DR908105

Overview
NameDR908105
Unique NameDR908105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_DEBHA (Probable superoxide dismutase [Mn], mitochondrial OS=Debaryomyces hansenii GN=DEHA2E01232g PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.013e-47
Identity = 96/191 (50.26%), Postives = 129/191 (67.54%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHS--SLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTE-FKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 564
            L + Y +LEP ISG+I ++HH+KHHQ YV  YN A+EQL +A ++ D    + +Q  IKF+GGGH NH +FWK+LAP  + GG+ P S  +LG  I   +GS++ LI   +A+ A++QGSGW ++  + +    L V TT NQD   T    LVPL+ ID WEHAYYLQY+NVK DY K IWNV+NW+ AS
Sbjct:   17 LDWAYDSLEPYISGKINEIHHKKHHQTYVNGYNSAIEQLIEAESQGDVKKAIVIQQNIKFHGGGHTNHVLFWKSLAPNSQNGGKHPGSDTNLGKKIIEQYGSIDNLISITNAKLASIQGSGWAFIVKNKQNGGNLDVVTTYNQD---TVTDPLVPLIAIDAWEHAYYLQYQNVKADYFKAIWNVINWEEAS 204          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_YEAST (Superoxide dismutase [Mn], mitochondrial OS=Saccharomyces cerevisiae GN=SOD2 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.304e-46
Identity = 98/197 (49.75%), Postives = 129/197 (65.48%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKV--------DTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLD-TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 564
            L +D+ ALEP ISG+I +LH+ KHHQ YV  +N AV+Q FQ L+ +        +   ++ +Q  IKF+GGG  NH +FW+NLAP  +GGGEPP  +L  AID  FGSL+ LI+  + + A +QGSGW ++  + +   +L V  T NQD   T    LVPL+ ID WEHAYYLQY+N K DY K IWNV+NWK AS
Sbjct:   33 LKWDFGALEPYISGQINELHYTKHHQTYVNGFNTAVDQ-FQELSDLLAKEPSPANARKMIAIQQNIKFHGGGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDELIKLTNTKLAGVQGSGWAFIVKNLSNGGKLDVVQTYNQD---TVTGPLVPLVAIDAWEHAYYLQYQNKKADYFKAIWNVVNWKEAS 225          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_ASPFU (Superoxide dismutase [Mn], mitochondrial OS=Aspergillus fumigatus GN=sodB PE=1 SV=3)

HSP 1 Score: 186.037 bits (471), Expect = 1.704e-46
Identity = 93/192 (48.44%), Postives = 119/192 (61.98%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSS-LGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 573
            LPY Y AL+P IS +IM+LHH+KHHQ YV   N A+E   +A    D   +V +Q AIKFNGGGH+NHS+FWKNLAP   GGG+   +  L  AI+  +GS +      +     +QGSGW WL  D    +L + TT +QDP+   A    P+ G+D+WEHAYYLQY N K  Y K IWNV+NW  A + Y
Sbjct:   10 LPYPYDALQPYISQQIMELHHKKHHQTYVNGLNAALEAQKKAAEANDVPKLVSVQQAIKFNGGGHINHSLFWKNLAPEKSGGGKIDQAPVLKAAIEQRWGSFDKFKDAFNTTLLGIQGSGWGWLVTDGPKGKLDITTTHDQDPVTGAA----PVFGVDMWEHAYYLQYLNDKASYAKGIWNVINWAEAENRY 197          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_NEUCR (Superoxide dismutase [Mn], mitochondrial OS=Neurospora crassa GN=sod-2 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.455e-46
Identity = 96/196 (48.98%), Postives = 123/196 (62.76%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVH--EGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDT--EFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 576
            LPY Y+ALEP IS +IM+LHH KHHQ YVTN N A++    A+   D    +  Q AIKFNGGGH+NHS+FWKNLAP    E        SL   I+  +GS +   +  SA    +QGSGW WL  ++  E  RL + TT +QDP+V      VP+ G+D+WEHAYYLQY N K  Y++NIW V+NWK A + +Q
