DR908087 | Citrus Genome Database

Overview


Name	DR908087
Unique Name	DR908087
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	730

Libraries


Library Name	Type
Citrus sinensis phloem	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig10200	contig	Csv1_Contig10200:1884..2617.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DR908087 vs. ExPASy Swiss-Prot
Match: SUS2_DAUCA (Sucrose synthase isoform 2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 398.667 bits (1023), Expect = 1.712e-110
Identity = 190/229 (82.97%), Postives = 209/229 (91.27%), Query Frame = 1

Query:    1 ARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 687
            ARLD VKNLTG+VEWY KN KLRELVNLVVVGGDRRKESKDLEEQA+MKKMY LID YKLNGQFRWIS+Q NRVRNGELYR I DTKGAFVQPA YEAFGLTV+EAMTCGLPTFAT  GGPAEIIV+G SG+HIDPYHGE+AAE++V+FFE+CK +PS+W+ IS GGLKRI+EKYTW+IYS+RLLTL GVYGFWKHVS LDR+E RRYLEMF ALKYR LAESVPLAV+
Sbjct:  573 ARLDNVKNLTGIVEWYAKNPKLRELVNLVVVGGDRRKESKDLEEQAQMKKMYGLIDTYKLNGQFRWISAQKNRVRNGELYRCIADTKGAFVQPAFYEAFGLTVIEAMTCGLPTFATIHGGPAEIIVHGTSGFHIDPYHGEKAAELIVNFFERCKTEPSHWETISAGGLKRIQEKYTWQIYSERLLTLGGVYGFWKHVSKLDRIEIRRYLEMFCALKYRNLAESVPLAVD 801

[Close]

BLAST of DR908087 vs. ExPASy Swiss-Prot
Match: SUS1_MAIZE (Sucrose synthase 1 OS=Zea mays GN=SH-1 PE=2 SV=1)

HSP 1 Score: 388.652 bits (997), Expect = 1.772e-107
Identity = 182/229 (79.48%), Postives = 206/229 (89.96%), Query Frame = 1

Query:    1 ARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 687
            ARLDRVKN+TGLVE YGKNA+LREL NLV+V GD  KESKD EEQAE KKMYSLID+YKL G  RWIS+QMNRVRNGELYRYICDTKGAFVQPA YEAFGLTV+E+MTCGLPT ATC GGPAEIIV+G SG HIDPYH ++AA+ILV+FF+KCKADPSYWD+IS GGL+RI EKYTWK+YS+RL+TLTGVYGFWK+VSNL+R E+RRY+EMFYALKYR LA  VPL+ +
Sbjct:  574 ARLDRVKNMTGLVEMYGKNARLRELANLVIVAGDHGKESKDREEQAEFKKMYSLIDEYKLKGHIRWISAQMNRVRNGELYRYICDTKGAFVQPAFYEAFGLTVIESMTCGLPTIATCHGGPAEIIVDGVSGLHIDPYHSDKAADILVNFFDKCKADPSYWDEISQGGLQRIYEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYIEMFYALKYRSLASQVPLSFD 802

[Close]

BLAST of DR908087 vs. ExPASy Swiss-Prot
Match: SUS1_TULGE (Sucrose synthase 1 OS=Tulipa gesneriana PE=2 SV=1)

HSP 1 Score: 387.882 bits (995), Expect = 3.022e-107
Identity = 183/229 (79.91%), Postives = 208/229 (90.83%), Query Frame = 1

Query:    1 ARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 687
            ARLDRVKN+TGLVE YGKN +L+ELVNLVVV GD  KESKDLEEQAE+KKMY LI++YKL G  RWIS+QMNRVRNGELYRYI DTKGAFVQPA YEAFGLTVVE+MTCGLPTFATC GGPAEIIV+G SG+HIDPYHG++A+E LV FFEKCK DP++W+KIS GGL+RI EKYTWK+YS+RL+TL GVYGFWK+VSNLDR E+RRYLEMFYALKYR LA+SVPLA++
Sbjct:  576 ARLDRVKNMTGLVELYGKNDRLKELVNLVVVAGDHGKESKDLEEQAELKKMYKLIEEYKLQGHIRWISAQMNRVRNGELYRYIADTKGAFVQPAFYEAFGLTVVESMTCGLPTFATCHGGPAEIIVHGVSGFHIDPYHGDKASEQLVSFFEKCKEDPAHWEKISQGGLQRIYEKYTWKLYSERLMTLAGVYGFWKYVSNLDRRETRRYLEMFYALKYRNLAKSVPLAID 804

