DR405867

Overview
NameDR405867
Unique NameDR405867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPTN (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ATEG_08559 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.439e-30
Identity = 83/240 (34.58%), Postives = 134/240 (55.83%), Query Frame = 3
Query:   81 SSAVTSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLA--AQFQEIPLDLRMIEAERVGFDILKST-----SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVA 761
            S+  T+ +   + P  +F+I D  +RR    ERVIGTLLG+   DGT V+IR+++ V H E +DQV +D+EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T     +   +AY+S  + +   + A  A F  +P ++R  E E+ G + + +          L +D+E +E  +E +L +I+ + +YV+  ++  A    ++G+ L   +A
Sbjct:   21 SAPTTAPLNVVIQPQALFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTFPHPAVHLTVSTE-PGKDIETRAYISAPVGVTAERAADSAAFIPVPHEIRYGETEKSGLEAIAAARDAEERAANLFTDIEALERAIEEVLGMIDRVSRYVESVIDEEAPASTALGQFLLNALA 259          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPNC (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=An08g00880 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.439e-30
Identity = 84/240 (35.00%), Postives = 137/240 (57.08%), Query Frame = 3
Query:   81 SSAVTSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLA--AQFQEIPLDLRMIEAERVGFDILKSTSVDK-----LPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVA 761
            ++  T+ +   + P  +F+I D  +RR    ERVIGTLLG+   DGT V+IR+++ V H E +DQV +D+EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T       T +AY+S  + +   + A  A F  +P ++R  EAE+ G + + +    +     + +D+E +E  +E +L +I+ + +YV+  ++  A    ++G+ L  T+A
Sbjct:   21 TAPTTAPLNVVIQPQALFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTVSTEAGKDIET-RAYISAPVGVTAERAADSAAFIPVPYEIRYGEAEKSGLEAIGAARDAEERRANIFTDIEALERAIEDVLGMIDRVSRYVESVIDEEAPASTALGQYLLNTLA 259          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_COCIM (Eukaryotic translation initiation factor 3 subunit F OS=Coccidioides immitis GN=CIMG_07134 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.233e-29
Identity = 85/236 (36.02%), Postives = 129/236 (54.66%), Query Frame = 3
Query:   93 TSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLA--AQFQEIPLDLRMIEAERVGFDILKST-----SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVA 761
            T+ +   + P  IF+I D  +RR    ERVIGTLLG+   DGT V+IR  + V H E +DQV +D+EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T     +   + Y+S  + +   + A  A F  +P ++R  EAER G + +            L +D+E +E  +E +L +I+ + KYV+  ++  A    ++G+ L   +A
Sbjct:   25 TAPLNVVIQPQAIFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRTCFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYGGQGDGTWPHPAVHLTVSTE-PGKDIETRTYISAPVGVTAERAADSAAFIPVPYEIRYSEAERNGLEAIAQARDAEDRASSLFTDIETLEKSIEEVLGMIDRVSKYVESVIDEEAPASTALGQFLLNALA 259          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_SCHPO (Eukaryotic translation initiation factor 3 subunit F OS=Schizosaccharomyces pombe GN=eif3f PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.990e-29
Identity = 85/253 (33.60%), Postives = 133/253 (52.57%), Query Frame = 3
Query:   42 MAASDRTVLQFGPSSAVTSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREV----------PNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQL-AAQFQEIPLDLRMIEAERVGFDILKSTSVD-----KLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRIL 746
            MA   + VL     S+ +S +   + P V+F+I D   R+ +  +RVIGTLLG+   DG  ++I++ + VPHNE S+QV +++EYH  M   HLK NP+EV+VGW++T   +   SALI   Y              P+P VHLTV+T   +    +K YVS  + + +R   +  F   P  +R  EA R G   + +   D      L +DL+ +      LL++I  +  YV + ++G +  + +VGR L
Sbjct:    1 MALGTKHVLHLTKPSSRSSPLNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVEVEMEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSALIQNLYASPAEPGTAPLGTYPHPCVHLTVNTDV-SSPLAIKTYVSSPVGITERLADSCAFVPTPFTIRDDEAVRSGLKAVAAPKNDPSRLASLFTDLQQLRRSTLELLSMIERVSDYVQNVIDGSSPANVAVGRYL 252          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EI3F2_DROWI (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila willistoni GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.726e-27
