DR405861

Overview
NameDR405861
Unique NameDR405861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1492 contig Csv1_Contig1492:6..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR405861 vs. ExPASy Swiss-Prot
Match: H3_PARLI (Histone H3, embryonic OS=Paracentrotus lividus PE=2 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 4.203e-58
Identity = 116/136 (85.29%), Postives = 119/136 (87.50%), Query Frame = 1 
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405861 vs. ExPASy Swiss-Prot
Match: H3_LYTPI (Histone H3, embryonic OS=Lytechinus pictus PE=2 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 4.203e-58
Identity = 116/136 (85.29%), Postives = 119/136 (87.50%), Query Frame = 1 
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405861 vs. ExPASy Swiss-Prot
Match: H3_DERIM (Histone H3, embryonic OS=Dermasterias imbricata PE=2 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 4.203e-58
Identity = 116/136 (85.29%), Postives = 119/136 (87.50%), Query Frame = 1 
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405861 vs. ExPASy Swiss-Prot
Match: H331_CAEEL (Histone H3.3 type 1 OS=Caenorhabditis elegans GN=his-71 PE=2 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 4.203e-58
Identity = 116/136 (85.29%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405861 vs. ExPASy Swiss-Prot
Match: H32_CRILO (Histone H3.2 OS=Cricetulus longicaudatus PE=2 SV=3)

HSP 1 Score: 224.557 bits (571), Expect = 4.203e-58
Identity = 116/136 (85.29%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTV LREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVTLREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405861 vs. ExPASy Swiss-Prot
Match: H3_ACRFO (Histone H3 OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 7.169e-58
Identity = 116/136 (85.29%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAA KSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAAAKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405861 vs. ExPASy Swiss-Prot
Match: H33_PONAB (Histone H3.3 OS=Pongo abelii PE=2 SV=3)

HSP 1 Score: 223.402 bits (568), Expect = 9.363e-58
Identity = 115/136 (84.56%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRL REIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLAREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405861 vs. ExPASy Swiss-Prot
Match: H332_CAEEL (Histone H3.3 type 2 OS=Caenorhabditis elegans GN=his-72 PE=1 SV=3)

HSP 1 Score: 223.402 bits (568), Expect = 9.363e-58
Identity = 115/136 (84.56%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERA 136
[Close]
BLAST of DR405861 vs. ExPASy Swiss-Prot
Match: H31T_HUMAN (Histone H3.1t OS=Homo sapiens GN=HIST3H3 PE=1 SV=3)

HSP 1 Score: 221.861 bits (564), Expect = 2.724e-57
Identity = 114/136 (83.82%), Postives = 117/136 (86.03%), Query Frame = 1 
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATK ARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRL+REIAQDFKTDLRF                 GLFEDTNLC IHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKVARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVGLFEDTNLCVIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405861 vs. ExPASy Swiss-Prot
Match: H3_STRPU (Histone H3, embryonic OS=Strongylocentrotus purpuratus PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 3.558e-57
Identity = 115/136 (84.56%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRF                  LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVRLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of DR405861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3_PARLI4.203e-5885.29Histone H3, embryonic OS=Paracentrotus lividus PE=... [more]
H3_LYTPI4.203e-5885.29Histone H3, embryonic OS=Lytechinus pictus PE=2 SV... [more]
H3_DERIM4.203e-5885.29Histone H3, embryonic OS=Dermasterias imbricata PE... [more]
H331_CAEEL4.203e-5885.29Histone H3.3 type 1 OS=Caenorhabditis elegans GN=h... [more]
H32_CRILO4.203e-5885.29Histone H3.2 OS=Cricetulus longicaudatus PE=2 SV=3[more]
H3_ACRFO7.169e-5885.29Histone H3 OS=Acropora formosa PE=3 SV=2[more]
H33_PONAB9.363e-5884.56Histone H3.3 OS=Pongo abelii PE=2 SV=3[more]
H332_CAEEL9.363e-5884.56Histone H3.3 type 2 OS=Caenorhabditis elegans GN=h... [more]
H31T_HUMAN2.724e-5783.82Histone H3.1t OS=Homo sapiens GN=HIST3H3 PE=1 SV=3[more]
H3_STRPU3.558e-5784.56Histone H3, embryonic OS=Strongylocentrotus purpur... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247P05 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247P05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405861 ID=DR405861; Name=DR405861; organism=Citrus sinensis; type=EST; length=705bp
GGGGGATCTTTCAATTTTCATTCATATTTTAAGATCTCCCAAGAAAAAAG
AAACACTTAATTTCCCAAATCAATGGCCCGCACGAAGCAAACCGCTCGCA
AGTCCACCGGAGGCAAGGCCCCAAGAAAGCAACTGGCGACCAAGGCGGCA
AGGAAATCCGCACCGGCAACCGGAGGAGTGAAGAAGCCTCACAGGTTCCG
TCCAGGAACTGTCGCACTCCGTGAAATCAGGAAGTACCAGAAGAGCACTG
AGCTTCTTATTAGGAAGCTTCCGTTCCAGAGATTGGTGAGGGAAATCGCT
CAGGATTTCAAGACGGATCTGAGGTTCCAGAGCAGCGCTGTTGCTGCACT
TCAGGAGGCTGCTGAGGCTTATCTTGTTGGGCTGTTCGAGGACACCAACC
TCTGCGCTATTCATGCTAAGAGGGTCACTATTATGCCCAAGGACATTCAG
CTTGCTAGGCGGATCAGGGGTGAAAGGGCTTAGGAACTTTCTGATTTAAT
GTATTTTGTTCCTCTTACTTCGATGTTAGTCTTTTGGTCAATATTTGGGG
TTTAGATTTATTGTTTGGATGTCTATCCGATGGATTAGATCGGGTNNNGT
ATGTATCTAAGGTGTTTGTTAAAATGTTTTCGAGGGTTTTTAATCTAATA
GATAATTAGCCTTTTAATATTTTTTTGAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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