DR908089

Overview
NameDR908089
Unique NameDR908089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908089 vs. ExPASy Swiss-Prot
Match: SYG_BORBZ (Glycyl-tRNA synthetase OS=Borrelia burgdorferi (strain ZS7) GN=glyQS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 44/135 (32.59%), Postives = 71/135 (52.59%), Query Frame = 2
Query:  335 LISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERD 727
            L++KEK       + P VIE S G+ R +      ++       GD+++ V R  P +AP K  +FPLV+  +  E+A+ I   +++    H       +IGKRY R DE+G P+ +T+D       +VT+RER+
Sbjct:  292 LLTKEK-------YVPYVIETSAGLTRSVLMTLCDAYSEEELSDGDKRI-VLRLHPKLAPYKIAIFPLVKKVELTEIARRI--YMELCDDFHIFYDDSGTIGKRYRRQDEIGTPYCVTIDYNTIEDETVTVRERN 416          
BLAST of DR908089 vs. ExPASy Swiss-Prot
Match: SYG_BORBU (Glycyl-tRNA synthetase OS=Borrelia burgdorferi GN=glyQS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 44/135 (32.59%), Postives = 71/135 (52.59%), Query Frame = 2
Query:  335 LISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERD 727
            L++KEK       + P VIE S G+ R +      ++       GD+++ V R  P +AP K  +FPLV+  +  E+A+ I   +++    H       +IGKRY R DE+G P+ +T+D       +VT+RER+
Sbjct:  292 LLTKEK-------YVPYVIETSAGLTRSVLMTLCDAYSEEELSDGDKRI-VLRLHPKLAPYKIAIFPLVKKVELTEIARRI--YMELCDDFHIFYDDSGTIGKRYRRQDEIGTPYCVTIDYNTIEDETVTVRERN 416          
BLAST of DR908089 vs. ExPASy Swiss-Prot
Match: SYG_THEFY (Glycyl-tRNA synthetase OS=Thermobifida fusca (strain YX) GN=glyQS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 45/125 (36.00%), Postives = 69/125 (55.20%), Query Frame = 2
Query:  374 FTPSVIEPSFGIGR--IIYCLYEHSFYTRPSKAGD-EQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERD 727
            F P VIEPS G+ R  + + L  ++    P+  G  E+  V R  P +AP+K  V PL +N      A+ ++  L+    + + D  G +IG+RY R DE+G PF +T+D      ++VT+RERD
Sbjct:  317 FIPYVIEPSAGVDRTMLTFLLDAYTEDEAPNAKGKMEKRVVMRLDPRLAPVKAAVLPLSRNADLSPKARDLAAKLRKRW-NVEFDDAG-AIGRRYRRQDEIGTPFCVTIDFDTLEDNAVTVRERD 439          
The following BLAST results are available for this feature:
BLAST of DR908089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
SYG_BORBZ6.869e-1132.59Glycyl-tRNA synthetase OS=Borrelia burgdorferi (st... [more]
SYG_BORBU6.869e-1132.59Glycyl-tRNA synthetase OS=Borrelia burgdorferi GN=... [more]
SYG_THEFY8.972e-1136.00Glycyl-tRNA synthetase OS=Thermobifida fusca (stra... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16217 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-32_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908089 ID=DR908089; Name=DR908089; organism=Citrus sinensis; type=EST; length=729bp
TGAGATTGAGTGTTCGTATGGGTGGATTGAATGTGTCGGCATTGCAGATA
GGTCTGCGTATGACCTGCATGCTCACACGGAGAAGAGTGGTGTCGCGCTT
GTAGCTCAGGAGAAATTTTCAGAACCTAGGGAAGTGGAGAAATTGGTAAT
TGCTCCAGTGAAGAAAGAGCTGGGTCTTGCATTCAAGGGAAGCCAAAAGA
ATGTGGTTGAAGCTTTGGAGGCTATGAATGAGAAAGAAGCTATGGAGATG
AAGGCCGCATTGGAATCGAAAGGGGAGGTGGAGTTTTATGTCTGCACTCT
GGGAAAAAATGTTTGCATTAAGAAGAACATGTTGTTAATTTCTAAGGAGA
AAAAGAAAGAACACCAGAGAGTTTTCACCCCATCAGTTATAGAGCCATCT
TTTGGCATTGGTCGAATTATATACTGCCTCTATGAGCACTCTTTCTATAC
AAGGCCAAGTAAAGCTGGGGATGAACAGTTAAATGTTTTCCGTTTCCCCC
CTCTTGTGGCACCTATTAAGTGCACTGTTTTCCCACTGGTTCAGAATCAA
CAGTATGAGGAGGTTGCCAAAGTCATTTCCACGTTATTAAAAGTTGCTGG
AATCTCTCACAAGATTGACATAACAGGCACCTCCATAGGGAAACGGTATG
CAAGAACAGATGAACTTGGTGTACCGTTTGCTATAACTGTTGATTCAACA
TCCTCGGTGACAATCCGAGAGCGAGATAG
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