Sbjct:   39 LPYAYNALEPYISAQIMELHHSKHHQTYVTNLNNALKVHVAAIASSDIPAQIAQQPAIKFNGGGHINHSLFWKNLAPAETPETNYSKAAPSLAAEIEKTWGSFDEFKKAFSAALLGIQGSGWGWLVKESTAEKGRLRIITTKDQDPVVGGE---VPVFGVDMWEHAYYLQYLNGKAAYVENIWKVINWKTAEERFQ 231          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_GLOMM (Superoxide dismutase [Mn], mitochondrial OS=Glossina morsitans morsitans GN=Sod2 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.460e-45
Identity = 90/191 (47.12%), Postives = 118/191 (61.78%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 573
            LPYDY AL P IS +I+++HH KHHQ YV N N   EQ+ +A +K D + VV+L     FN GGH+NHSI+W+NL+P        P + L  AI+  F S E   + +SA    +QGSGW WLG + + K+L +   +NQ+PL      LVPL  IDVWEHAYYLQ KN    Y++  W++ NWK  SD Y
Sbjct:   25 LPYDYGALAPIISKDILEVHHGKHHQTYVNNLNAVEEQMTEAHSKKDVNKVVELSKNYAFNWGGHLNHSIYWQNLSPTK----SEPSADLKKAIEEQFSSFEQFKKDLSALSIGVQGSGWGWLGYNKKXKKLQILAVSNQEPL-QAVTGLVPLFAIDVWEHAYYLQXKNXXAKYVEAXWDIANWKBISDRY 210          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_PROFR (Superoxide dismutase [Mn/Fe] OS=Propionibacterium freudenreichii subsp. shermanii GN=sodA PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.196e-45
Identity = 92/184 (50.00%), Postives = 118/184 (64.13%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 552
            LPYDYSALEP ISGEIM+LHH KHH+AYV   N A+++L +A +K D   + +L+  + FN  GHVNHS+FWKN+AP      E P   LG AID  FGS + +  + +A    +QGSGW  L  D   KR  + T    D         +PLL +D+WEHA+YLQYKNVK DY+K+ WNV+NW
Sbjct:    8 LPYDYSALEPYISGEIMELHHDKHHKAYVDGANTALDKLAEARDKADFGAINKLEKDLAFNLAGHVNHSVFWKNMAP-KGSAPERPTDELGAAIDEFFGSFDNMKAQFTAAATGIQGSGWASLVWDPLGKR--INTLQFYDHQNNLPAGSIPLLQLDMWEHAFYLQYKNVKGDYVKSWWNVVNW 188          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_ASPOR (Superoxide dismutase [Mn], mitochondrial OS=Aspergillus oryzae GN=sodB PE=3 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 7.158e-45
Identity = 90/194 (46.39%), Postives = 120/194 (61.86%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAP--VHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 576
            LPY Y ALEP I  +IM++HHQKHHQ Y+TN N A+     AL   +   ++ LQ  IKFNGGGH+NHS+FWKNLAP    E   +     L  AI+  +GS+E   +   A    LQGSGW WL  +    +L + +T +QDP+  K    VP+ G+D+WEHAYYLQY N K  Y++ IW V+NW+ A D ++
Sbjct:   10 LPYAYDALEPVICKQIMEIHHQKHHQTYITNLNAALSAQSTALAANNIPQLINLQQKIKFNGGGHINHSLFWKNLAPHASPETNIDQAAPVLKAAIEAQYGSVEKFKEAFGATLLGLQGSGWGWLVANGPGGKLEIVSTKDQDPVTDK----VPVFGVDMWEHAYYLQYFNNKASYVEGIWKVLNWRTAEDRFK 199          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_PENCH (Superoxide dismutase [Mn], mitochondrial OS=Penicillium chrysogenum GN=SOD PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.720e-44
Identity = 94/196 (47.96%), Postives = 122/196 (62.24%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNL----APVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFK-RLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 573
            LPY Y ALEP IS +IM+LHHQKHHQ Y+ N N A+     A    D  T++ LQ  ++FNGGGH+NHS+FWKNL     P ++  G P   +L  AI + +GS EA ++   AE   LQGSGW WL      K RL + TT +QDP+   AP  VP+ G+D+WEHAYYLQY N K  Y++ IW +++W  A   Y
Sbjct:   11 LPYAYDALEPVISKQIMELHHQKHHQTYINNLNAALSAQASATASNDVPTLISLQQKLRFNGGGHINHSLFWKNLTPPGTPANDIAGAP---ALREAIVSRWGSHEAFVKAFGAELLGLQGSGWGWLVSKGGAKGRLEIVTTKDQDPV--NAPD-VPVFGVDMWEHAYYLQYLNNKAGYVEGIWKIIHWAEAEKRY 200          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODB_ASPNG (Superoxide dismutase [Mn], mitochondrial OS=Aspergillus niger GN=sodB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.552e-44
