EY680102

Overview
NameEY680102
Unique NameEY680102
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY680102 vs. ExPASy Swiss-Prot
Match: COBL5_ORYSI (COBRA-like protein 5 OS=Oryza sativa subsp. indica GN=BC1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.461e-18
Identity = 52/114 (45.61%), Postives = 61/114 (53.51%), Query Frame = 3 
Query:    3 AKVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTE-SGSCIKNALP----EINNSSSTGSRD*AVCCXXXXXXRYQCAGV 329
            A +   T ++T D+RR TQA+MTW VTCTYSQ LA + PTCCVS SSF N T V C  CACGC ++G   +G   KNA         NS   G       C      R   AGV
Sbjct:  179 ATIVPSTVYLTPDRRRRTQALMTWTVTCTYSQQLASRYPTCCVSFSSFYNSTIVPCARCACGCGHDGYRGNGGGGKNARAGDGRSRRNSGGGGGHSGGTECIMGDSKRALSAGV 292
[Close]
BLAST of EY680102 vs. ExPASy Swiss-Prot
Match: COBL6_ARATH (COBRA-like protein 6 OS=Arabidopsis thaliana GN=COBL6 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.721e-15
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 3 
Query:   18 PTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCIKN 230
            PTKF T   RR TQA+ TW   C YSQF +  +P CCVSLS+F  +  V CPTC+CGC      S  C+K+
Sbjct:  197 PTKFSTDKGRRKTQALATWEAVCVYSQFRSSPSPKCCVSLSAFYYQNIVPCPTCSCGC-----SSSHCVKD 262
[Close]
BLAST of EY680102 vs. ExPASy Swiss-Prot
Match: COBL7_ORYSJ (COBRA-like protein 7 OS=Oryza sativa subsp. japonica GN=BC1LP1 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.244e-13
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 3 
Query:   66 MTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCIKNALPEI 245
            +TW VTCTYSQF+   +PTCCVSLSSF N T V CP C+CGC  + T      +   PE+
Sbjct:  204 VTWQVTCTYSQFMEAASPTCCVSLSSFYNSTIVPCPRCSCGCPRSPTAPQCISEGEKPEL 263
The following BLAST results are available for this feature:
BLAST of EY680102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COBL5_ORYSI7.461e-1845.61COBRA-like protein 5 OS=Oryza sativa subsp. indica... [more]
COBL6_ARATH7.721e-1550.70COBRA-like protein 6 OS=Arabidopsis thaliana GN=CO... [more]
COBL7_ORYSJ3.244e-1353.33COBRA-like protein 7 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-D12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680102 ID=EY680102; Name=EY680102; organism=Citrus sinensis; type=EST; length=849bp
CTGCAAAAGTTGGTAAACCAACTAAATTCATTACGTCAGATAAGAGGAGA
GTCACACAAGCTATGATGACCTGGAATGTCACATGCACATATTCACAGTT
CTTGGCTCAAAAGACACCCACCTGTTGTGTTTCTCTCTCTTCCTTCAACA
ATGAAACAACAGTAAGCTGCCCAACGTGTGCTTGTGGCTGTCAAAACAAT
GGAACAGAATCTGGGAGTTGCATAAAAAATGCATTGCCTGAAATCAACAA
CAGCAGCAGCACGGGGAGCCGGGATTGAGCCGTATGCTGCAGTAGCAGTA
GCAGTAGCAGGTATCAATGTGCTGGTGTCATACAATGAATTAGACGGAAC
CCCTCTTAATATCTCATCTTTCTCCACTGCAAGACCCTGTTATTGCCTTA
GAACCAATGTCCAAAAGTGATCCAATAGAATTTTCTCCATTAATTTTTTT
AATTTTAAAATAAAACCAATAACCTTGGCAACCAGTTCAGTGAGCCTGTT
TGGGGGAGCTTCAGCATTTAAAGGCGTCATTGTGGCTGAAGCAACAGCAT
TTGCAGCCTACAAAAAATTATCAATTTTGTTTTTCAGTGTGTGTGTGTAT
ACTAAAAATTTCGATAAAAGGAAAACAAGGGGGTTGCCTGAAAAAATAAA
TTGTTTAAAATTAAGTAAATTTGGATTTTATAAACAATTATTACTTTAAC
AACTGTTTATTAAAAAAAAAAAAAAAAAGGGGGGCCCCTCCAAAAAAAAC
AAAGCTTACTTACACCTGCCATGCAAATTCCAAACTATTATAAAATTGTA
CCCCTAAAATTTAATCACCGAGGGCGCCCTTTTTAAAAACCATAAAGAA
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