DR405861

Overview
NameDR405861
Unique NameDR405861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1492 contig Csv1_Contig1492:6..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR405861 vs. ExPASy Swiss-Prot
Match: H32_CHICK (Histone H3.2 OS=Gallus gallus GN=H3-I PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.445e-58
Identity = 117/136 (86.03%), Postives = 119/136 (87.50%), Query Frame = 1 
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405861 vs. ExPASy Swiss-Prot
Match: H32_CAIMO (Histone H3.2 OS=Cairina moschata PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.445e-58
Identity = 117/136 (86.03%), Postives = 119/136 (87.50%), Query Frame = 1 
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405861 vs. ExPASy Swiss-Prot
Match: H32_BOVIN (Histone H3.2 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.445e-58
Identity = 117/136 (86.03%), Postives = 119/136 (87.50%), Query Frame = 1 
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405861 vs. ExPASy Swiss-Prot
Match: H31_RAT (Histone H3.1 OS=Rattus norvegicus PE=1 SV=3)

HSP 1 Score: 226.098 bits (575), Expect = 1.445e-58
Identity = 117/136 (86.03%), Postives = 119/136 (87.50%), Query Frame = 1 
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405861 vs. ExPASy Swiss-Prot
Match: H31_MUSPA (Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3)

HSP 1 Score: 226.098 bits (575), Expect = 1.445e-58
Identity = 117/136 (86.03%), Postives = 119/136 (87.50%), Query Frame = 1 
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405861 vs. ExPASy Swiss-Prot
Match: H31_MOUSE (Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.445e-58
Identity = 117/136 (86.03%), Postives = 119/136 (87.50%), Query Frame = 1 
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405861 vs. ExPASy Swiss-Prot
Match: H31_HUMAN (Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.445e-58
Identity = 117/136 (86.03%), Postives = 119/136 (87.50%), Query Frame = 1 
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405861 vs. ExPASy Swiss-Prot
Match: H31_BOVIN (Histone H3.1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.445e-58
Identity = 117/136 (86.03%), Postives = 119/136 (87.50%), Query Frame = 1 
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405861 vs. ExPASy Swiss-Prot
Match: H33_VITVI (Histone H3.3 OS=Vitis vinifera PE=2 SV=3)

HSP 1 Score: 225.713 bits (574), Expect = 1.887e-58
Identity = 117/136 (86.03%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405861 vs. ExPASy Swiss-Prot
Match: H33_TOBAC (Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.887e-58
Identity = 117/136 (86.03%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of DR405861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H32_CHICK1.445e-5886.03Histone H3.2 OS=Gallus gallus GN=H3-I PE=1 SV=2[more]
H32_CAIMO1.445e-5886.03Histone H3.2 OS=Cairina moschata PE=2 SV=2[more]
H32_BOVIN1.445e-5886.03Histone H3.2 OS=Bos taurus PE=1 SV=2[more]
H31_RAT1.445e-5886.03Histone H3.1 OS=Rattus norvegicus PE=1 SV=3[more]
H31_MUSPA1.445e-5886.03Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3[more]
H31_MOUSE1.445e-5886.03Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2[more]
H31_HUMAN1.445e-5886.03Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2[more]
H31_BOVIN1.445e-5886.03Histone H3.1 OS=Bos taurus PE=1 SV=2[more]
H33_VITVI1.887e-5886.03Histone H3.3 OS=Vitis vinifera PE=2 SV=3[more]
H33_TOBAC1.887e-5886.03Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247P05 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247P05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405861 ID=DR405861; Name=DR405861; organism=Citrus sinensis; type=EST; length=705bp
GGGGGATCTTTCAATTTTCATTCATATTTTAAGATCTCCCAAGAAAAAAG
AAACACTTAATTTCCCAAATCAATGGCCCGCACGAAGCAAACCGCTCGCA
AGTCCACCGGAGGCAAGGCCCCAAGAAAGCAACTGGCGACCAAGGCGGCA
AGGAAATCCGCACCGGCAACCGGAGGAGTGAAGAAGCCTCACAGGTTCCG
TCCAGGAACTGTCGCACTCCGTGAAATCAGGAAGTACCAGAAGAGCACTG
AGCTTCTTATTAGGAAGCTTCCGTTCCAGAGATTGGTGAGGGAAATCGCT
CAGGATTTCAAGACGGATCTGAGGTTCCAGAGCAGCGCTGTTGCTGCACT
TCAGGAGGCTGCTGAGGCTTATCTTGTTGGGCTGTTCGAGGACACCAACC
TCTGCGCTATTCATGCTAAGAGGGTCACTATTATGCCCAAGGACATTCAG
CTTGCTAGGCGGATCAGGGGTGAAAGGGCTTAGGAACTTTCTGATTTAAT
GTATTTTGTTCCTCTTACTTCGATGTTAGTCTTTTGGTCAATATTTGGGG
TTTAGATTTATTGTTTGGATGTCTATCCGATGGATTAGATCGGGTNNNGT
ATGTATCTAAGGTGTTTGTTAAAATGTTTTCGAGGGTTTTTAATCTAATA
GATAATTAGCCTTTTAATATTTTTTTGAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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