DR405868

Overview
NameDR405868
Unique NameDR405868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR405868_ssr52 microsatellite DR405868_ssr52:52..71. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8025 contig Csv1_Contig8025:1..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405868 vs. ExPASy Swiss-Prot
Match: RS4_SULIA (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.27) GN=rps4p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.051e-23
Identity = 60/160 (37.50%), Postives = 93/160 (58.13%), Query Frame = 3
Query:  132 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 611
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of DR405868 vs. ExPASy Swiss-Prot
Match: RS4_KORCO (30S ribosomal protein S4P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.373e-23
Identity = 58/152 (38.16%), Postives = 93/152 (61.18%), Query Frame = 3
Query:  120 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIE 575
            R + K +++P +P+++  L+   RL G YGLR KRELWR+ +   + R  AR LL   +    ++   E +++++   G L +    LD +L L+VE FLERRLQT+V++ G AKS + AR LI   HIRV  + +  PS++V+++ +  IE
Sbjct:    5 RKHRKKYERPYKPWDRRVLEETNRLAGYYGLRNKRELWRMSFLAKKYRRIARQLLAAPKSESWKV---EPIIKKLQALGILSKDAT-LDDLLDLSVEQFLERRLQTIVWRKGFAKSPYMARQLITHGHIRVNGRRIRQPSYLVKIEEEDKIE 152          
BLAST of DR405868 vs. ExPASy Swiss-Prot
Match: RS4_THEVO (30S ribosomal protein S4P OS=Thermoplasma volcanium GN=rps4p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.793e-23
Identity = 64/157 (40.76%), Postives = 94/157 (59.87%), Query Frame = 3
Query:  132 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDL---LTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 593
            K +  PR P+EK+R+D E +++ +YGL+ KRE+WR +  LS IR+ AR L   L   + N ++  + E +++R+ RY  L +    LD VL+LTVEN L+RRLQT+VFK  +A S   AR LI   HI V  + V +P  +V    +  I +   SP
Sbjct:    9 KKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLRASDANAQK--QLERMIKRLSRYKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITVNGRRVTVPGMLVEAQYEDTIAYYENSP 162          
BLAST of DR405868 vs. ExPASy Swiss-Prot
Match: RS4_METHJ (30S ribosomal protein S4P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.793e-23
Identity = 63/157 (40.13%), Postives = 94/157 (59.87%), Query Frame = 3
Query:  132 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 593
            K ++ P+RP+E  R++ E RLV EYGLR KRE+W  + AL + R AAR+++ L     +  R   + + L+  + R G L E+ + +D VLAL VE  L+RRLQT V++ G A+S   AR  I   HI +G + V IP + V    Q+ I ++ +SP
Sbjct:    9 KQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQSTGSEQARVERKKDELIGSLQRSGMLSENAD-IDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIAIGGRRVTIPGYTVSAKEQEEISYAGSSP 164          
BLAST of DR405868 vs. ExPASy Swiss-Prot
Match: RS4_PYRKO (30S ribosomal protein S4P OS=Pyrococcus kodakaraensis GN=rps4p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.216e-23
Identity = 66/164 (40.24%), Postives = 95/164 (57.93%), Query Frame = 3
Query:  132 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGRV 620
            K ++ P  P+ KERLD E  L   Y L+ K+ELWR +  L   R  AR LL    K      E + LL+R++R G L  +   LD VL+LTVE+ LERRLQT+V++ G+A+++  AR LI   HI V  Q++  P ++V  + +  I ++  SPF   G P R+
Sbjct:    9 KKYETPSHPWIKERLDRERVLKRNYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLYRLGLLP-ADAVLDDVLSLTVEDVLERRLQTIVYRKGLARTMKQARQLIVHGHIEVNGQVIRSPGYLVLREEEDTITYAKGSPFAKEGHPERM 169          
BLAST of DR405868 vs. ExPASy Swiss-Prot
Match: RS4_METBF (30S ribosomal protein S4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.898e-23
Identity = 59/160 (36.88%), Postives = 92/160 (57.50%), Query Frame = 3
Query:  132 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 593
            K+F+ PR P+++ R+ +E++LV  YGLR KRE+W+    L   R+ AR LL     +  R  EG      E +L ++ RYG ++ S   +D +L+L  EN LERRLQT V + G+A+++  AR  I   HI +  +   +P  +V  + + HI +  TSP
Sbjct:    9 KSFETPRHPWQEARMASEVQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAANSQERGLEGHQKTQSEEILAKLIRYGIIK-SDADIDDILSLKTENILERRLQTQVLRLGLARTVVQARQFITHGHIAINGRKATVPGMLVSKEDEMHIGYYATSP 167          
BLAST of DR405868 vs. ExPASy Swiss-Prot
Match: RS4_PYRAE (30S ribosomal protein S4P OS=Pyrobaculum aerophilum GN=rps4p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.518e-22
Identity = 59/137 (43.07%), Postives = 86/137 (62.77%), Query Frame = 3
