DR405867

Overview
NameDR405867
Unique NameDR405867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig259 contig Csv1_Contig259:41..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_CRYNE (Eukaryotic translation initiation factor 3 subunit F OS=Cryptococcus neoformans GN=CNF04540 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.252e-23
Identity = 83/241 (34.44%), Postives = 124/241 (51.45%), Query Frame = 3
Query:   66 LQFGPSSAVT---SNITAKVHPLVIFNISDCYVRRPDQAE--RVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREV-PNP-VHLTVDTGF-RNGEGT-VKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPS--DLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSE 752
            LQ  P+S+     S IT  VHP VI  I   + R    +E  RVIG L+G+   +G  VDIR+ + VPH E   Q+++D  +   M+    K   +EVIVGW+++   V   SA+I E++  E  P P VHLTVDT    +G+G  VK +VS  L L  +   + F  +P+ ++  ++ER   D+L +      P+   L  +   + +L +LI+    YV     G   PD  +GR L E
Sbjct:   12 LQLPPTSSSLRPPSQIT--VHPSVIAQILTHHSRHSADSESTRVIGALMGNRSDNGQEVDIRSCFAVPHTEQGQQISVDRPFQQDMVNFLAKNGTKEVIVGWYASQKTVNSNSAIIQEYFSFETNPYPAVHLTVDTDIEESGKGLGVKGWVSQPLGLTSKSECSVFVPVPVSIKYADSERAALDLLTAPQPTPSPALPPLPTLSNSLSQLSSLIDQCLAYVQSVNNGSQTPDVEIGRYLLE 250          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EI3F2_DROER (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila erecta GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.941e-23
Identity = 66/222 (29.73%), Postives = 113/222 (50.90%), Query Frame = 3
Query:  114 VHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD--QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREV--PNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPSDLEGMEVLMERLLTLINDI-------YKYVDDTVEGHAVPDNSVGRIL 746
            + PLV+F I D Y RRP    +VIGTLLG    +G  +I N + VPH E  +  ++ LDI Y   +L+ ++   P E ++GWF TG  V+  ++L+H++Y RE     P+HL VD   ++   + + Y +V + +        F  +PL++    ++ V    ++  S+ +    L+     + +++    DI        +Y+ D ++    PDN VGR L
Sbjct:   13 IKPLVLFQIIDSYERRPKGDNQVIGTLLGRN-KEGHFEITNCFTVPHKEHPEINRIDLDIAYASEILELNMLTYPNERVLGWFCTGKSVSRSASLLHDYYARECGEVQPLHLVVDATLKSQRLSTRLYCAVEIGVPGGTKGLMFSLVPLEISNGNSDLVALRSIEKQSLQQGTKQLDRFIPELVQVVDATRDIQQRLDLVLRYIKDVLDRKRKPDNVVGRAL 233          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_NEUCR (Eukaryotic translation initiation factor 3 subunit F OS=Neurospora crassa GN=1A9.200 PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.841e-23
Identity = 76/249 (30.52%), Postives = 130/249 (52.21%), Query Frame = 3
Query:   63 VLQFGPSSAVTSNITAKVHPLVIFNISDCYVRRPD---QAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCR----EVPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQ--FQEIPLDLRMIEAERVGFDILKSTSVDK-----LPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVA 761
            VL FG S+A    +T  + P  +F+I D  VRR D   Q+ RVIG L+G    DG+ V++R+++ +PH E  DQV +D+EY   ML   LK NP+E ++GW++T   +   SALI  F+        P+P VHLT+ T         K Y+S  +++   + A    F E+P  L   +AER     + + +  +     + SD+E +   +E +  L+  +  +V + ++     ++++G+ L   ++
