DR405870

Overview
NameDR405870
Unique NameDR405870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7102 contig Csv1_Contig7102:124..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 6.860e-20
Identity = 51/136 (37.50%), Postives = 74/136 (54.41%), Query Frame = 3
Query:  258 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQ-SYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATXEAXXADLLSHPE 662
            F+     RN     A GF+ Y +F+ A   Y    F TTG      +E+ AFLA    +T+ G+  A  GP +WG C+  E + +  +YC+   K  +PC  G +YYGRG I I +NYNYG   +A  +DLL++P+
Sbjct:   85 FDQMLLHRNDQACAAKGFYTYDAFVAAANAYPD--FATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEP--KPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAIGSDLLNNPD 216          
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.996e-19
Identity = 49/137 (35.77%), Postives = 73/137 (53.28%), Query Frame = 3
Query:  258 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPS--QSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATXEAXXADLLSHPE 662
            F+     RN     A  F+ Y +F+ A   +    F TTG    + +E+ AFLA    +T+ G+  A  GP +WG C+  E + +    YC  S ++  PC  G +YYGRG I I +NYNYG   +A  ++LLS+P+
Sbjct:   88 FDQMLLHRNDAACPAKNFYTYDAFVAAANAFP--SFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQW--PCAAGKKYYGRGPIQISYNYNYGPAGQAIGSNLLSNPD 220          
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.905e-19
Identity = 50/136 (36.76%), Postives = 69/136 (50.74%), Query Frame = 3
Query:  255 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATXEAXXADLLSHPE 662
            QFE     R+     A GF+ Y++F+ A   +    F  TG    + +E+ AFLA     TS       GGP +WG CY      +  +C  + ++  PC PG  Y+ RG + I +NYNYGA  EA  ADLL +PE
Sbjct:  105 QFERMLPHRDDAACPARGFYAYRAFVAAAGAFP--AFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARW--PCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPE 229          
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.905e-19
Identity = 50/136 (36.76%), Postives = 69/136 (50.74%), Query Frame = 3
Query:  255 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATXEAXXADLLSHPE 662
            QFE     R+     A GF+ Y++F+ A   +    F  TG    + +E+ AFLA     TS       GGP +WG CY      +  +C  + ++  PC PG  Y+ RG + I +NYNYGA  EA  ADLL +PE
Sbjct:  105 QFERMLPHRDDAACPARGFYAYRAFVAAAGAFP--AFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARW--PCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPE 229          
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18
Identity = 50/138 (36.23%), Postives = 69/138 (50.00%), Query Frame = 3
Query:  258 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMK-EICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEM--SPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATXEAXXADLLSHPE 662
            F+     RN     A  F+ Y +F+ A   +   GF   G   D  K E+ AFLA    +T+ G+  A  GP AWG C+  E   +    YC  S ++  PC  G +YYGRG I + +N+NYG   +A  ADLL  P+
Sbjct:   90 FDQMLLHRNDAACPASNFYTYDAFVAAASAFP--GFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQW--PCAAGKKYYGRGPIQLSYNFNYGPAGQAIGADLLGDPD 223          
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 5.625e-14
Identity = 46/136 (33.82%), Postives = 70/136 (51.47%), Query Frame = 3
Query:  258 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQS-YCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATXEAXXADLLSHPE 662
            F+  FS R      + GF+ Y SF+ A   +    FGT G    + +E+ AFLAH+   TS G       P AWGLC+ +  + +++ +C  S    +PC  G +Y  RG I +  N+NYG   +A   DL+ +P+
Sbjct:  139 FDQMFSHRKD--CPSQGFYSYHSFLVAAESFP--AFGTIGDVATRKREVAAFLAHISQATS-GERSDVENPHAWGLCHINTTTVTENDFCTSS---DWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPD 266          
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.761e-13