[Close]

BLAST of DR908087 vs. ExPASy Swiss-Prot
Match: SUS1_HORVU (Sucrose synthase 1 OS=Hordeum vulgare GN=SS1 PE=1 SV=1)

HSP 1 Score: 385.571 bits (989), Expect = 1.500e-106
Identity = 183/229 (79.91%), Postives = 205/229 (89.52%), Query Frame = 1

Query:    1 ARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 687
            ARLDRVKN+TGLVE YGKNA L++L NLV+V GD  KESKD EEQAE K+MYSLI++YKL G  RWIS+QMNRVRNGELYRYICDTKGAFVQPA YEAFGLTV+EAMTCGLPT ATC GGPAEIIV+G SG HIDPYH ++AA+ILV+FFEK  ADPSYWDKIS GGLKRI EKYTWK+YS+RL+TLTGVYGFWK+VSNL+R E+RRYLEMFYALKYR LA +VPLAV+
Sbjct:  573 ARLDRVKNMTGLVEMYGKNAHLKDLANLVIVAGDHGKESKDREEQAEFKRMYSLIEEYKLKGHIRWISAQMNRVRNGELYRYICDTKGAFVQPAFYEAFGLTVIEAMTCGLPTIATCHGGPAEIIVDGVSGLHIDPYHSDKAADILVNFFEKSTADPSYWDKISQGGLKRIYEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYLEMFYALKYRSLAAAVPLAVD 801

[Close]

BLAST of DR908087 vs. ExPASy Swiss-Prot
Match: SUS2_TULGE (Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1)

HSP 1 Score: 382.489 bits (981), Expect = 1.270e-105
Identity = 184/229 (80.35%), Postives = 206/229 (89.96%), Query Frame = 1

Query:    1 ARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 687
            ARLDRVKN+TGLVE Y KN +L+ELVNLVVV GD  K SKDLEEQAE+KKMYSLI++YKL+G  RWIS+QMNRVRNGELYRYI D+KG FVQPA YEAFGLTVVE+MTCGLPTFATC GGPAEIIV+G SGYHIDPYHG++AAE+LVDFFEK K D ++WD IS GGLKRI EKYTWKIYS+RLLTL GVYGFWK+VSNLDR E++RYLEMFYALKYR LA+SVPLAV+
Sbjct:  578 ARLDRVKNMTGLVELYAKNDRLKELVNLVVVCGDHAKASKDLEEQAELKKMYSLIEEYKLDGHIRWISAQMNRVRNGELYRYIADSKGVFVQPAFYEAFGLTVVESMTCGLPTFATCHGGPAEIIVHGVSGYHIDPYHGDKAAELLVDFFEKSKKDQTHWDAISNGGLKRIYEKYTWKIYSERLLTLAGVYGFWKYVSNLDRRETKRYLEMFYALKYRNLAKSVPLAVD 806

[Close]

BLAST of DR908087 vs. ExPASy Swiss-Prot
Match: SUS2_ORYSJ (Sucrose synthase 2 OS=Oryza sativa subsp. japonica GN=SUS2 PE=1 SV=2)

HSP 1 Score: 379.407 bits (973), Expect = 1.075e-104
Identity = 179/229 (78.17%), Postives = 201/229 (87.77%), Query Frame = 1

Query:    1 ARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 687
            ARLDRVKN+TGLVE YGKNA LR+L NLV+V GD   +SKD EEQAE KKMY LIDQYKL G  RWIS+QMNRVRNGELYRYICDTKG FVQPA YEAFGLTV+EAMTCGLPT ATC GGPAEIIV+G SG HIDPYH ++AA+ILV+FFEKCK D +YWD IS GGL+RI EKYTWK+YS+RL+TLTGVYGFWK+VSNL+R E+RRY+EMFYALKYR LA +VPLAV+
Sbjct:  574 ARLDRVKNMTGLVEMYGKNAHLRDLANLVIVCGDHGNQSKDREEQAEFKKMYGLIDQYKLKGHIRWISAQMNRVRNGELYRYICDTKGVFVQPAFYEAFGLTVIEAMTCGLPTIATCHGGPAEIIVDGVSGLHIDPYHSDKAADILVNFFEKCKQDSTYWDNISQGGLQRIYEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYIEMFYALKYRSLASAVPLAVD 802

[Close]

BLAST of DR908087 vs. ExPASy Swiss-Prot
Match: SUS2_MAIZE (Sucrose synthase 2 OS=Zea mays GN=SUS1 PE=1 SV=1)