Identity = 68/228 (29.82%), Postives = 126/228 (55.26%), Query Frame = 3
Query:  114 VHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPD-GTVDIRNSYVVPHNEF--SDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVP--NPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTS------VDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVAS 764
            + PLV+ +I D Y RRP    +VIGTLLG   P+ G ++I N + + H ++  SD++ +D++Y + M + +    PQE I+GW++TG  V+  +  +HE+Y RE    NP+HL +DT  R     ++ Y +V + + +      F  +P+++     E V  +++K  +      V ++  +L  +  +   L T ++ + +YV++T+     P+N+VGR L + + S
Sbjct:   13 LQPLVLLHIIDAYERRPKDCTQVIGTLLGRNNPESGHLEISNCFTLLHKDYPNSDRIDVDLQYANDMYELNQLTYPQEKIIGWYATGKEVSRSAVNLHEYYARECADGNPMHLLIDTSLRGQRMMMRLYTAVVMGVPNGTKGLMFSLLPVEMSSGNPESVALNLMKKNALQPTKQVGRILPELVQVVDITRDLQTKLDLVLRYVNETLARKRTPNNTVGRALHDALTS 240          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EI3F2_DROAN (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila ananassae GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.848e-26
Identity = 77/236 (32.63%), Postives = 122/236 (51.69%), Query Frame = 3
Query:   99 NITAKV--HPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD--QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPN--PVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDK--------LPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVAS 764
            N+ AKV   PLV+F I D Y RRP  A ++IGTLLG       + I N + V H E  D  ++ LD+ Y + ML+ +    PQE ++GWFSTG  V+  + L+H++Y RE  +  P+HL VD   +    + + Y  V + +        F  +PL++    AE V   +++  ++          LP  ++ +E   E  L L + + +Y++D +     PDN VGR L +T+ S
Sbjct:    6 NLQAKVVLQPLVLFQIIDSYERRPKDATQIIGTLLGRS-NGKEITITNCFTVLHKEHPDSARIDLDLGYANDMLELNQLTYPQEKVLGWFSTGKSVSRSALLLHDYYSRECSDGQPLHLLVDATLKGQRLSTRLYCGVEMGVPGGTKGLMFSLVPLEMASDSAEMVALRLMQKQNLQPGAKQVGRILPELVQVVEATRELQLRL-DLVLRYINDVLARKRRPDNVVGRALHDTLTS 239          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EI3F2_DROME (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila melanogaster GN=eIF3-S5-2 PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.037e-24
Identity = 69/229 (30.13%), Postives = 118/229 (51.53%), Query Frame = 3
Query:   99 NITAKVH--PLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD--QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREV--PNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPSDLEGMEVLMERLLTLIND-------IYKYVDDTVEGHAVPDNSVGRIL 746
            ++ AKV+  PLV F I D Y RRP    +V+GTLLG    +G ++I N + VPH E S+  ++ LD+ Y   +L+ ++   P E ++GWF TG  V+  ++LIH++Y RE     P+HL VD   +N   + + Y +V + +        F  +PL++    ++ V    ++  S  +    +E     + +++    D       + +Y++D +     PDN VGR L
Sbjct:    6 SMRAKVYLKPLVFFQIIDAYDRRPKGDNQVMGTLLGRN-KEGHIEITNCFTVPHKEHSENKRIDLDMAYASEVLELNMFAYPNERVLGWFCTGKSVSRSASLIHDYYVRECCEGQPLHLLVDAALKNQRLSTRLYCAVEMGVPGGTKGLMFSLVPLEISNENSDLVALRCIEKQSQQQASKQMERFVPELAQVVDATRDMQHRLDLVLRYINDVLARKKKPDNVVGRSL 233          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EI3F2_DROSE (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila sechellia GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.537e-24
Identity = 70/235 (29.79%), Postives = 119/235 (50.64%), Query Frame = 3
Query:   99 NITAKVH--PLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD--QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREV--PNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPSDLEGMEVLMERLLTLINDI-------YKYVDDTVEGHAVPDNSVGRILSETVAS 764
            +I AKV   PLV+F I D Y RRP    +V+GTLLG    D  ++I N + VPH E S+  ++ LD+ Y   +L+ ++   P E ++GWF TG  V+  ++LIH++Y RE     P+HL VD   +N   + + Y +V + +        F  +PL++    ++ V    ++  S  +    +E     + +++    +I        +Y++D +     PDN VGR L   + +
