DR405856

Overview
NameDR405856
Unique NameDR405856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405856 vs. ExPASy Swiss-Prot
Match: IDI1_AZOSE (Isopentenyl-diphosphate Delta-isomerase 1 OS=Azoarcus sp. (strain EbN1) GN=idi1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.650e-19
Identity = 61/159 (38.36%), Postives = 83/159 (52.20%), Query Frame = 3
Query:  285 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI-CAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYV 758
            ED+ ILVDEND  +G E K   H          LHRA S+F+F+S   LLLQ+R+ +K     +W+NTCCSHP  RE             AA+R+L +E+GI C  DV           +Y+A       E+E D++ F   D    PNPDE  ++K+V
Sbjct:    2 EDQVILVDENDTEIGVEGKMIAHRSGS------LHRAISIFIFDSADRLLLQKRAASKYHSAGLWSNTCCSHPRPREE---------CARAARRRLREEMGIACELDVKFG-------FVYRAVLTNHLIENEFDHVFFGRHDGDPVPNPDEAEDWKWV 138          
BLAST of DR405856 vs. ExPASy Swiss-Prot
Match: IDI_NOCFA (Isopentenyl-diphosphate Delta-isomerase OS=Nocardia farcinica GN=idi PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.789e-18
Identity = 62/155 (40.00%), Postives = 81/155 (52.26%), Query Frame = 3
Query:  300 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG--EHELDYLLFIVRDVSVNPNPDEVAEYKYV 758
            LVDE  R VG      C + E       LHRAFSV LF++   +LLQQR+  K  FPL+W NTCC HP   ES         V  AA  +L +ELG+ A        T +G   Y+A +D   G  EHE D++L    D + +P+P EVA  ++V
Sbjct:    5 LVDEAGRAVGA-----CPVAEAHRDPGKLHRAFSVLLFDTAGRVLLQQRAAVKTRFPLLWANTCCGHPAPGES---------VEAAAATRLAEELGVAA------GLTEVGVFRYRA-ADTATGRVEHEWDHVLIGTLDTTPHPDPAEVANLRWV 138          
BLAST of DR405856 vs. ExPASy Swiss-Prot
Match: IDI_SERP5 (Isopentenyl-diphosphate Delta-isomerase OS=Serratia proteamaculans (strain 568) GN=idi PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.255e-18
Identity = 57/157 (36.31%), Postives = 82/157 (52.23%), Query Frame = 3
Query:  285 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 755
            ++  ILVD +D  +G ++K   H         LLHRAFS+F+F+S+  LLLQQR+ +K     +WTN+CC HP + ES L          AAQR+L +E+G  AE   V  FT      Y+A   G   EHE D++   + D      P+E   + +
Sbjct:    2 DEMLILVDADDNAIGSQSKTRVHQQ------GLLHRAFSIFIFDSQGRLLLQQRAFSKYHSAGLWTNSCCGHPRWGESTLA---------AAQRRLQEEMGFSAELQQVSSFT------YQAAVPGDLIEHEFDHIYVGLFDGKPQGAPEEAHSWSW 137          
BLAST of DR405856 vs. ExPASy Swiss-Prot
Match: IDI2_AZOSE (Isopentenyl-diphosphate Delta-isomerase 2 OS=Azoarcus sp. (strain EbN1) GN=idi2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.855e-16
Identity = 55/158 (34.81%), Postives = 78/158 (49.37%), Query Frame = 3
Query:  285 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYV 758
            ED+ ILVDE+D  VG   K   H          LHRA S+F+F+S   L+LQ+R+  K     +W+NTCCSHP   E            +AA+R+L +E+G+  E      F      +Y+        EHE D++ F   D     NPDE  ++K+V
Sbjct:    2 EDQVILVDEHDNKVGFAGKMAAH------QRGALHRAISIFVFDSHSRLMLQRRAAGKYHSGGLWSNTCCSHPRPNEES---------ADAARRRLREEMGVDCELKKAFSF------VYRTKFGSGLIEHEFDHVFFGNHDGRPVLNPDEADDWKWV 138          
BLAST of DR405856 vs. ExPASy Swiss-Prot
Match: IDI1_PHOLL (Isopentenyl-diphosphate Delta-isomerase 1 OS=Photorhabdus luminescens subsp. laumondii GN=idi1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.304e-15
