DR405867

Overview
NameDR405867
Unique NameDR405867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig259 contig Csv1_Contig259:41..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: PSD7_MOUSE (26S proteasome non-ATPase regulatory subunit 7 OS=Mus musculus GN=Psmd7 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.759e-13
Identity = 64/213 (30.05%), Postives = 103/213 (48.36%), Query Frame = 3
Query:  114 VHPLVIFNISDCYVR--RPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVA---LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGD-RQLAAQFQEIPLDLRMIEAERVGFDIL----KSTSV----DKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEG 710
            VHPLV+ ++ D + R  +    +RV+G LLGS      +D+ NS+ VP +E     +   LD +Y   M     KVN +E IVGW+ TG  +      I+E   R  PN V + +D   ++     +AY+SV     D    +  F+ +  ++   EAE VG + L    K T+V     ++ + + G++ L  +LL    DI  Y++    G
Sbjct:   11 VHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGS-WQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLL----DIRSYLEKVASG 218          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: PSD7_HUMAN (26S proteasome non-ATPase regulatory subunit 7 OS=Homo sapiens GN=PSMD7 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.603e-13
Identity = 64/213 (30.05%), Postives = 103/213 (48.36%), Query Frame = 3
Query:  114 VHPLVIFNISDCYVR--RPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVA---LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGD-RQLAAQFQEIPLDLRMIEAERVGFDIL----KSTSV----DKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEG 710
            VHPLV+ ++ D + R  +    +RV+G LLGS      +D+ NS+ VP +E     +   LD +Y   M     KVN +E IVGW+ TG  +      I+E   R  PN V + +D   ++     +AY+SV     D    +  F+ +  ++   EAE VG + L    K T+V     ++ + + G++ L  +LL    DI  Y++    G
Sbjct:   11 VHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGS-WQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLL----DIRSYLEKVATG 218          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: CSN6_HUMAN (COP9 signalosome complex subunit 6 OS=Homo sapiens GN=COPS6 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.706e-13
Identity = 48/181 (26.52%), Postives = 92/181 (50.83%), Query Frame = 3
Query:   54 DRTVLQFGPSSAVTSNITAKVHPLVIFNISDCYVRRPDQAER---VIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFD 587
            D  V+    +  VT +++  +HPLVI NISD ++R   Q  R   VIG L+G       +++ NS+ +  +   +++ +D EY++T  +   +V  +   +GW++TG         +H+  C  + +P+ L ++   ++ +  V  + SV + + + +    F E+   L   EAER+G D
Sbjct:   23 DAAVVPSVMACGVTGSVSVALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQ-EGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERIGVD 201          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: PSD7_BOVIN (26S proteasome non-ATPase regulatory subunit 7 OS=Bos taurus GN=PSMD7 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.146e-13
Identity = 64/213 (30.05%), Postives = 103/213 (48.36%), Query Frame = 3
Query:  114 VHPLVIFNISDCYVR--RPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVA---LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGD-RQLAAQFQEIPLDLRMIEAERVGFDIL----KSTSV----DKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEG 710
            VHPLV+ ++ D + R  +    +RV+G LLGS      +D+ NS+ VP +E     +   LD +Y   M     KVN +E IVGW+ TG  +      I+E   R  PN V + +D   ++     +AY+SV     D    +  F+ +  ++   EAE VG + L    K T+V     ++ + + G++ L  +LL    DI  Y++    G
Sbjct:   11 VHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGS-WQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLL----DIRGYLEKVATG 218          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: RPN8_SCHPO (26S proteasome regulatory subunit rpn8 OS=Schizosaccharomyces pombe GN=rpn8 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.336e-12
Identity = 60/221 (27.15%), Postives = 103/221 (46.61%), Query Frame = 3
Query:   84 SAVTSNITAK---VHPLVIFNISDCYVRRPDQAER-VIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVA---LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQ-FQEIPLDLRMIEAERVGFDIL----KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEG 710
            S+ TS I  +   VHPLV+ +  D Y R     +R V+G LLG    D  V++ NSY +P  E     +   LD  +  +M +   K+N  E +VGW+ TG  +      I+    + +PNPV + +D   ++      AY +++    D   +++ F  +P  +   EAE +G + L    +  SV  L + +      ++ L   + +I  Y+   V+G
Sbjct:    6 SSETSTIVPQQVIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGD-VVNVANSYAIPFEEDEKNASVWFLDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPKSVGLPTNAYFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVEHLLRDTRDASVGTLATRVTQQAQSLQGLGQRLTEIADYLRKVVDG 225          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: CSN6_XENLA (COP9 signalosome complex subunit 6 OS=Xenopus laevis GN=cops6 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.050e-12
