DR405856

Overview
NameDR405856
Unique NameDR405856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405856 vs. ExPASy Swiss-Prot
Match: IDI_STRCO (Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces coelicolor GN=idi PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 53/154 (34.42%), Postives = 72/154 (46.75%), Query Frame = 3
Query:  300 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGK-WGEHELDYLLFIVRDVSVNPNPDEVAEYKYV 758
            LVDEN   +G   K + H     +    LHRAFSVFLF+ +  LL+QQR+  K   P VW+NTCC HP   E+            AA R+  +ELG     V        G + Y  P       E E ++L   +    + P+P+EVA   +V
Sbjct:   24 LVDENGVTIGTAEKLSAH-----QPPGRLHRAFSVFLFDERGRLLIQQRALGKYHSPGVWSNTCCGHPYPGEAPFA---------AAARRTFEELG-----VSPSLLAEAGTVRYNHPDPASGLVEQEYNHLFVGLVQAELRPDPEEVAGTAFV 158          
BLAST of DR405856 vs. ExPASy Swiss-Prot
Match: IDI_STRGG (Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=idi PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.059e-13
Identity = 52/154 (33.77%), Postives = 72/154 (46.75%), Query Frame = 3
Query:  300 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGK-WGEHELDYLLFIVRDVSVNPNPDEVAEYKYV 758
            LVDEN   +G   K   H     ++   LHRAFSVFLF+ +  LLLQ+R+  K   P VW+NTCC HP   E+            AA R+  +ELG+             G + Y  P       E E ++L   +   +  P+P+EV E  +V
Sbjct:   24 LVDENGTTIGTAEKLAAH-----QAPGQLHRAFSVFLFDEQGRLLLQRRALGKYHSPGVWSNTCCGHPYPGEAPFA---------AAARRTHEELGLSP-----SLLAEAGTVRYNHPDPASGLVEQEFNHLFVGLAQTAPKPDPEEVGETAFV 158          
BLAST of DR405856 vs. ExPASy Swiss-Prot
Match: IDI_SACEN (Isopentenyl-diphosphate Delta-isomerase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=idi PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.033e-12
Identity = 48/152 (31.58%), Postives = 79/152 (51.97%), Query Frame = 3
Query:  288 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 743
            ++ +L++++ + +G  +K   H ++       LH AFS ++FN + +LLL QR+  K T+P VWTNTCC HP  +E+         +  A  R+L +ELG+   D+ +     L R  Y+A       E+E+  +     D    PN +EVA
Sbjct:    2 EQVVLLNDSGQAIGVTDKATVHHLD-----TPLHLAFSCYVFNGRGQLLLTQRAHEKRTWPGVWTNTCCGHPAPQEA---------MPEAITRRLGEELGLTVRDLTL----VLPRFRYRAVMGNGVVENEICPVFAAFTDDEPAPNREEVA 135          
BLAST of DR405856 vs. ExPASy Swiss-Prot
Match: IDI_HALHL (Isopentenyl-diphosphate Delta-isomerase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=idi PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 54/150 (36.00%), Postives = 72/150 (48.00%), Query Frame = 3
Query:  288 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYL-LFIVRDVSVNPNPD 734
            +  ++VD   + VG E K   H          LH AF VF+FN + ELLLQ+R+ +K  F  +W+NTCC HP   E         GV  AA+R+L +E G      PV +FT      Y A  D   G  E +Y  + I R  +  P PD
Sbjct:    2 EHVVIVDPEGQRVGTEEKIRAHA-----DGGTLHLAFCVFVFNPRGELLLQRRADSKYHFSGLWSNTCCGHPRPGE---------GVTEAAERRLGEEFGFVTRLHPVAQFT------YHA-EDHHTGLAEYEYAHVLIGRAPTDQPAPD 130          
BLAST of DR405856 vs. ExPASy Swiss-Prot
Match: IDI_STRAW (Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces avermitilis GN=idi PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 52/154 (33.77%), Postives = 71/154 (46.10%), Query Frame = 3
Query:  300 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS-DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYV 758
            LVDEN   +G   K   H     +    LHRAFSVFLF+ +  LLLQQR+  K   P VW+NTCC HP   E+            AA R+  +ELG     V        G + Y  P  D    E E ++L   +    + P+ +E+ +  +V