Identity = 45/119 (37.82%), Postives = 59/119 (49.58%), Query Frame = 3
Query:  309 FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATXEAXXADLLSHPE 662
            F+  QSF+ A   Y   GF    T  D  +EI AF AHV  +T               +CY +E++  S  YCD + K  +PC PG +YYGRG + I WNYNYG   +    D L  P+
Sbjct:  112 FYTRQSFLNAAHSYS--GFARDRTNDDSKREIAAFFAHVTHETG-------------HMCYINEINGASMDYCDKNNKQ-WPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPD 214          
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.219e-13
Identity = 44/122 (36.07%), Postives = 61/122 (50.00%), Query Frame = 3
Query:  300 AVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATXEAXXADLLSHPE 662
            A GF+   +F+TA   Y    FG TG+  D  +EI AF AH   +T                CY  E+  PS++YCD++    +PC  G  YYGRG + I WN+NYG   ++   D L  P+
Sbjct:   90 AKGFYTRDAFLTAAGGYP--SFGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDET-STQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPD 195          
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.385e-12
Identity = 44/119 (36.97%), Postives = 59/119 (49.58%), Query Frame = 3
Query:  309 FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATXEAXXADLLSHPE 662
            F+  QSF+ A   Y   GF    T  D  +EI AF AHV  +T               +CY +E++  +  YCD S K  +PC PG +YYGRG + I WN+NYG   +    D L  P+
Sbjct:  109 FYTRQSFLNAARSYS--GFANDRTNDDSKREIAAFFAHVTHETG-------------HMCYINEINGANMDYCDKSNKQ-WPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPD 211          
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 41/117 (35.04%), Postives = 57/117 (48.72%), Query Frame = 3
Query:  309 FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATXEAXXADLLSHP 659
            F+   +F++A   Y   GF   G+++   +EI AF AH   +T                CY  E++ S +YCD + K  +PC  G +YYGRG + I WNYNYG    A   D L  P
Sbjct:   94 FYTRSAFLSAVKGYP--GFAHGGSQVQGKREIAAFFAHATHETG-------------HFCYISEINKSNAYCDPT-KRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDP 194          
The following BLAST results are available for this feature:
BLAST of DR405870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CHI3_ORYSJ6.860e-2037.50Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_ORYSJ1.996e-1935.77Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSJ9.905e-1936.76Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI9.905e-1936.76Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI12_ORYSJ2.207e-1836.23Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
AGI_URTDI5.625e-1433.82Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI5_ORYSJ4.761e-1337.82Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI6_ORYSJ6.219e-1336.07Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ1.385e-1236.97Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_MAIZE4.031e-1235.04Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247P24 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247P24 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405870 ID=DR405870; Name=DR405870; organism=Citrus sinensis; type=EST; length=667bp
GGGAAGTGAATCTCGTAACAACAGGTAGATCTGGTGAGAACGAGAAAATA
AAGATGAAGAATGGCAGTGTGGCAATGACACTGACAGTGGCACTAGTACT
GGCACTGGCAGTGAGTTTGGCAAATGGAGATGAATCAGAGAAGGTGATAG
TGAAGAAGGTGAAGGGGAAAAAAGTTTGCATAAAAGGGTGGGAGTGCCCA
ACATGGTCGAAATTCTGCTGTAACGAGACGATATCAGACTATTTCCAGGT
TTACCAGTTTGAGAATTTCTTCTCGAAAAGGAACACGCCGGTGGCACATG
CCGTGGGCTTCTGGGATTATCAGTCTTTCATTACTGCCACCGTCAAATAT
CAGCCCCTCGGCTTCGGTACCACCGGTACTAAGCTTGATAAGATGAAGGA
GATTTGCGCTTTTCTTGCCCACGTCGGCTGCAAGACCTCTTGTGGATATG
GGGTGGCCACTGGAGGACCATTGGCCTGGGGACTTTGCTACAACCATGAA
ATGAGCCCCAGTCAGTCATATTGTGATGATTCCTACAAATACACATATCC
CTGCACCCCTGGAGCTGAGTACTACGGCCGAGGTGCTATACCTATATACT
GGAACTATAACTATGGAGCTACTNNGGAAGCATTNNGGGCGGATCTGTTG
AGTCATCCTGAATACAT
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