Sbjct:   19 VLGFGVSNAP---LTVNIQPQAVFSIIDHAVRRDDRDTQSTRVIGALVGVRSEDGSEVEVRSTFAIPHTENEDQVEVDVEYQKNMLALTLKANPRETLLGWYTTSHELNSFSALIQNFFASPETGTFPHPAVHLTIGTE-AGATIDTKTYISAPVAVSPERAAESCLFIEVPHKLLFTDAERGALGSVAAAADAESRSAPVVSDIENLAQALETVSDLLERVSGFVGEVLDEERDGNHALGQYLMNALS 263          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EI3F2_DROPE (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila persimilis GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.552e-23
Identity = 71/236 (30.08%), Postives = 115/236 (48.73%), Query Frame = 3
Query:   99 NITAKV--HPLVIFNISDCYVRRPDQAERVIGTLLGSVL-PDGTVDIRNSYVVPHNEFSDQ---VALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPN--PVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFD------ILKSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVAS 764
            N+ +KV  HPLV+F I D Y RR      V+GTLLG V    G ++I N + V H    D    + LD++Y + ML+      PQE +VGWFSTG  V+  +  +HE+Y R+  +  P+HL +DT  R      + + +V   +        F  +P+D+     + V          L      +L  +LE +    + +   ++ + +Y++D +     PDN+VGR L + + S
Sbjct:    7 NLQSKVLLHPLVLFQIIDAYERRAKDVPEVLGTLLGIVAGKTGRIEITNCFSVVHRMHGDNNCHIDLDLKYDNDMLELAQIAYPQEKVVGWFSTGKAVSAAAVELHEYYERQCHSGQPLHLLMDTSLRGQRMNTRIFCAVATGVPGGTKGLMFSLLPMDIYFGSPDIVAMRHMGRQCALPPKEAGRLLPELEQVVDATKDIQQKLDLVLRYINDILNRKRRPDNTVGRALHDVLTS 242          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EI3F2_DROYA (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila yakuba GN=eIF3-S5-2 PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.460e-22
Identity = 66/225 (29.33%), Postives = 113/225 (50.22%), Query Frame = 3
Query:  114 VHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD--QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVP--NPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPSDLEGMEVLMERLLTLIND----------IYKYVDDTVEGHAVPDNSVGRIL 746
            + PLV+F I D Y RRP    +V+GTLLG    +G  +I N + VPH E  +  ++ LDI Y    L+ ++     E ++GWFSTG  V+  ++L+H++Y RE     PVHL +D   ++   + + Y +V + +        F  +PL++    ++ V    L+S     L    + ME  +  L+ +++           + +Y++D +     PDN +GR L
Sbjct:   13 IKPLVLFQIIDAYERRPKGDNQVMGTLLGRN-KEGHFEITNCFPVPHKEHPEINRIDLDISYASEFLELNMLTYSNERVLGWFSTGKSVSRSASLLHDYYARECGEIQPVHLVMDATLKSQRLSTRLYCAVEIGVPGGTKGLMFSLVPLEISNGNSDLVA---LRSLEKQSLQQGTKQMERFLPELVQVVDATRDIQQRLDLVLRYINDVLARKRKPDNVIGRAL 233          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EI3F2_DROVI (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila virilis GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.490e-22
Identity = 73/233 (31.33%), Postives = 114/233 (48.93%), Query Frame = 3
Query:  111 KVHPLVIFNISDCYVRRPDQAERVIGTLLGSV-LPDGTVDIRNSYVVPHNEFS----DQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPN--PVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIP-LDLRMIEAERVGFDILKSTSVD-------KLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVAS 764
            ++ PLV+F I   Y RRP  A+  +GTLLG     +  ++I NSY V H E      +Q  LD +Y   M + +    PQE I+GW+STG  ++  +A +H +Y RE  +  P+HL VDT  R G  + + Y  V + +        F  +P L L     E V   +++  ++         LP  +  ME   E L   +  + +Y++D +     PDNS+GR L + + S