Sbjct:   24 LVDENGTTIGTAEKLAAH-----QPPGQLHRAFSVFLFDEQGRLLLQQRALGKYHSPGVWSNTCCGHPYPGEAPFA---------AAARRTHEELG-----VSPSLLAEAGTVRYNHPDPDSGLVEQEFNHLFVGLVQSPLRPDAEEIGDTAFV 158          
BLAST of DR405856 vs. ExPASy Swiss-Prot
Match: IDI_KLEP7 (Isopentenyl-diphosphate Delta-isomerase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=idi PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.492e-11
Identity = 58/162 (35.80%), Postives = 84/162 (51.85%), Query Frame = 3
Query:  279 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV-PVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYKYV 758
            M  +  IL+DE D+  G   KY  H  +       LH AFS +LFN + +LL+ +RS  K  +P VWTN+ C HP  ++ E  E+       A  R+   ELG+   D+ PV    P  R  Y+A +     E+E+   ++  R VS V PN DEV +Y++V
Sbjct:    1 MAGEHVILLDEQDQPAGMLEKYAAHTFD-----TPLHLAFSCWLFNQQGQLLVTRRSLGKKAWPGVWTNSVCGHP--QQGETFEQ-------AVTRRCRFELGVEISDIAPVH---PAFR--YRAVAPNGIVENEV-CPVYAARVVSEVQPNDDEVMDYQWV 142          
BLAST of DR405856 vs. ExPASy Swiss-Prot
Match: IDI_KLEP3 (Isopentenyl-diphosphate Delta-isomerase OS=Klebsiella pneumoniae (strain 342) GN=idi PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 55/161 (34.16%), Postives = 82/161 (50.93%), Query Frame = 3
Query:  279 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYKYV 758
            M  +  IL+DE D+  G   KY  H ++       LH AFS +LFN + + L+ +RS  K  +P VWTN+ C HP  ++ E  E+       A  R+   ELG+  E   +    P  R  Y+A +     E+E+   ++  R VS V PN DEV +Y++V
Sbjct:    1 MAGEHVILLDEQDQPAGMLEKYAAHTLD-----TPLHLAFSCWLFNQQGQFLVTRRSLGKKAWPGVWTNSVCGHP--QQGETFEQ-------AVTRRCRFELGV--EIADIAPIHPAFR--YRAVAPNGIVENEV-CPVYAARVVSQVQPNDDEVMDYQWV 142          
The following BLAST results are available for this feature:
BLAST of DR405856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
IDI_STRCO3.552e-1334.42Isopentenyl-diphosphate Delta-isomerase OS=Strepto... [more]
IDI_STRGG6.059e-1333.77Isopentenyl-diphosphate Delta-isomerase OS=Strepto... [more]
IDI_SACEN1.033e-1231.58Isopentenyl-diphosphate Delta-isomerase OS=Sacchar... [more]
IDI_HALHL2.302e-1236.00Isopentenyl-diphosphate Delta-isomerase OS=Halorho... [more]
IDI_STRAW3.927e-1233.77Isopentenyl-diphosphate Delta-isomerase OS=Strepto... [more]
IDI_KLEP71.492e-1135.80Isopentenyl-diphosphate Delta-isomerase OS=Klebsie... [more]
IDI_KLEP34.342e-1134.16Isopentenyl-diphosphate Delta-isomerase OS=Klebsie... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247O14 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247O14 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405856 ID=DR405856; Name=DR405856; organism=Citrus sinensis; type=EST; length=758bp
GGGGTTGCCATATTGAGGTCCCAATGTCTACTACTACGCTTTATAACTGC
GCCACAACCAAACTCTGCTCCTCACTAATCAACAACTCTTCTTCTTTCTC
GAAGTCCCGTCTATTTTTCTCCTCTTCCCATTTCGCCCCTAGGGTTTCTT
CGATTCGCAGGCCTCTGTCCTTGGGAGGTGCCTCTCGTTCTAGCTCTTCT
TCTTCTTCCGCTCGCGCAATCAGCACTATGGGTGACGCTACTACTGATGC
CGGCATGGACGCTGTCCAGCGCCGCCTCATGTTTGAAGACGAATGCATTT
TGGTGGATGAGAATGATCGCGTTGTTGGTCATGAAAACAAATACAACTGT
CACTTGATGGAAAAGATTGAGTCTTTGAATTTGCTACACAGAGCCTTCAG
CGTATTTTTGTTTAACTCAAAATATGAGCTACTCCTTCAGCAACGCTCTG
GAACCAAAGTTACCTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCAT
CCTCTGTACCGTGAATCTGAGCTTATTGAGGAGAACGCTCTTGGGGTGAG
GAATGCTGCACAAAGAAAGCTTTTGGATGAGCTGGGCATTTGTGCTGAAG
ATGTGCCAGTTGATGAGTTCACTCCACTGGGTCGCATTCTGTACAAGGCC
CCTTCTGATGGCAAGTGGGGGGAGCATGAACTTGACTACTTACTTTTCAT
TGTCCGAGATGTTAGTGTTAACCCAAATCCTGATGAAGTAGCCGAGTATA
AATATGTC
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