HSP 1 Score: 377.867 bits (969), Expect = 3.128e-104
Identity = 180/229 (78.60%), Postives = 204/229 (89.08%), Query Frame = 1

Query:    1 ARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 687
            ARLDRVKNLTGLVE YG+N +L+ELVNLVVV GD    SKD EEQAE KKM+ LI+QY LNG  RWIS+QMNRVRNGELYRYICDTKGAFVQPA YEAFGLTVVEAMTCGLPTFAT  GGPAEIIV+G SGYHIDPY G++A+ +LVDFF+KC+A+PS+W KIS GGL+RIEEKYTWK+YS+RL+TLTGVYGFWK+VSNL+R E+RRYLEM YALKYR +A +VPLAVE
Sbjct:  582 ARLDRVKNLTGLVELYGRNKRLQELVNLVVVCGDHGNPSKDKEEQAEFKKMFDLIEQYNLNGHIRWISAQMNRVRNGELYRYICDTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATAYGGPAEIIVHGVSGYHIDPYQGDKASALLVDFFDKCQAEPSHWSKISQGGLQRIEEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYLEMLYALKYRTMASTVPLAVE 810

[Close]

BLAST of DR908087 vs. ExPASy Swiss-Prot
Match: SUS1_ORYSJ (Sucrose synthase 1 OS=Oryza sativa subsp. japonica GN=SUS1 PE=1 SV=1)

HSP 1 Score: 375.941 bits (964), Expect = 1.188e-103
Identity = 179/229 (78.17%), Postives = 203/229 (88.65%), Query Frame = 1

Query:    1 ARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 687
            ARLDRVKNLTGLVE YG+N +L+ELVNLVVV GD    SKD EEQAE KKM+ LI+QY LNG  RWIS+QMNRVRNGELYRYICDTKGAFVQPA YEAFGLTVVE+MTCGLPTFAT  GGPAEIIVNG SG+HIDPY G++A+ +LV+FFEKC+ DPS+W KIS GGL+RIEEKYTWK+YS+RL+TLTGVYGFWK+VSNL+R E+RRYLEM YALKYR +A +VPLAVE
Sbjct:  582 ARLDRVKNLTGLVELYGRNPRLQELVNLVVVCGDHGNPSKDKEEQAEFKKMFDLIEQYNLNGHIRWISAQMNRVRNGELYRYICDTKGAFVQPAFYEAFGLTVVESMTCGLPTFATAYGGPAEIIVNGVSGFHIDPYQGDKASALLVEFFEKCQEDPSHWTKISQGGLQRIEEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYLEMLYALKYRTMASTVPLAVE 810

[Close]

BLAST of DR908087 vs. ExPASy Swiss-Prot
Match: SUS3_ORYSJ (Sucrose synthase 3 OS=Oryza sativa subsp. japonica GN=SUS3 PE=1 SV=2)

HSP 1 Score: 373.244 bits (957), Expect = 7.704e-103
Identity = 176/229 (76.86%), Postives = 205/229 (89.52%), Query Frame = 1

Query:    1 ARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 687
            ARLD VKNLTGLVE YG+N +L+ELVNLVVV GD  KESKD EEQAE KKM++LI+QY LNG  RWIS+QMNRVRNGELYRYICD +GAFVQPALYEAFGLTV+EAMTCGLPTFAT  GGPAEIIV+G SGYHIDPY  ++A+ +LV+FFEKC+ DP++W KIS GGL+RIEEKYTWK+YS+RL+TL+GVYGFWK+V+NLDR E+RRYLEM YALKYRK+A +VPLA+E
Sbjct:  582 ARLDHVKNLTGLVELYGRNPRLQELVNLVVVCGDHGKESKDKEEQAEFKKMFNLIEQYNLNGHIRWISAQMNRVRNGELYRYICDMRGAFVQPALYEAFGLTVIEAMTCGLPTFATAYGGPAEIIVHGVSGYHIDPYQNDKASALLVEFFEKCQEDPNHWIKISQGGLQRIEEKYTWKLYSERLMTLSGVYGFWKYVTNLDRRETRRYLEMLYALKYRKMATTVPLAIE 810

[Close]

BLAST of DR908087 vs. ExPASy Swiss-Prot
Match: SUS2_HORVU (Sucrose synthase 2 OS=Hordeum vulgare GN=SS2 PE=1 SV=1)

HSP 1 Score: 368.622 bits (945), Expect = 1.897e-101
Identity = 175/229 (76.42%), Postives = 201/229 (87.77%), Query Frame = 1