Identity = 89/193 (46.11%), Postives = 118/193 (61.14%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHS--SLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 573
            LPYDY ALEP IS +IM+LHH+KHHQ YV N N A+     AL+  D + ++ +Q  +KFNGGGH+NHS+FWKNLA           S  SL  AI+  +GS++       A    +QGSGW WL    +   L + TT +QDP+       +P+ G+D+WEHAYYLQY N K  Y++NIW V+NW+ A   Y
Sbjct:   10 LPYDYDALEPIISKQIMELHHKKHHQTYVNNLNAALASQASALDSNDITQLISIQQKLKFNGGGHINHSLFWKNLARYDSPATNLERSAPSLKDAIEKQWGSVKNFTDAFEAVLLGIQGSGWGWLVSSGKTGFLEIVTTKDQDPVTGP----IPVFGVDMWEHAYYLQYLNNKASYVQNIWKVINWEEAEHRY 198          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_NOCAS (Superoxide dismutase [Mn] OS=Nocardia asteroides GN=sodA PE=3 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.034e-43
Identity = 92/193 (47.67%), Postives = 118/193 (61.14%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 579
            L YDYSALEP ISG+I +LHH KHH AYV   N A+E+L  A    D S +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + +A    LQGSGW  LG DT  ++L+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+   WNV+NW    D + K
Sbjct:    9 LDYDYSALEPHISGQINELHHSKHHAAYVAGANTALEKLEAAREAGDHSAIFLHEKNLAFHLGGHVNHSIWWKNLSP---NGGDKPVGELAAAIDDQFGSFDKFRAQFTAAANGLQGSGWAVLGYDTLGQKLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVTAFWNVVNWADVQDRFGK 196          
The following BLAST results are available for this feature:
BLAST of DR908105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_DEBHA2.013e-4750.26Probable superoxide dismutase [Mn], mitochondrial ... [more]
SODM_YEAST1.304e-4649.75Superoxide dismutase [Mn], mitochondrial OS=Saccha... [more]
SODM_ASPFU1.704e-4648.44Superoxide dismutase [Mn], mitochondrial OS=Asperg... [more]
SODM_NEUCR8.455e-4648.98Superoxide dismutase [Mn], mitochondrial OS=Neuros... [more]
SODM_GLOMM2.460e-4547.12Superoxide dismutase [Mn], mitochondrial OS=Glossi... [more]
SODM_PROFR4.196e-4550.00Superoxide dismutase [Mn/Fe] OS=Propionibacterium ... [more]
SODM_ASPOR7.158e-4546.39Superoxide dismutase [Mn], mitochondrial OS=Asperg... [more]
SODM_PENCH2.720e-4447.96Superoxide dismutase [Mn], mitochondrial OS=Penici... [more]
SODB_ASPNG3.552e-4446.11Superoxide dismutase [Mn], mitochondrial OS=Asperg... [more]
SODM_NOCAS1.034e-4347.67Superoxide dismutase [Mn] OS=Nocardia asteroides G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16233 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908105 ID=DR908105; Name=DR908105; organism=Citrus sinensis; type=EST; length=722bp
CTTCCGTACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTAT
GCAGCTTCATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACA
AGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATACGTCCACC
GTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAA
CCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCG
AGCCACCACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCT
CTGGAAGCATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGG
CTCTGGATGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGG
TTGAAACTACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTG
GTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGCATACTACCTACAGTA
CAAGAATGTCAAACCAGATTATCTGAAAAACATTTGGAACGTAATGAACT
GGAAGTATGCTAGTGATGTGTATCAGAAAGAATGCCCTTAAGCTTGGAGC
TCTTCCTTGAGCATGGAGTTCTTCGTTTGATCTGGGTTCTCTCTTGGGTT
CAAGAGACGAATATCCTTGCAGCTTTTCACGCTGAAGTGACATAAAACGA
TATTTTGCAGATGATGACAGAC
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