DR908105

Overview
NameDR908105
Unique NameDR908105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_STAES (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sodA PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.545e-39
Identity = 83/197 (42.13%), Postives = 118/197 (59.90%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 573
            LPY Y ALEP I  + M++HH KHH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  GE         I   +GSL+   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+  +++Y
Sbjct:    8 LPYAYDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDLEAKSIEEIVANLDSVPSNIQTAVRNNGGGHLNHSLFWELLSPNSEEKGEVVDK-----IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPITEGKT--PILGLDVWEHAYYLKYQNKRPDYINAFWNVVNWEKVNELY 195          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_STAEQ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sodA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.545e-39
Identity = 83/197 (42.13%), Postives = 118/197 (59.90%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 573
            LPY Y ALEP I  + M++HH KHH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  GE         I   +GSL+   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+  +++Y
Sbjct:    8 LPYAYDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDLEAKSIEEIVANLDSVPSNIQTAVRNNGGGHLNHSLFWELLSPNSEEKGEVVDK-----IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPITEGKT--PILGLDVWEHAYYLKYQNKRPDYINAFWNVVNWEKVNELY 195          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_LISIV (Superoxide dismutase [Mn] OS=Listeria ivanovii GN=sodA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.635e-39
Identity = 80/191 (41.88%), Postives = 118/191 (61.78%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 552
            LPY Y ALEP    E M++H+ KHH  YVT  N+AV    +  +K     V  L       +GA++ +GGGH NH++FW +L+P    GG  P  +L  AI++ FG+ +   +K +A  AA  GSGW WL ++    +L + +TANQD  +++  T  P+LG+DVWEHAYYL+++N +P+Y+   WNV+NW
Sbjct:    8 LPYTYDALEPNFDKETMEIHYTKHHNIYVTKLNEAVSGHAELASKPGEELVANLDSVPEEIRGAVRNHGGGHANHTLFWSSLSP---NGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVNNG--KLEIVSTANQDSPLSEGKT--PVLGLDVWEHAYYLKFQNRRPEYIDTFWNVINW 191          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_DEIRA (Superoxide dismutase [Mn] OS=Deinococcus radiodurans GN=sodA PE=1 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 2.635e-39
Identity = 93/206 (45.15%), Postives = 117/206 (56.80%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA----------VEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVH-EGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 573
            LPY Y ALEP I    M++HH KHHQ YV N NKA          VEQL Q L++V        +GA++ N GGH NHS+FW+ +     + G   P   L  AI++ FGS +A  QK         GSGW WL +     +L V +TANQD PL+ +A   V   P+LG+DVWEHAYYL Y+N +PDYL   WNV+NW   S  Y
Sbjct:    8 LPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDRVPADK----KGALRNNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVVKDG--KLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWNVVNWDEVSKRY 207          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_CHLRE (Superoxide dismutase [Mn], mitochondrial OS=Chlamydomonas reinhardtii GN=SODA PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.635e-39
Identity = 84/205 (40.98%), Postives = 121/205 (59.02%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL--FQALNKVDTSTVV-------QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTL---VPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 576
            LPYDY +LEP +    M +HH KHHQ YV N N A+++    + L  VD +  V        +   I+ NGGGH NHS FWK +       G  P+  +  AI+  FGS++ +  K +A  A   GSGW WL +  +   L +++T NQD PL+T  P +   +PLLG+DVWEHAYYL+Y+N +P+Y+   WNV+NW+  ++ Y+
Sbjct:    8 LPYDYGSLEPHVDATTMNIHHTKHHQTYVNNLNAALDKFPELKDLGLVDLNKAVGTDKLPKDVATVIRNNGGGHYNHSFFWKVMTNPSNTNG--PNGDVKAAIEASFGSVDEMKAKFNAAAAGRFGSGWAWLSVKPDGS-LSIDSTPNQDNPLMTALPDVAGGIPLLGLDVWEHAYYLKYQNRRPEYIAAWWNVVNWEQVAENYK 209          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_STRR6 (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=sodA PE=3 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.494e-39
Identity = 85/197 (43.15%), Postives = 116/197 (58.88%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 573
            LPY Y ALEP I  E M LHH KHHQ YV N N A+E+        +AL     S    ++ A+  NGGGH+NH++FW+ + P        P + L  AID  FGS E      +A      GSGW WL ++ E K L V +TANQD  +++     P+LG+DVWEHAYY++Y+NV+PDY+K  ++V+NW    ++Y
Sbjct:    8 LPYAYDALEPYIDAETMHLHHDKHHQTYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGLDVWEHAYYVKYRNVRPDYIKAFFSVINWNKVDELY 197          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_STRPN (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae GN=sodA PE=3 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.494e-39