Query:    1 ARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 687
            ARLDRVKN+TGLVE YG+N +L+ELVNLVVV GD  K SKD EEQ E KKM+ LI++Y L+G  RWIS+QMNRVRNGELYRYICD KGAFVQPA YEAFGLTV+EAMTCGLPTFAT  GGPAEIIVNG SGYHIDPY  ++A+ +LV FF KC+ DPS+W+KIS GGL+RIEEKYTWK+YS+RL+TL+GVYGFWK+VSNLDR E+RRYLEM YALKYRK+A +VPLAVE
Sbjct:  582 ARLDRVKNMTGLVEMYGRNPRLQELVNLVVVCGDHGKVSKDKEEQVEFKKMFDLIEKYNLSGHIRWISAQMNRVRNGELYRYICDMKGAFVQPAFYEAFGLTVIEAMTCGLPTFATAYGGPAEIIVNGVSGYHIDPYQNDKASALLVGFFGKCQEDPSHWNKISQGGLQRIEEKYTWKLYSERLMTLSGVYGFWKYVSNLDRRETRRYLEMLYALKYRKMAATVPLAVE 810

The following BLAST results are available for this feature:

BLAST of DR908087 vs. ExPASy Swiss-Prot

BLAST of DR908087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34


Match Name	E-value	Identity	Description
SUS2_DAUCA	1.712e-110	82.97	Sucrose synthase isoform 2 OS=Daucus carota PE=2 S...	[more]
SUS1_MAIZE	1.772e-107	79.48	Sucrose synthase 1 OS=Zea mays GN=SH-1 PE=2 SV=1	[more]
SUS1_TULGE	3.022e-107	79.91	Sucrose synthase 1 OS=Tulipa gesneriana PE=2 SV=1	[more]
SUS1_HORVU	1.500e-106	79.91	Sucrose synthase 1 OS=Hordeum vulgare GN=SS1 PE=1 ...	[more]
SUS2_TULGE	1.270e-105	80.35	Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1	[more]
SUS2_ORYSJ	1.075e-104	78.17	Sucrose synthase 2 OS=Oryza sativa subsp. japonica...	[more]
SUS2_MAIZE	3.128e-104	78.60	Sucrose synthase 2 OS=Zea mays GN=SUS1 PE=1 SV=1	[more]
SUS1_ORYSJ	1.188e-103	78.17	Sucrose synthase 1 OS=Oryza sativa subsp. japonica...	[more]
SUS3_ORYSJ	7.704e-103	76.86	Sucrose synthase 3 OS=Oryza sativa subsp. japonica...	[more]
SUS2_HORVU	1.897e-101	76.42	Sucrose synthase 2 OS=Hordeum vulgare GN=SS2 PE=1 ...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_16215 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_B10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR908087 ID=DR908087; Name=DR908087; organism=Citrus sinensis; type=EST; length=730bp
GCAAGATTGGACCGTGTAAAGAATTTGACTGGGCTTGTGGAGTGGTATGG
AAAGAATGCTAAGCTACGTGAGTTGGTGAACTTAGTCGTAGTGGGTGGTG
ATAGGAGAAAGGAGTCCAAGGACTTGGAAGAACAGGCTGAAATGAAGAAG
ATGTATTCCCTCATTGATCAATACAAATTGAATGGCCAGTTCCGATGGAT
CTCTTCTCAGATGAATCGGGTCAGGAACGGTGAATTGTACCGGTACATTT
GTGATACAAAGGGAGCTTTTGTGCAACCTGCACTGTATGAGGCCTTTGGC
TTGACTGTTGTTGAGGCCATGACCTGTGGATTGCCAACATTTGCAACTTG
CAAGGGTGGCCCCGCTGAGATTATCGTTAACGGGAAATCTGGCTACCACA
TTGATCCTTACCATGGTGAGCAGGCTGCTGAGATCCTTGTTGACTTCTTT
GAGAAGTGCAAGGCAGATCCCTCATACTGGGACAAGATATCACTGGGTGG
CCTGAAGCGTATTGAAGAGAAGTATACATGGAAAATTTACTCTCAGAGGC
TTCTGACCCTGACTGGAGTCTATGGGTTCTGGAAACATGTATCTAACCTT
GATCGGCTTGAGAGCCGTCGATACCTTGAAATGTTTTATGCTCTCAAGTA
CCGTAAGCTGGCTGAATCTGTTCCTCTGGCTGTGGAGTAAATGGACATTG
AGGAAGCTCTCAGGGTGGTTGGTCCGAGTG