Query:  144 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 548
            KP++ + K+ L  EL+L+GEYGLR K+ELW  +  L  I   AR LL  T +E+ P  +        ++++ GF+E+   +LD +L+L V   LERRLQT+V++ G+AKSIHHAR LI   H+ V  + V  P F+V
Sbjct:   15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPGFLV 147          
BLAST of DR405868 vs. ExPASy Swiss-Prot
Match: RS4_PYRCJ (30S ribosomal protein S4P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.982e-22
Identity = 60/137 (43.80%), Postives = 85/137 (62.04%), Query Frame = 3
Query:  144 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 548
            KP++ + K+ L  EL+L+GEYGLR K+ELW  +  L  I   AR LL  T +E+ P  +        ++++ GF+E+    LD +L+L V   LERRLQTLVF+ G+AKSIHHAR L+   H+ V  + V  P F+V
Sbjct:   15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWIVRRARALLSMTAEERAPLEV----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTLVFRMGLAKSIHHARQLVVHGHVLVAGRRVTSPGFLV 147          
BLAST of DR405868 vs. ExPASy Swiss-Prot
Match: RS4_CALMQ (30S ribosomal protein S4P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.589e-22
Identity = 67/152 (44.08%), Postives = 91/152 (59.87%), Query Frame = 3
Query:  144 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLR---RMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 590
            KP+R +  + L +ELRL+GEYGLR K+ELW  +  L  I++ AR++L+     P  I  GEA  R   R+ R G + +    LD VLAL V   LERRLQTLV++ GMA+SIH AR LI   HI +    V  P ++V  + +  I F+ TS
Sbjct:   15 KPKRLWNSDLLMSELRLIGEYGLRNKKELWLARALLRSIKHRAREILSA----PMEI-RGEAEKRLKDRLFRMGLISDINIPLDSVLALDVTAVLERRLQTLVYRKGMARSIHEARQLIVHGHISINGVRVRSPGYLVPRNLEDGIGFAPTS 161          
BLAST of DR405868 vs. ExPASy Swiss-Prot
Match: RS4_PYRIL (30S ribosomal protein S4P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.767e-22
Identity = 59/145 (40.69%), Postives = 89/145 (61.38%), Query Frame = 3
Query:  144 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL--DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHI 572
            KP++ + K+ L  EL+LVGEYGLR K+ELW  +  L  I   AR LL++  +E+ P  +        ++++ GF+E+    LD +L+L V   LERRLQT+V++ G+AKSI+HAR L+   H+ V  + V  P F+V  D +  I
Sbjct:   15 KPKKIWNKQLLLEELQLVGEYGLRNKKELWLARAHLKWIVRRARSLLSMTPEERAPLEL----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTIVYRKGLAKSIYHARQLVVHGHVAVAGRRVTSPGFLVPRDLEDKI 155          
The following BLAST results are available for this feature:
BLAST of DR405868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_SULIA1.051e-2337.5030S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_KORCO1.373e-2338.1630S ribosomal protein S4P OS=Korarchaeum cryptofil... [more]
RS4_THEVO1.793e-2340.7630S ribosomal protein S4P OS=Thermoplasma volcaniu... [more]
RS4_METHJ1.793e-2340.1330S ribosomal protein S4P OS=Methanospirillum hung... [more]
RS4_PYRKO5.216e-2340.2430S ribosomal protein S4P OS=Pyrococcus kodakaraen... [more]
RS4_METBF8.898e-2336.8830S ribosomal protein S4P OS=Methanosarcina barker... [more]
RS4_PYRAE1.518e-2243.0730S ribosomal protein S4P OS=Pyrobaculum aerophilu... [more]
RS4_PYRCJ1.982e-2243.8030S ribosomal protein S4P OS=Pyrobaculum calidifon... [more]
RS4_CALMQ2.589e-2244.0830S ribosomal protein S4P OS=Caldivirga maquilinge... [more]
RS4_PYRIL5.767e-2240.6930S ribosomal protein S4P OS=Pyrobaculum islandicu... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247P20 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247P20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405868 ID=DR405868; Name=DR405868; organism=Citrus sinensis; type=EST; length=675bp
GGGGAGACACGGCCTCTTCACGCCATTTGCTTAGGCTTTTACAAAGATCG
CAGAGAGAGAGAGAGAGAGAGTGAGGGTAGCACCAGCGGCGCGCAAAGAT
GGTGCACGTTTCATTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAA
GACGTCCCTATGAGAAGGAGCGATTGGATGCTGAGTTGAGGCTTGTGGGA
GAGTATGGGCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAATATGCATT
GAGCCGCATCCGAAATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGA
ACCCACGTCGTATTTTCGAGGGTGAGGCCCTTCTCAGGAGGATGCACAGG
TACGGCTTCTTGGAAGAGAGCCAGAACAAGCTTGATTATGTGTTGGCCCT
CACTGTGGAGAACTTTCTTGAGCGTCGTCTCCAGACCCTTGTGTTCAAGA
GTGGCATGGCTAAGTCAATTCACCATGCTCGAGTGCTCATCAGGCAGAGG
CACATTAGGGTTGGAAGGCAGCTTGTCAACATTCCCTCATTTGTAGTGAG
GGTTGATTCCCAGAAGCACATTGAATTCTCACTCACAAGTCCATTCGGAG
GTGGGCGCCCTGGAAGAGTGAAGAGAAGGAACATCAAGGCTGCTGCCAAG
AAGGCCGCAGGTGNNNNNGGGGATG
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