DR405867

Overview
NameDR405867
Unique NameDR405867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig259 contig Csv1_Contig259:41..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_CULQU (Eukaryotic translation initiation factor 3 subunit F OS=Culex quinquefasciatus GN=eIF3-S5 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.823e-39
Identity = 91/232 (39.22%), Postives = 131/232 (56.47%), Query Frame = 3
Query:   99 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDI-LKSTSVDKLPS---------DLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVAS 764
            N+T +VHP+V+F I D Y RR   +ERVIGTLLGSV   G V++ N + VPH E +DQV  ++ Y   +   + +VNP E IVGW++TG  VT  S++IHE+Y RE  NP+HLT+DT        +KAYV V+L +   +    F  I +++   E E VG  +  K+  V   P+         DL  +     +L TL+ ++  YV+D +     PDN VGR L + + S
Sbjct:    9 NLTVRVHPVVLFQIVDAYERRNADSERVIGTLLGSV-EKGIVEVTNCFCVPHKEHADQVEAELGYASDLYDLNRRVNPSENIVGWWATGQEVTNHSSVIHEYYARECNNPIHLTLDTSLTAARMGIKAYVCVSLGVPGGKTGCMFTPINVEVTSYEPEVVGLSLCAKTIGVQSNPARPRTVSPMLDLAQVSEASGKLQTLLGEVLNYVEDVLAEKQQPDNFVGRALLDLIHS 239          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_MALGO (Eukaryotic translation initiation factor 3 subunit F OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=MGL_1945 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.527e-32
Identity = 96/260 (36.92%), Postives = 140/260 (53.85%), Query Frame = 3
Query:   30 KKIRMAASDRTVLQFGPSSAV---TSNITA-KVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD--QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVP--NPVHLTVDTGF---RNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKS------TSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETV 758
            +K  +AAS    L F P+++    + +ITA KVHP+ +F+I D Y+RR     RVIGTLLG+   +  V++RN++ VPH E  D  Q+ LD E+H  ML  HL+V P EV++GW+ST   +   SALI + Y RE      +HLT++T      NG G V+ YVS  L    +     F  +P  L M   E+     L +      T +D L + LE ++  ++R+LT       YV   + G    D +VGR LS+T+
Sbjct:    3 EKSTLAASSALHLSFPPAASGVFHSRSITAVKVHPVALFSILDHYLRRDVSQPRVIGTLLGT-RSESEVEVRNAFAVPHGESQDPWQIHLDAEHHRRMLDLHLRVRPDEVVLGWYSTNTELNSNSALIQDHYSRETAPHQAIHLTLNTNVADEANGLG-VQCYVSALLGAMAKPEDCAFLSLPTHLLMSTPEQTALRHLAAPKPQNITDLDALKASLEDVQAKLDRVLT-------YVRRVLAGEVEGDKAVGRYLSDTI 253          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPCL (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus clavatus GN=ACLA_026150 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.247e-31
Identity = 87/240 (36.25%), Postives = 136/240 (56.67%), Query Frame = 3
Query:   81 SSAVTSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLA--AQFQEIPLDLRMIEAERVGFDILKS-----TSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVA 761
            S+  T+ +   + P  IF+I D  +RR    ERVIGTLLG+   DGT V+IR+++ V H E +DQV +D+EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T       T +AY+S  + +   + A  A F  +P ++R  EAE+ G + + S          + +D+E +E  +E +L +I+ + +YV+  ++  A    ++G+ L  T+A
Sbjct:   21 SAPTTAPLNVVIQPQAIFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTVSTEAGKDIET-RAYISAPVGVTAERAADSAAFIPVPYEIRYGEAEKSGLEAISSARDAENRATNIFTDIEALERAIEDVLGMIDRVSRYVESVIDEEAPASTALGQFLLNTLA 259          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_BOMMO (Eukaryotic translation initiation factor 3 subunit F OS=Bombyx mori GN=eIF3-S5 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.934e-31
Identity = 83/230 (36.09%), Postives = 119/230 (51.74%), Query Frame = 3
Query:   99 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST--------SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVAS 764
            NI+ KVHP+V+F I D Y RR   + RVIGTL G+    G V++ N + VPH E +DQV  ++ Y   + + + +VN  E IVGW++TG  VT  S++IHE+Y RE   PVH+T+DT    G   ++AYV V L + + +    F  + + L   E E VG  + + T        S     SDL  +      L +L+    +Y D    G A  D   GR L +   S