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 3
Query:  288 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 743
            +  +LVDEND  VG  NK + HL     + + LHRAFS F+ NSK E+ +QQR+ +K+ +P  W+N+ CSHP   E          + +A  R+  +ELGI   + P  +F  L +  YK        EHEL ++  +  D     NP EV+
Sbjct:    2 ENVVLVDENDNRVGCINKIDAHL-----NGDHLHRAFSCFIINSKNEVYIQQRAQSKLLWPGYWSNSYCSHPRPDEE---------ISHAVMRRAEEELGIVINEEP--KF--LYKFQYKEKYKDVGYEHELCHVFVVFTDTPPTENPKEVS 135          
BLAST of DR405856 vs. ExPASy Swiss-Prot
Match: IDI_BURM1 (Isopentenyl-diphosphate Delta-isomerase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=idi PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.703e-15
Identity = 56/158 (35.44%), Postives = 84/158 (53.16%), Query Frame = 3
Query:  285 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYV 758
            E+  ILVD +DR +G   K   H         LLHRAFS+F+F+S   LLLQQR+  K     +W+NTCC HP  RE+         + +A +R+L +E+G   E  PVD       ++Y+A  +    EHE  ++     D +V P+  EVA ++++
Sbjct:    2 EERLILVDTDDRPIGICEKMRAH------HEGLLHRAFSIFVFDSAGRLLLQQRALNKYHSGGLWSNTCCGHPRPREA---------LPDAVRRRLGEEMGFACELRPVD------ALVYRARFENDLIEHEFVHIHVGRFDGTVAPDFAEVAAWRWI 138          
BLAST of DR405856 vs. ExPASy Swiss-Prot
Match: IDI_PHOPR (Isopentenyl-diphosphate Delta-isomerase OS=Photobacterium profundum GN=idi PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.454e-15
Identity = 53/164 (32.32%), Postives = 86/164 (52.44%), Query Frame = 3
Query:  276 LMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFI-VRDVSVNPNPDEVAEYKY 755
            ++ E++ +LVD+  R +G + K   H          LH AFSV L+       E L+QQR+  K     +WTNTCCSHP  R+ E +E+       A  R+L +E+GI    V ++    +   +Y+A  D +  EHE D++L     ++++ PN +EV  Y++
Sbjct:    1 MIIEEQVVLVDQQGRALGLQEKMQAHRD------GALHLAFSVLLYRETTQGIEFLMQQRALGKYHSGGLWTNTCCSHP--RQGETLEQ-------AGLRRLTEEMGI----VGLESLDDIASFVYRAELDNQLIEHEWDHVLIANGTELAIIPNSEEVKSYRW 145          
BLAST of DR405856 vs. ExPASy Swiss-Prot
Match: IDI2_PHOLL (Isopentenyl-diphosphate Delta-isomerase 2 OS=Photorhabdus luminescens subsp. laumondii GN=idi2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.454e-15
Identity = 54/154 (35.06%), Postives = 82/154 (53.25%), Query Frame = 3
Query:  297 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYV 758
            +LVD++D  +G   K + H         +LHRAFS+F+F++K  LLLQ+R+ TK     +WTN+CC HP  R  E +E        AA R+L +E+G    D P+ +   +   +Y A       E+E D++     D     N DEV++YK+V
Sbjct:    6 VLVDKHDNPIGSAGKADIH------QKGMLHRAFSIFVFDNKGNLLLQKRAATKYHSAGLWTNSCCGHP--RVGEALEA-------AAHRRLGEEMGF---DCPLKK---VSSFIYHAILPNNLIEYEYDHVFIGRFDKEPIINLDEVSDYKWV 138          
BLAST of DR405856 vs. ExPASy Swiss-Prot
Match: IDI_VIBFM (Isopentenyl-diphosphate Delta-isomerase OS=Vibrio fischeri (strain MJ11) GN=idi PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.480e-14
Identity = 57/157 (36.31%), Postives = 79/157 (50.32%), Query Frame = 3
Query:  297 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFI-VRDVSVNPNPDEVAEYKY 755
