutase [Mn], mitochondrial OS=Ganoderma microsporum PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.333e-50
Identity = 99/191 (51.83%), Postives = 131/191 (68.59%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHE----GGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYA 561
            LPY Y+ALEP IS +IM+LHH+KHHQ YV + N A +   +A    +    + LQ A+KFNGGGH+NHS+FWKNLAP        GG      L  AI+ ++GS++  I++ +A  AA+QGSGW WLGL+   KRL + TTANQDPL++     VP++G+D+WEHA+YLQY NVK DYL  IW V+N+K A
Sbjct:    8 LPYAYNALEPFISQQIMELHHKKHHQTYVNSLNAAEQAYAKASTPKER---IALQSALKFNGGGHINHSLFWKNLAPAKSEGKGNGGALADGPLKSAIEQNWGSVDNFIKEFNATTAAIQGSGWGWLGLNPATKRLEITTTANQDPLLSH----VPIIGVDIWEHAFYLQYLNVKADYLAAIWIVINFKEA 191          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_CHAFE (Superoxide dismutase [Mn], mitochondrial OS=Charybdis feriatus PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.171e-49
Identity = 104/177 (58.76%), Postives = 123/177 (69.49%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLK 528
            LPYDY ALEP IS EIMQLHH KHHQ YV N N A E+L +A  K D ST++ L  A++FNGGGH+NHSIFW+NL+     GGEP    L  AI+  FGS+E +  ++SA+  A+QGSGW WLG   E   L + T  NQDPL  +A T LVPL GIDVWEHAYYLQYKNV+   LK
Sbjct:   27 LPYDYGALEPTISAEIMQLHHSKHHQTYVNNLNVAEEKLAEAKEKGDVSTIISLAPALRFNGGGHINHSIFWQNLS---ADGGEPEGELLA-AINRDFGSVENMKNQLSAQTVAVQGSGWGWLGYIAE-GALQIATCPNQDPL--EATTGLVPLFGIDVWEHAYYLQYKNVRRIMLK 196          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODF_TETPY (Superoxide dismutase [Fe] OS=Tetrahymena pyriformis PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.180e-47
Identity = 94/193 (48.70%), Postives = 119/193 (61.66%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPP--HSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 573
            L Y+YS LEP +S  ++  HH KHHQAYV N N   EQ+  A  + D   +  LQ A++FN GGHVNH I+W NLAPV  GGG  P  HS L  AI   +GS E  I   +   AA+QGSGW WLG DT  K L +    NQD  + +  ++VPLL IDVWEHAYYL Y+N++P YL  +W ++NW+     Y
Sbjct:    1 LNYEYSDLEPVLSAHLLSFHHGKHHQAYVNNLNATYEQIAAATKENDAHKIATLQSALRFNLGGHVNHWIYWDNLAPVKSGGGVLPDEHSPLTKAIKEKWGSYENFITLFNTRTAAIQGSGWGWLGYDTVSKSLRLFELGNQD--MPEWSSIVPLLTIDVWEHAYYLDYQNLRPKYLTEVWKIVNWREVEKRY 191          
The following BLAST results are available for this feature:
BLAST of DR908105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_CHLTR1.102e-5352.41Superoxide dismutase [Mn] OS=Chlamydia trachomatis... [more]
SODM2_CAEEL9.327e-5355.03Superoxide dismutase [Mn] 2, mitochondrial OS=Caen... [more]
SODM_ONCVO2.078e-5252.85Superoxide dismutase [Mn], mitochondrial OS=Onchoc... [more]
SODM_DROME2.714e-5251.30Superoxide dismutase [Mn], mitochondrial OS=Drosop... [more]
SODM_CAVPO6.046e-5257.14Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_SCHPO3.000e-5155.73Superoxide dismutase [Mn], mitochondrial OS=Schizo... [more]
SODM_CANAL1.140e-5051.58Superoxide dismutase [Mn], mitochondrial OS=Candid... [more]
SODM_GANMI4.333e-5051.83Superoxide dismutase [Mn], mitochondrial OS=Ganode... [more]
SODM_CHAFE8.171e-4958.76Superoxide dismutase [Mn], mitochondrial OS=Charyb... [more]
SODF_TETPY1.180e-4748.70Superoxide dismutase [Fe] OS=Tetrahymena pyriformi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16233 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908105 ID=DR908105; Name=DR908105; organism=Citrus sinensis; type=EST; length=722bp
CTTCCGTACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTAT
GCAGCTTCATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACA
AGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATACGTCCACC
GTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAA
CCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCG
AGCCACCACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCT
CTGGAAGCATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGG
CTCTGGATGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGG
TTGAAACTACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTG
GTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGCATACTACCTACAGTA
CAAGAATGTCAAACCAGATTATCTGAAAAACATTTGGAACGTAATGAACT
GGAAGTATGCTAGTGATGTGTATCAGAAAGAATGCCCTTAAGCTTGGAGC
TCTTCCTTGAGCATGGAGTTCTTCGTTTGATCTGGGTTCTCTCTTGGGTT
CAAGAGACGAATATCCTTGCAGCTTTTCACGCTGAAGTGACATAAAACGA
TATTTTGCAGATGATGACAGAC
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