Sbjct:    4 NISVKVHPVVLFQIVDAYERRNADSHRVIGTLWGTS-DKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKTVSGGGRGSSGVAAGSDLAQVMSAASSLESLLEQALQYADGAAAG-APADAEAGRALLQLAHS 231          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_PHANO (Eukaryotic translation initiation factor 3 subunit F OS=Phaeosphaeria nodorum GN=SNOG_04858 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.832e-31
Identity = 78/236 (33.05%), Postives = 136/236 (57.63%), Query Frame = 3
Query:   93 TSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLA--AQFQEIPLDLRMIEAERVGFDILKSTS-----VDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVA 761
            T+ +   + P  +F+I D  +RRP   ERVIGTLLG+   DGT ++IRN Y VPH E ++QV +D++Y   ML  HL+ NP+EV+VGW++T   +   SALI  FY ++     P+P VHLTV T     +   + Y+S  + +   + A    F  +P +++  EAE+ G +++ S         ++ +DL+ +E  ++ +L ++  +  YV++ ++  A P +++G+ L   ++
Sbjct:   25 TAPLNVAIQPQAVFSILDHSLRRPADQERVIGTLLGTRSEDGTEIEIRNCYAVPHTETAEQVEVDMDYQKQMLALHLRANPREVLVGWYATSSDLNTFSALIQNFYSQQGDGTWPHPAVHLTVST-VPGQDIESRTYISAPIGVTAERAADSCLFIPVPHEIKYGEAEKSGLELISSAKDREDRSQEIMTDLDSLERAVQHVLDMLERVSNYVNNVLDEEAEPSSALGQFLMNALS 259          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPOR (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus oryzae GN=AO090005001590 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.005e-31
Identity = 84/240 (35.00%), Postives = 135/240 (56.25%), Query Frame = 3
Query:   81 SSAVTSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLA--AQFQEIPLDLRMIEAERVGFDILKS-----TSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVA 761
            S+  T+ +   +HP  +F+I D  +RR    ERVIGTLLG+   DGT V+IR ++ V H E +DQV +D+EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T     +   +AY+S  + +   + A  A F  +P ++R  E E+ G + + +     +    + +D+E +E  +E +L +I+ + KYV+  ++  A    ++G+ L   +A
Sbjct:   21 SAPTTAPLNVVIHPQALFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRTTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTFPHPAVHLTVSTE-PGKDVETRAYISAPVGVTAERAADSAAFIPVPYEIRYGETEKSGLESIAAARDVESRAANIFTDIEALERAVEEVLGMIDRVSKYVESVIDEEAPASTALGQFLLNALA 259          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_NEOFI (Eukaryotic translation initiation factor 3 subunit F OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=NFIA_016300 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.537e-31
Identity = 85/240 (35.42%), Postives = 136/240 (56.67%), Query Frame = 3
Query:   81 SSAVTSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLA--AQFQEIPLDLRMIEAERVGFDILKS-----TSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVA 761
            S+  T+ +   + P  IF+I D  +RR    ERVIGTLLG+   DGT V+IR+++ V H E +DQV +D+EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T     +   +AY+S  + +   + A  A F  +P ++R  EAE+ G + + S     +    + +D+E +E  +E +L +I+ + +YV+  ++  A    ++G+ L   +A
Sbjct:   21 SAPTTAPLNVVIQPQAIFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTVSTE-PGKDIETRAYISAPVGVTAERAADSAAFIPVPYEIRYGEAEKSGLETIASAKDAESRATNIFTDIEALERAIEEVLGMIDRVSRYVESVIDEEAPASTALGQFLLNALA 259          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPFU (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus fumigatus GN=AFUA_1G09330 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.537e-31
Identity = 85/240 (35.42%), Postives = 136/240 (56.67%), Query Frame = 3
Query:   81 SSAVTSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLA--AQFQEIPLDLRMIEAERVGFDILKS-----TSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVA 761
            S+  T+ +   + P  IF+I D  +RR    ERVIGTLLG+   DGT V+IR+++ V H E +DQV +D+EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T     +   +AY+S  + +   + A  A F  +P ++R  EAE+ G + + S     +    + +D+E +E  +E +L +I+ + +YV+  ++  A    ++G+ L   +A