Identity = 59/229 (25.76%), Postives = 107/229 (46.72%), Query Frame = 3
Query:   81 SSAVTSNITAKVHPLVIFNISDCYVRRPDQAER---VIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDIL----------KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDN 728
            +  VT ++T  +HPLVI NISD ++R   Q  R   VIG L+G       +++ NS+ +      +++ ++ EY++T  +   +V      +GW++TG         +H+  C  + +P+ L ++   ++ +  V  Y SV + + + +      E+   L   EAER+G D +           ST  + L +    +++L  R    +  I +YV    EG  VP N
Sbjct:   23 AQGVTGSVTVALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQ-EGRNIEVMNSFELLSQINDEKITINKEYYYTKEEQFKQVFKDMEFLGWYTTGGTPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVYESV-IDIVNGEATMLLAELSYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSR----VRLILEYV-RAAEGGEVPFN 244          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: CSN6_XENTR (COP9 signalosome complex subunit 6 OS=Xenopus tropicalis GN=cops6 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.984e-12
Identity = 46/172 (26.74%), Postives = 86/172 (50.00%), Query Frame = 3
Query:   81 SSAVTSNITAKVHPLVIFNISDCYVRRPDQAER---VIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFD 587
            +  VT ++T  +HPLVI NISD ++R   Q  R   VIG L+G       +++ NS+ +      +++ ++ EY++T  +   +V      +GW++TG         +H+  C  + +P+ L ++   ++ +  V  Y SV + + + +      E+   L   EAER+G D
Sbjct:   24 AQGVTGSVTVALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQ-EGRNIEVMNSFELLSQINEEKITINKEYYYTKEEQFKQVFKDMEFLGWYTTGGTPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVYESV-IDIVNGEATMLLAELSYTLATEEAERIGVD 193          
BLAST of DR405867 vs. ExPASy Swiss-Prot
Match: RPN8_NEUCR (26S proteasome regulatory subunit rpn-8 OS=Neurospora crassa GN=rpn-8 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.159e-11
Identity = 62/227 (27.31%), Postives = 103/227 (45.37%), Query Frame = 3
Query:   99 NITAKVHPLVIFNISDCYVR---RPDQAERVIGTLLGSVLPDG-TVDIRNSYVVPHNEFSDQVA---LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQ-FQEIPLDLRMIEAERVGFDIL----KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEG-----HAVPDN 728
            N +  V PLV+ ++ D Y R      +++RV+G LLG    DG  V + NS+ VP  E     +   LD  Y  +M     KVN +E ++GW+ +G  +      I+E + R  PNP+ + VD   +       AY +V+    D    ++ F   P  +   EAE +G + L    +  +V  L + +      ++ L   + DI  Y+   ++G     HA+  N
Sbjct:   13 NRSVSVAPLVLLSVVDHYNRTQANKSKSKRVVGVLLGQ--NDGKNVRVSNSFAVPFEEDDKDPSVWFLDHNYVESMNDMFKKVNAREKLIGWYHSGPKLRASDLDINELFKRYTPNPLLVIVDVQPKETGVPTDAYFAVDEIKDDGTTTSKTFVHTPSIIEAEEAEEIGVEHLLRDIRDVAVGTLSTRITNQMRSLQGLHHRLRDIQAYLQKVLDGQLPVNHAILGN 237          
The following BLAST results are available for this feature:
BLAST of DR405867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
PSD7_MOUSE2.759e-1330.0526S proteasome non-ATPase regulatory subunit 7 OS=... [more]
PSD7_HUMAN3.603e-1330.0526S proteasome non-ATPase regulatory subunit 7 OS=... [more]
CSN6_HUMAN4.706e-1326.52COP9 signalosome complex subunit 6 OS=Homo sapiens... [more]
PSD7_BOVIN6.146e-1330.0526S proteasome non-ATPase regulatory subunit 7 OS=... [more]
RPN8_SCHPO2.336e-1227.1526S proteasome regulatory subunit rpn8 OS=Schizosa... [more]
CSN6_XENLA3.050e-1225.76COP9 signalosome complex subunit 6 OS=Xenopus laev... [more]
CSN6_XENTR3.984e-1226.74COP9 signalosome complex subunit 6 OS=Xenopus trop... [more]
RPN8_NEUCR1.159e-1127.3126S proteasome regulatory subunit rpn-8 OS=Neurosp... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247P18 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247P18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405867 ID=DR405867; Name=DR405867; organism=Citrus sinensis; type=EST; length=765bp
GGGGGCTTTTTGAGTCGAGATCAGAAGAGAAGAAGATAAGAATGGCGGCA
AGCGACCGCACGGTGCTGCAATTCGGACCTTCATCAGCGGTGACGTCGAA
TATAACGGCGAAAGTTCACCCGCTGGTTATTTTCAACATCTCCGACTGTT
ACGTCAGACGCCCCGACCAAGCTGAACGCGTCATCGGCACGCTTCTTGGC
TCCGTTTTGCCTGATGGCACCGTCGATATCCGTAACTCCTACGTCGTTCC
TCACAACGAGTTCTCCGATCAGGTTGCATTGGATATTGAATACCATCATA
CCATGTTAAAGTCACACCTAAAGGTGAATCCTCAGGAAGTGATTGTTGGA
TGGTTTTCTACAGGGTTGGGAGTCACTGGTGGCAGTGCCTTGATCCATGA
ATTCTATTGTCGCGAAGTTCCTAATCCTGTCCACCTGACTGTAGATACAG
GATTCAGAAATGGAGAGGGTACTGTAAAAGCTTATGTTTCTGTCAATTTG
TCTCTTGGAGATCGACAGCTTGCTGCACAATTTCAAGAAATCCCTCTTGA
TCTTCGAATGATTGAAGCTGAGCGAGTTGGATTCGATATTCTGAAGTCAA
CATCGGTTGACAAACTCCCTAGTGATTTGGAAGGAATGGAAGTCCTGATG
GAACGGCTACTAACTCTTATTAACGATATCTACAAATATGTTGATGACAC
TGTGGAAGGGCATGCTGTACCTGATAATAGTGTAGGGCGTATTCTTTCAG
AGACTGTAGCCTCCC
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