Sbjct:   13 RLQPLVLFQIIAAYERRPKTAKMAVGTLLGRRDRCNDIIEITNSYTVQHKEQQIGEMEQFKLDTQYASEMFELNQITYPQEKIIGWYSTGKSLSRSAAALHAYYSRECGDVQPLHLLVDTTLRGGHLSTRLYCGVTMGVPGGTRGLLFTLLPLLKLNTDGDESVALRLMQKQALHPTKQLGRMLPELVHVMEATRE-LEQKLELVMRYINDVLARKRRPDNSIGRALHDALTS 244          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EI3F2_DROMO (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila mojavensis GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.252e-22
Identity = 73/233 (31.33%), Postives = 115/233 (49.36%), Query Frame = 3
Query:  111 KVHPLVIFNISDCYVRRPDQAERVIGTLLGSV-LPDGTVDIRNSYVVPHNEFS----DQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPN--PVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEA-ERVGFDILKSTSVD-------KLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVAS 764
            ++ PLV+F I   Y RRP  A+  +GTLLG     +  ++I NSY V H E      +Q  LD +Y   M + +    PQE I+GW+ TG  ++  +A +H +Y RE  +  P+HL VDT  R G  T + Y +V + +        F  +PL     E  E V   +++  ++         LP  +  ME   E L   ++ + +Y++D +     PDNS+GR L + + S
Sbjct:   13 RLQPLVLFQIIAAYERRPKTAKMAVGTLLGRRDRCNDIIEITNSYTVQHKEQQIGDMEQFKLDTQYASEMFELNQVTYPQEKIIGWYCTGKTLSRSAAALHGYYSRECGDMQPLHLLVDTSLRGGRLTTRLYCAVTMGVPGGTRGLLFTLLPLLKVNAEGDEAVALRLMQKQALHPTKQLGRMLPELVHVMEATRE-LEQKLDLVMRYINDVLTRKRRPDNSIGRALHDALTS 244          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_YARLI (Eukaryotic translation initiation factor 3 subunit F OS=Yarrowia lipolytica GN=YALI0E26851g PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.108e-21
Identity = 66/222 (29.73%), Postives = 115/222 (51.80%), Query Frame = 3
Query:  129 IFNISDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRM---IEAERVGFDILKSTSVD-----KLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNS--VGRILSETV 758
            +F I D  +RR ++  +VIGTL+G    DG+ V++RN+Y VPH+E   ++ +D+EY+ TML  H K  P+EVIVGW++T   +   S LIH++Y +    P +HLTV+          + YV+  + +   + +     +P+   +     A+R   + + S          L SDL  +E  + ++L ++  +  YV   + G    + +  VG+ L  T+
Sbjct:   27 LFQILDHALRREEEQSKVIGTLVGIRSEDGSEVEVRNAYAVPHSESEQEMTIDLEYNPTMLALHRKAFPKEVIVGWYATSSELNTFSGLIHDYYTQLDGTPAIHLTVEAANLADTLLPRTYVASAVGIDPSKNSGNCVFVPISNEVKFNDSADRAALEAISSARESPERSINLTSDLANLENSLTQVLDMLERVQTYVARVISGEESSEKAQQVGKQLLSTL 248          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EIF3F_CHAGB (Eukaryotic translation initiation factor 3 subunit F OS=Chaetomium globosum GN=CHGG_00662 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.753e-21
Identity = 70/236 (29.66%), Postives = 121/236 (51.27%), Query Frame = 3
Query:  102 ITAKVHPLVIFNISDCYVRRPD---QAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCR----EVPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQ--FQEIPLDLRMIEAERVGFDILKS---TSVDKLP--SDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVA 761
            +T  + P  +F++ D  VRR     Q+ RVIG L+G+   DG+ V++R+++ +PH E  DQV +D+EY   ML   LK +P+E ++GW++T   +   SALI  F+        P+P VHLT+ T         KAY+S  +++   + A    F E+P  L   +AER       +   T     P  SD+E +   +E +  L+  +  +V + ++      +++G+ L   ++