Sbjct:   21 SAPTTAPLNVVIQPQAIFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTVSTE-PGKDIETRAYISAPVGVTAERAADSAAFIPVPYEIRYGEAEKSGLEAIASAKDAESRATNIFTDIEALERAIEEVLGMIDRVSRYVESVIDEEAPASTALGQFLLNALA 259          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPFC (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_008750 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.537e-31
Identity = 85/240 (35.42%), Postives = 136/240 (56.67%), Query Frame = 3
Query:   81 SSAVTSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLA--AQFQEIPLDLRMIEAERVGFDILKS-----TSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVA 761
            S+  T+ +   + P  IF+I D  +RR    ERVIGTLLG+   DGT V+IR+++ V H E +DQV +D+EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T     +   +AY+S  + +   + A  A F  +P ++R  EAE+ G + + S     +    + +D+E +E  +E +L +I+ + +YV+  ++  A    ++G+ L   +A
Sbjct:   21 SAPTTAPLNVVIQPQAIFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTVSTE-PGKDIETRAYISAPVGVTAERAADSAAFIPVPYEIRYGEAEKSGLEAIASAKDAESRATNIFTDIEALERAIEEVLGMIDRVSRYVESVIDEEAPASTALGQFLLNALA 259          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_USTMA (Eukaryotic translation initiation factor 3 subunit F OS=Ustilago maydis GN=UM00175 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.533e-30
Identity = 78/223 (34.98%), Postives = 126/223 (56.50%), Query Frame = 3
Query:  114 VHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD--QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVP--NPVHLTVDT---GFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVA 761
            VHP+ +F+I D Y+RR D   RVIGTLLG+   +  ++I+N + VPH E ++  QV +D+EYH +M +   KV P EVIVGW++T   +   SALI +FY RE      VHLT+DT   G +     +K+Y+S  L    +     F  +P +L     E     +L S ++    +DL+ + V ++++ + ++ +  YV   + G    D +VGR L++T++
Sbjct:   34 VHPVALFSILDHYLRRNDGQHRVIGTLLGT-RTESEIEIKNCFAVPHLEDAEEGQVQVDMEYHRSMYELCQKVRPDEVIVGWYATSPELNTYSALIQDFYSRETAPHQAVHLTMDTTIDGSKPSGLGIKSYISSPLGATPKAENCVFLPLPTNLLHSTPEHSSLSLLASQNISSPLTDLDALAVSLKQVQSQLDRVLTYVRAVISGEKEGDKAVGRFLNDTIS 255          
The following BLAST results are available for this feature:
BLAST of DR405867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
EIF3F_CULQU3.823e-3939.22Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MALGO4.527e-3236.92Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPCL2.247e-3136.25Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_BOMMO2.934e-3136.09Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_PHANO3.832e-3133.05Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPOR5.005e-3135.00Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_NEOFI8.537e-3135.42Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPFU8.537e-3135.42Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPFC8.537e-3135.42Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_USTMA5.533e-3034.98Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247P18 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247P18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405867 ID=DR405867; Name=DR405867; organism=Citrus sinensis; type=EST; length=765bp
GGGGGCTTTTTGAGTCGAGATCAGAAGAGAAGAAGATAAGAATGGCGGCA
AGCGACCGCACGGTGCTGCAATTCGGACCTTCATCAGCGGTGACGTCGAA
TATAACGGCGAAAGTTCACCCGCTGGTTATTTTCAACATCTCCGACTGTT
ACGTCAGACGCCCCGACCAAGCTGAACGCGTCATCGGCACGCTTCTTGGC
TCCGTTTTGCCTGATGGCACCGTCGATATCCGTAACTCCTACGTCGTTCC
TCACAACGAGTTCTCCGATCAGGTTGCATTGGATATTGAATACCATCATA
CCATGTTAAAGTCACACCTAAAGGTGAATCCTCAGGAAGTGATTGTTGGA
TGGTTTTCTACAGGGTTGGGAGTCACTGGTGGCAGTGCCTTGATCCATGA
ATTCTATTGTCGCGAAGTTCCTAATCCTGTCCACCTGACTGTAGATACAG
GATTCAGAAATGGAGAGGGTACTGTAAAAGCTTATGTTTCTGTCAATTTG
TCTCTTGGAGATCGACAGCTTGCTGCACAATTTCAAGAAATCCCTCTTGA
TCTTCGAATGATTGAAGCTGAGCGAGTTGGATTCGATATTCTGAAGTCAA
CATCGGTTGACAAACTCCCTAGTGATTTGGAAGGAATGGAAGTCCTGATG
GAACGGCTACTAACTCTTATTAACGATATCTACAAATATGTTGATGACAC
TGTGGAAGGGCATGCTGTACCTGATAATAGTGTAGGGCGTATTCTTTCAG
AGACTGTAGCCTCCC
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