DR405869

Overview
NameDR405869
Unique NameDR405869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405869 vs. ExPASy Swiss-Prot
Match: IDI_VIBF1 (Isopentenyl-diphosphate Delta-isomerase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=idi PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 49/135 (36.30%), Postives = 66/135 (48.89%), Query Frame = 3
Query:  297 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYL 692
            +LV+E    +G   K   H  EK     LLH AFSV L+       E LLQ+R+  K      W+NTCCSHP   E+         V  A  R+L +E+GI    V  ++F  LG  +Y+A  +    EHE DY+
Sbjct:    6 VLVNEQGDAIGTMEKLEAH--EK----GLLHLAFSVLLYRETDLGKEFLLQKRAECKYHSKNKWSNTCCSHPRVNEN---------VEVAGTRRLNEEIGITG--VLPEQFVNLGWFIYQAELENGLSEHEQDYI 123          
BLAST of DR405869 vs. ExPASy Swiss-Prot
Match: IDI_STRCO (Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces coelicolor GN=idi PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 40/97 (41.24%), Postives = 52/97 (53.61%), Query Frame = 3
Query:  300 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI 590
            LVDEN   +G   K + H     +    LHRAFSVFLF+ +  LL+QQR+  K   P VW+NTCC HP   E+            AA R+  +ELG+
Sbjct:   24 LVDENGVTIGTAEKLSAH-----QPPGRLHRAFSVFLFDERGRLLIQQRALGKYHSPGVWSNTCCGHPYPGEAPFA---------AAARRTFEELGV 106          
BLAST of DR405869 vs. ExPASy Swiss-Prot
Match: IDI_SACEN (Isopentenyl-diphosphate Delta-isomerase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=idi PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 42/132 (31.82%), Postives = 71/132 (53.79%), Query Frame = 3
Query:  288 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHEL 683
            ++ +L++++ + +G  +K   H ++       LH AFS ++FN + +LLL QR+  K T+P VWTNTCC HP  +E+         +  A  R+L +ELG+   D+ +     L R  Y+A       E+E+
Sbjct:    2 EQVVLLNDSGQAIGVTDKATVHHLD-----TPLHLAFSCYVFNGRGQLLLTQRAHEKRTWPGVWTNTCCGHPAPQEA---------MPEAITRRLGEELGLTVRDLTL----VLPRFRYRAVMGNGVVENEI 115          
The following BLAST results are available for this feature:
BLAST of DR405869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
IDI_VIBF14.828e-1136.30Isopentenyl-diphosphate Delta-isomerase OS=Vibrio ... [more]
IDI_STRCO4.828e-1141.24Isopentenyl-diphosphate Delta-isomerase OS=Strepto... [more]
IDI_SACEN4.828e-1131.82Isopentenyl-diphosphate Delta-isomerase OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247P23 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247P23 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405869 ID=DR405869; Name=DR405869; organism=Citrus sinensis; type=EST; length=692bp
GGGGTTGCCATATTGAGGTCCCAATGTCTACTACTACGCTTTATAACTGC
GCCACAACCAAACTCTGCTCCTCACTAATCAACAACTCTTCTTCTTTCTC
GAAGTCCCGTCTATTTTTCTCCTCTTCCCATTTCGCCCCTAGGGTTTCTT
CGATTCGCAGGCCTCTGTCCTTGGGAGGTGCCTCTCGTTCTAGCTCTTCT
TCTTCTTCCGCTCGCGCAATCAGCACTATGGGTGACGCTACTACTGATGC
CGGCATGGACGCTGTCCAGCGCCGCCTCATGTTTGAAGACGAATGCATTT
TGGTGGATGAGAATGATCGCGTTGTTGGTCATGAAAACAAATACAACTGT
CACTTGATGGAAAAGATTGAGTCTTTGAATTTGCTACACAGAGCCTTCAG
CGTATTTTTGTTTAACTCAAAATATGAGCTACTCCTTCAGCAACGCTCTG
GAACCAAAGTTACCTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCAT
CCTCTGTACCGTGAATCTGAGCTTATTGAGGAGAACGCTCTTGGGGTGAG
GAATGCTGCACAAAGAAAGCTTTTGGATGAGCTGGGCATTTGTGCTGAAG
ATGTGCCAGTTGATGAGTTCACTCCACTGGGTCGCATTCTGTACAAGGCC
CCTTCTGATGGCAAGTGGGGGGAGCATGAACTTGACTACTTA
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