Sbjct:   28 LTVHIQPQAVFSVIDHAVRRDTRDTQSTRVIGALVGTRSEDGSEVEVRSTFAIPHTENEDQVEVDVEYQKNMLALTLKASPRETLLGWYTTSHELNSFSALIQNFFASPETGTFPHPAVHLTISTE-PGAPIATKAYISAPVAVSPERAAESCLFIEVPHKLLFSDAERAALGTATAAAETEARSAPVISDIETLAQSLESVSDLLERVSGFVGEVLDEERDGSHALGQYLMNALS 262          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: EI3F2_DROGR (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila grimshawi GN=eIF3-S5-2 PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.046e-20
Identity = 71/233 (30.47%), Postives = 115/233 (49.36%), Query Frame = 3
Query:  111 KVHPLVIFNISDCYVRRPDQAERVIGTLLG-SVLPDGTVDIRNSYVVPHNEFS----DQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPN--PVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEA-ERVGFDILKSTSVDK-------LPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVAS 764
            ++ PLV+F I   Y  RP  AE  +GTLLG     + T++I NSY+V H        +QV LD +Y   M + +   NPQE IVGW++T   ++  SA +H +Y RE  +  P+HL VD   R G    + Y  V + +        F  +PL     E  + V   ++++ +++        LP  +  +E+ +  L   ++ + +Y+ D +    +PD  VGR L E + S
Sbjct:   13 RLQPLVLFQIISAYEHRPKLAEVAVGTLLGLRDRSNDTIEITNSYMVIHKTQQIGEMEQVKLDKQYASEMYELNQINNPQEKIVGWYNTAKSLSRSSAALHAYYARECADAQPLHLLVDLKLRGGRLNTRLYCGVPIGVPGGTKGLMFTLLPLLKMGTEIDDSVALRVMQNYALNPAKQPGRILPELMSVLEITL-ALEEKLDLLLRYIKDVLARKRLPDKRVGRALYEALTS 244          
The following BLAST results are available for this feature:
BLAST of DR405867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
EIF3F_CRYNE2.252e-2334.44Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROER2.941e-2329.73Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_NEUCR3.841e-2330.52Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROPE6.552e-2330.08Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROYA1.460e-2229.33Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROVI2.490e-2231.33Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROMO3.252e-2231.33Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_YARLI2.108e-2129.73Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_CHAGB2.753e-2129.66Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROGR1.046e-2030.47Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247P18 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247P18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405867 ID=DR405867; Name=DR405867; organism=Citrus sinensis; type=EST; length=765bp
GGGGGCTTTTTGAGTCGAGATCAGAAGAGAAGAAGATAAGAATGGCGGCA
AGCGACCGCACGGTGCTGCAATTCGGACCTTCATCAGCGGTGACGTCGAA
TATAACGGCGAAAGTTCACCCGCTGGTTATTTTCAACATCTCCGACTGTT
ACGTCAGACGCCCCGACCAAGCTGAACGCGTCATCGGCACGCTTCTTGGC
TCCGTTTTGCCTGATGGCACCGTCGATATCCGTAACTCCTACGTCGTTCC
TCACAACGAGTTCTCCGATCAGGTTGCATTGGATATTGAATACCATCATA
CCATGTTAAAGTCACACCTAAAGGTGAATCCTCAGGAAGTGATTGTTGGA
TGGTTTTCTACAGGGTTGGGAGTCACTGGTGGCAGTGCCTTGATCCATGA
ATTCTATTGTCGCGAAGTTCCTAATCCTGTCCACCTGACTGTAGATACAG
GATTCAGAAATGGAGAGGGTACTGTAAAAGCTTATGTTTCTGTCAATTTG
TCTCTTGGAGATCGACAGCTTGCTGCACAATTTCAAGAAATCCCTCTTGA
TCTTCGAATGATTGAAGCTGAGCGAGTTGGATTCGATATTCTGAAGTCAA
CATCGGTTGACAAACTCCCTAGTGATTTGGAAGGAATGGAAGTCCTGATG
GAACGGCTACTAACTCTTATTAACGATATCTACAAATATGTTGATGACAC
TGTGGAAGGGCATGCTGTACCTGATAATAGTGTAGGGCGTATTCTTTCAG
AGACTGTAGCCTCCC
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