            +LV+E    +G   K   H  EK     LLH AFSV L+       E LLQ+R+  K      W+NTCCSHP   E+         V  A  R+L +E+GI    V  ++F  LG  +Y+A  +    EHE DY+L     DVS   NP+EV++ ++
Sbjct:    6 VLVNEQGDAIGTMEKLEAH--EK----GLLHLAFSVLLYRETDLGKEFLLQKRAECKYHSKNKWSNTCCSHPRVNEN---------VEAAGTRRLNEEIGITG--VLPEQFVNLGWFIYQAELENGLSEHEQDYILIANTPDVSFILNPEEVSDIQW 145          
BLAST of DR405856 vs. ExPASy Swiss-Prot
Match: IDI_VIBF1 (Isopentenyl-diphosphate Delta-isomerase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=idi PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.157e-14
Identity = 57/157 (36.31%), Postives = 79/157 (50.32%), Query Frame = 3
Query:  297 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFI-VRDVSVNPNPDEVAEYKY 755
            +LV+E    +G   K   H  EK     LLH AFSV L+       E LLQ+R+  K      W+NTCCSHP   E+         V  A  R+L +E+GI    V  ++F  LG  +Y+A  +    EHE DY+L     DVS   NP+EV++ ++
Sbjct:    6 VLVNEQGDAIGTMEKLEAH--EK----GLLHLAFSVLLYRETDLGKEFLLQKRAECKYHSKNKWSNTCCSHPRVNEN---------VEVAGTRRLNEEIGITG--VLPEQFVNLGWFIYQAELENGLSEHEQDYILIANTPDVSFILNPEEVSDIQW 145          
The following BLAST results are available for this feature:
BLAST of DR405856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
IDI1_AZOSE9.650e-1938.36Isopentenyl-diphosphate Delta-isomerase 1 OS=Azoar... [more]
IDI_NOCFA4.789e-1840.00Isopentenyl-diphosphate Delta-isomerase OS=Nocardi... [more]
IDI_SERP56.255e-1836.31Isopentenyl-diphosphate Delta-isomerase OS=Serrati... [more]
IDI2_AZOSE5.855e-1634.81Isopentenyl-diphosphate Delta-isomerase 2 OS=Azoar... [more]
IDI1_PHOLL1.304e-1536.18Isopentenyl-diphosphate Delta-isomerase 1 OS=Photo... [more]
IDI_BURM11.703e-1535.44Isopentenyl-diphosphate Delta-isomerase OS=Burkhol... [more]
IDI_PHOPR8.454e-1532.32Isopentenyl-diphosphate Delta-isomerase OS=Photoba... [more]
IDI2_PHOLL8.454e-1535.06Isopentenyl-diphosphate Delta-isomerase 2 OS=Photo... [more]
IDI_VIBFM5.480e-1436.31Isopentenyl-diphosphate Delta-isomerase OS=Vibrio ... [more]
IDI_VIBF17.157e-1436.31Isopentenyl-diphosphate Delta-isomerase OS=Vibrio ... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247O14 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247O14 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405856 ID=DR405856; Name=DR405856; organism=Citrus sinensis; type=EST; length=758bp
GGGGTTGCCATATTGAGGTCCCAATGTCTACTACTACGCTTTATAACTGC
GCCACAACCAAACTCTGCTCCTCACTAATCAACAACTCTTCTTCTTTCTC
GAAGTCCCGTCTATTTTTCTCCTCTTCCCATTTCGCCCCTAGGGTTTCTT
CGATTCGCAGGCCTCTGTCCTTGGGAGGTGCCTCTCGTTCTAGCTCTTCT
TCTTCTTCCGCTCGCGCAATCAGCACTATGGGTGACGCTACTACTGATGC
CGGCATGGACGCTGTCCAGCGCCGCCTCATGTTTGAAGACGAATGCATTT
TGGTGGATGAGAATGATCGCGTTGTTGGTCATGAAAACAAATACAACTGT
CACTTGATGGAAAAGATTGAGTCTTTGAATTTGCTACACAGAGCCTTCAG
CGTATTTTTGTTTAACTCAAAATATGAGCTACTCCTTCAGCAACGCTCTG
GAACCAAAGTTACCTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCAT
CCTCTGTACCGTGAATCTGAGCTTATTGAGGAGAACGCTCTTGGGGTGAG
GAATGCTGCACAAAGAAAGCTTTTGGATGAGCTGGGCATTTGTGCTGAAG
ATGTGCCAGTTGATGAGTTCACTCCACTGGGTCGCATTCTGTACAAGGCC
CCTTCTGATGGCAAGTGGGGGGAGCATGAACTTGACTACTTACTTTTCAT
TGTCCGAGATGTTAGTGTTAACCCAAATCCTGATGAAGTAGCCGAGTATA
AATATGTC
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