DR405870

Overview
NameDR405870
Unique NameDR405870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.264e-12
Identity = 39/103 (37.86%), Postives = 55/103 (53.40%), Query Frame = 3
Query:  309 FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYG 617
            F+   +F++A   Y   GF   GT+++  +EI AF AHV  +T                CY  E++ S +YCD S +  +PC  G +YYGRG + I WNYNYG
Sbjct:  105 FYTRSAFLSAVNAYP--GFAHGGTEVEGKREIAAFFAHVTHETG-------------HFCYISEINKSNAYCDASNRQ-WPCAAGQKYYGRGPLQISWNYNYG 191          
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.000e-11
Identity = 36/102 (35.29%), Postives = 48/102 (47.06%), Query Frame = 3
Query:  363 FGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPS--QSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATXEAXXADLLSHPE 662
            FG  G+  D  +EI AF AH+  +T+              LC+  E       +YCD      YPC  G +YYGRG + + WNYNY    +A   D L +PE
Sbjct:  126 FGNEGSSDDNKREIAAFFAHISHETT-------------NLCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPE 214          
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.613e-11
Identity = 42/135 (31.11%), Postives = 61/135 (45.19%), Query Frame = 3
Query:  258 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATXEAXXADLLSHPE 662
            FE+  S R         F+ Y +FI A   +    FGTTG    + +E+ AF      +T+ G+  A  GP AWG C  +E++PS                   YYGRG I +   YNY    +A   DL+++P+
Sbjct:   36 FESMLSHRGDQGCQGA-FYTYDAFIKAAGDFPR--FGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSD----------------PPYYGRGPIQLTHKYNYQLAGDALGLDLVNNPD 151          
BLAST of DR405870 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 41/119 (34.45%), Postives = 58/119 (48.74%), Query Frame = 3
Query:  309 FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSP-SQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATXEAXXADLLSHPE 662
            F+   +F+ A   Y   GFGT  T  D+ +EI A+ AHV  +T               LCY  E    + +YC +S +Y  PC P  EY+GRG + + WNYNY    +    D L+ P+
Sbjct:   71 FYTRSNFLEAVSAYP--GFGTKCTDEDRKREIAAYFAHVTHETG-------------HLCYIEERDGHANNYCQESQQY--PCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPD 172          
The following BLAST results are available for this feature:
BLAST of DR405870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CHIA_MAIZE5.264e-1237.86Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIP_BETVU2.000e-1135.29Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI11_ORYSJ2.613e-1131.11Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_DIOJA9.928e-1134.45Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247P24 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247P24 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405870 ID=DR405870; Name=DR405870; organism=Citrus sinensis; type=EST; length=667bp
GGGAAGTGAATCTCGTAACAACAGGTAGATCTGGTGAGAACGAGAAAATA
AAGATGAAGAATGGCAGTGTGGCAATGACACTGACAGTGGCACTAGTACT
GGCACTGGCAGTGAGTTTGGCAAATGGAGATGAATCAGAGAAGGTGATAG
TGAAGAAGGTGAAGGGGAAAAAAGTTTGCATAAAAGGGTGGGAGTGCCCA
ACATGGTCGAAATTCTGCTGTAACGAGACGATATCAGACTATTTCCAGGT
TTACCAGTTTGAGAATTTCTTCTCGAAAAGGAACACGCCGGTGGCACATG
CCGTGGGCTTCTGGGATTATCAGTCTTTCATTACTGCCACCGTCAAATAT
CAGCCCCTCGGCTTCGGTACCACCGGTACTAAGCTTGATAAGATGAAGGA
GATTTGCGCTTTTCTTGCCCACGTCGGCTGCAAGACCTCTTGTGGATATG
GGGTGGCCACTGGAGGACCATTGGCCTGGGGACTTTGCTACAACCATGAA
ATGAGCCCCAGTCAGTCATATTGTGATGATTCCTACAAATACACATATCC
CTGCACCCCTGGAGCTGAGTACTACGGCCGAGGTGCTATACCTATATACT
GGAACTATAACTATGGAGCTACTNNGGAAGCATTNNGGGCGGATCTGTTG
AGTCATCCTGAATACAT
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