Identity = 85/197 (43.15%), Postives = 116/197 (58.88%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 573
            LPY Y ALEP I  E M LHH KHHQ YV N N A+E+        +AL     S    ++ A+  NGGGH+NH++FW+ + P        P + L  AID  FGS E      +A      GSGW WL ++ E K L V +TANQD  +++     P+LG+DVWEHAYY++Y+NV+PDY+K  ++V+NW    ++Y
Sbjct:    8 LPYAYDALEPYIDAETMHLHHDKHHQTYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGLDVWEHAYYVKYRNVRPDYIKAFFSVINWNKVDELY 197          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_ENTFA (Superoxide dismutase [Fe] OS=Enterococcus faecalis GN=sodA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.869e-39
Identity = 84/202 (41.58%), Postives = 116/202 (57.43%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN-----------KAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 573
            LPY Y ALEP I  E M LHH KHH  YVTN N           K+VE L   +N +       ++ A++ NGGGH NH+ FW+ +AP    GG+P   ++  AID  FGS + +            GSGW WL ++    +L + +T NQD  +    T  P+LG+DVWEHAYYL+YKNV+PDY++  WNV+NW   ++++
Sbjct:    8 LPYAYDALEPYIDVETMHLHHDKHHNTYVTNLNAAIEKHPELGEKSVENLISDMNAIPED----IRTAVRNNGGGHANHTFFWEIMAP--NAGGQPT-GAIKEAIDETFGSFDEMKAAFKTAATGRFGSGWAWLVVNNG--KLEITSTPNQDSPLMDGQT--PVLGLDVWEHAYYLKYKNVRPDYIEAFWNVVNWDKVNELF 198          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_BACST (Superoxide dismutase [Mn] OS=Bacillus stearothermophilus GN=sodA PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.869e-39
Identity = 87/200 (43.50%), Postives = 113/200 (56.50%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 579
            LPY Y ALEP I  E M +HH KHH  YVTN N A+E      NK     +  L+        A++ NGGGH NHS+FW  L+P   GGGEP    L  AI+  FGS  A   + S   A   GSGW WL ++     L + +T NQD  + +  T  P+LG+DVWEHAYYL+Y+N +P+Y+   WNV+NW   +  Y +
Sbjct:    8 LPYPYDALEPHIDKETMNIHHTKHHNTYVTNLNAALEGHPDLQNKSLEELLSNLEALPESIRTAVRNNGGGHANHSLFWTILSP--NGGGEPT-GELADAINKKFGSFTAFKDEFSKAAAGRFGSGWAWLVVNNG--ELEITSTPNQDSPIMEGKT--PILGLDVWEHAYYLKYQNRRPEYIAAFWNVVNWDEVAKRYSE 200          
BLAST of DR908105 vs. ExPASy Swiss-Prot
Match: SODM_BACCA (Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.869e-39
Identity = 86/200 (43.00%), Postives = 113/200 (56.50%), Query Frame = 1
Query:    1 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 579
            LPY Y ALEP I  E M +HH KHH  YVTN N A+E      NK     +  L+        A++ NGGGH NHS+FW  L+P   GGGEP    L  AI+  FGS  A   + S   A   GSGW WL ++     L + +T NQD  + +  T  P+LG+DVWEHAYYL+Y+N +P+Y+   WN++NW   +  Y +
Sbjct:    8 LPYPYDALEPHIDKETMNIHHTKHHNTYVTNLNAALEGHPDLQNKSLEELLSNLEALPESIRTAVRNNGGGHANHSLFWTILSP--NGGGEPT-GELAEAINKKFGSFTAFKDEFSKAAAGRFGSGWAWLVVNNG--ELEITSTPNQDSPIMEGKT--PILGLDVWEHAYYLKYQNRRPEYIAAFWNIVNWDEVAKRYSE 200          
The following BLAST results are available for this feature:
BLAST of DR908105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_STAES1.545e-3942.13Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_STAEQ1.545e-3942.13Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_LISIV2.635e-3941.88Superoxide dismutase [Mn] OS=Listeria ivanovii GN=... [more]
SODM_DEIRA2.635e-3945.15Superoxide dismutase [Mn] OS=Deinococcus radiodura... [more]
SODM_CHLRE2.635e-3940.98Superoxide dismutase [Mn], mitochondrial OS=Chlamy... [more]
SODM_STRR64.494e-3943.15Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODM_STRPN4.494e-3943.15Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODM_ENTFA5.869e-3941.58Superoxide dismutase [Fe] OS=Enterococcus faecalis... [more]
SODM_BACST5.869e-3943.50Superoxide dismutase [Mn] OS=Bacillus stearothermo... [more]
SODM_BACCA5.869e-3943.00Superoxide dismutase [Mn] OS=Bacillus caldotenax G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16233 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908105 ID=DR908105; Name=DR908105; organism=Citrus sinensis; type=EST; length=722bp
CTTCCGTACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTAT
GCAGCTTCATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACA
AGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATACGTCCACC
GTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAA
CCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCG
AGCCACCACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCT
CTGGAAGCATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGG
CTCTGGATGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGG
TTGAAACTACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTG
GTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGCATACTACCTACAGTA
CAAGAATGTCAAACCAGATTATCTGAAAAACATTTGGAACGTAATGAACT
GGAAGTATGCTAGTGATGTGTATCAGAAAGAATGCCCTTAAGCTTGGAGC
TCTTCCTTGAGCATGGAGTTCTTCGTTTGATCTGGGTTCTCTCTTGGGTT
CAAGAGACGAATATCCTTGCAGCTTTTCACGCTGAAGTGACATAAAACGA
TATTTTGCAGATGATGACAGAC
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