Sbjct:    6 SIRAKVFLKPLVLFQIIDAYDRRPKGDNQVMGTLLGRTKEDH-IEITNCFTVPHKEHSENKRIDLDMAYASEVLELNMFAYPNERVLGWFCTGKSVSRSASLIHDYYVRECGERQPLHLLVDASLKNQRLSTRLYCAVEMGVPGGTKGLMFSLVPLEISSENSDLVAVRCIEKQSQQQASKQMERFVPELVQVVDATRNIQQRLDLLLRYINDVLARKKKPDNLVGRSLQAALTA 239          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EI3F2_DROSI (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila simulans GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.739e-24
Identity = 66/226 (29.20%), Postives = 114/226 (50.44%), Query Frame = 3
Query:  120 PLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD--QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREV--PNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPSDLEGMEVLMERLLTLINDI-------YKYVDDTVEGHAVPDNSVGRILSETVAS 764
            PLV+F I D Y RRP    +V+GTLLG    D  ++I N + VPH E S+  ++ LD+ Y   +L+ ++   P E ++GWF TG  V+  ++LIH++Y RE     P+HL VD   +N   + + Y +V + +        F  +PL++    ++ +    ++  S  +    +E     + +++    DI        +Y++D +     PDN VGR L   + +
Sbjct:   15 PLVLFQIIDAYDRRPKGDNQVMGTLLGRNKEDH-IEITNCFTVPHKEHSENKRIDLDMTYASEVLELNMFAYPNERVLGWFCTGKSVSRSASLIHDYYVRECGERQPLHLLVDASLKNQRLSTRLYCAVEMGVPGGTKGLMFSLVPLEISSENSDLLAMRCIEKQSQQQASKQMERFAPELVQVVDATRDIQQRLDLLLRYINDVLARKKKPDNVVGRSLQAALTA 239          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EI3F2_DROPS (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.011e-23
Identity = 71/236 (30.08%), Postives = 119/236 (50.42%), Query Frame = 3
Query:   99 NITAKV--HPLVIFNISDCYVRRPDQAERVIGTLLGSVL-PDGTVDIRNSYVVPHNEFSDQ---VALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPN--PVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDL-----RMIEAERVGFDILKST-SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVAS 764
            N+ +KV  HPLV+F I D Y RR      V+GTLLG+V    G ++I N + V H    D    + LD++Y + ML+      PQE ++GWFSTG  V+  +  +HE+Y R+  N  P+HL +DT  R      + + +V   +        F  +P+D+      ++    +G    + T    +L  +LE +    + +   ++ + +Y++D +     PDN+VGR L + + S
Sbjct:    7 NLQSKVLLHPLVLFQIIDAYERRAKDVPEVLGTLLGTVAGKTGRIEITNCFSVVHRMHGDNNCHIDLDLKYDNDMLELAQIAYPQEKVLGWFSTGKSVSAAAVELHEYYERQCHNGQPLHLLMDTSLRGQRMNTRIFCAVATGVPGGTKGLMFSLLPMDIYFGSPDIVAMRHMGRQCAQPTKDAGRLLPELEQVVDATKDIQQKLDLVLRYINDILNRKRRPDNTVGRALHDVLTS 242          
The following BLAST results are available for this feature:
BLAST of DR405867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
EIF3F_ASPTN9.439e-3034.58Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPNC9.439e-3035.00Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_COCIM1.233e-2936.02Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_SCHPO7.990e-2933.60Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROWI5.726e-2729.82Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROAN4.848e-2632.63Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROME2.037e-2430.13Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROSE4.537e-2429.79Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROSI7.739e-2429.20Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROPS1.011e-2330.08Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247P18 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247P18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405867 ID=DR405867; Name=DR405867; organism=Citrus sinensis; type=EST; length=765bp
GGGGGCTTTTTGAGTCGAGATCAGAAGAGAAGAAGATAAGAATGGCGGCA
AGCGACCGCACGGTGCTGCAATTCGGACCTTCATCAGCGGTGACGTCGAA
TATAACGGCGAAAGTTCACCCGCTGGTTATTTTCAACATCTCCGACTGTT
ACGTCAGACGCCCCGACCAAGCTGAACGCGTCATCGGCACGCTTCTTGGC
TCCGTTTTGCCTGATGGCACCGTCGATATCCGTAACTCCTACGTCGTTCC
TCACAACGAGTTCTCCGATCAGGTTGCATTGGATATTGAATACCATCATA
CCATGTTAAAGTCACACCTAAAGGTGAATCCTCAGGAAGTGATTGTTGGA
TGGTTTTCTACAGGGTTGGGAGTCACTGGTGGCAGTGCCTTGATCCATGA
ATTCTATTGTCGCGAAGTTCCTAATCCTGTCCACCTGACTGTAGATACAG
GATTCAGAAATGGAGAGGGTACTGTAAAAGCTTATGTTTCTGTCAATTTG
TCTCTTGGAGATCGACAGCTTGCTGCACAATTTCAAGAAATCCCTCTTGA
TCTTCGAATGATTGAAGCTGAGCGAGTTGGATTCGATATTCTGAAGTCAA
CATCGGTTGACAAACTCCCTAGTGATTTGGAAGGAATGGAAGTCCTGATG
GAACGGCTACTAACTCTTATTAACGATATCTACAAATATGTTGATGACAC
TGTGGAAGGGCATGCTGTACCTGATAATAGTGTAGGGCGTATTCTTTCAG
AGACTGTAGCCTCCC
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