DR405849

Overview
NameDR405849
Unique NameDR405849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR405849_ssr195 microsatellite DR405849_ssr195:195..206. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6299 contig Csv1_Contig6299:1..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405849 vs. ExPASy Swiss-Prot
Match: IDI1_PONAB (Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo abelii GN=IDI1 PE=2 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 8.611e-43
Identity = 94/163 (57.67%), Postives = 115/163 (70.55%), Query Frame = 3
Query:  228 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS 716
            M +  TD  +D  Q +L+ E  CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+T P  +TNTCCSHPL    EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG WGEHE+DY+L + ++V+
Sbjct:    1 MPEINTDH-LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITLPGCFTNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVT 160          
BLAST of DR405849 vs. ExPASy Swiss-Prot
Match: IDI1_RAT (Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattus norvegicus GN=Idi1 PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.243e-41
Identity = 86/156 (55.13%), Postives = 114/156 (73.08%), Query Frame = 3
Query:  249 AGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS 716
            + +D  Q +L+ E  CIL+DEND  +G + K NCHL E I+   L+HRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E +A+GV+ AAQR+L  ELGI  E+V ++E   L RI YKA SDG WGEHE+DY+LF+ ++V+
Sbjct:    7 SNLDEKQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLIHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLNNPGELEENDAMGVKRAAQRRLKAELGIPLEEVDLNEMNYLTRIYYKAQSDGIWGEHEIDYILFLRKNVT 160          
BLAST of DR405849 vs. ExPASy Swiss-Prot
Match: IDI1_MOUSE (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus musculus GN=Idi1 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.243e-41
Identity = 87/154 (56.49%), Postives = 113/154 (73.38%), Query Frame = 3
Query:  255 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS 716
            +D  Q +L+ E  CIL+DEND  +G + K NCHL E I+   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E NA+GV+ AA+R+L  ELGI  E+V ++E   L RI YKA SDG WGEHE+DY+LF+ ++V+
Sbjct:    9 LDEKQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGELEENNAIGVKRAAKRRLKAELGIPLEEVDLNEMDYLTRIYYKAQSDGIWGEHEVDYILFLRKNVT 160          
BLAST of DR405849 vs. ExPASy Swiss-Prot
Match: IDI1_MESAU (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus GN=IDI1 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.770e-41
Identity = 87/154 (56.49%), Postives = 112/154 (72.73%), Query Frame = 3
Query:  255 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS 716
            +D  Q +L+ E  CIL+DEND  +G + K NCHL E I+   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E +A+GV+ AAQR+L  ELGI  E+V  +E   L RI YKA SDG WGEHE+DY+LF+ ++V+
Sbjct:    9 LDEQQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGELEENDAIGVKRAAQRRLKAELGIPLEEVDPNEMHYLTRIYYKAQSDGIWGEHEIDYILFLKKNVT 160          
BLAST of DR405849 vs. ExPASy Swiss-Prot
Match: IDI1_PHARH (Isopentenyl-diphosphate Delta-isomerase OS=Phaffia rhodozyma GN=IDI PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.287e-38
Identity = 86/149 (57.72%), Postives = 102/149 (68.46%), Query Frame = 3
Query:  258 DAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIES-LNLLHRAFSVFLFN-SKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLF 698
            D  Q RLM E+ CILV+ +D   G  +K  CHLM  I +  +LLHRAFSVFLF  S   LLLQ+R+  K+TFP +WTNTCCSHPL  + E+ EEN +GVR AA RKL  ELG+     P D FT L RI Y APSDG WGEHE+DY+LF
Sbjct:   23 DEEQVRLM-EERCILVNPDDVAYGEASKKTCHLMSNINAPKDLLHRAFSVFLFRPSDGALLLQRRADEKITFPGMWTNTCCSHPLSIKGEVKEENQIGVRRAASRKLEHELGVPTSSTPPDSFTYLTRIHYLAPSDGLWGEHEIDYILF 170          
BLAST of DR405849 vs. ExPASy Swiss-Prot
Match: IDI1_SCHPO (Isopentenyl-diphosphate Delta-isomerase OS=Schizosaccharomyces pombe GN=idi1 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.890e-38
Identity = 85/150 (56.67%), Postives = 103/150 (68.67%), Query Frame = 3
Query:  258 DAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE---LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLF 698
            D  Q RLM E+ CI+VDEND  + +  K  CHLME I    LLHRAFS+F+F+ +  LLLQQR+  K+TFP +WTNTCCSHPL    E    + E   GV+NAAQRKL  ELGI A+ +P D+F  L RI Y APS G WGEHE+DY+LF
Sbjct:   11 DEEQLRLM-EEVCIVVDENDVPLRYGTKKECHLMENINK-GLLHRAFSMFIFDEQNRLLLQQRAEEKITFPSLWTNTCCSHPLDVAGERGNTLPEAVEGVKNAAQRKLFHELGIQAKYIPKDKFQFLTRIHYLAPSTGAWGEHEIDYILF 158          
BLAST of DR405849 vs. ExPASy Swiss-Prot
Match: IDI2_HUMAN (Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo sapiens GN=IDI2 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.139e-37
Identity = 82/160 (51.25%), Postives = 111/160 (69.38%), Query Frame = 3
Query:  243 TDAGMDAVQRRLM--FEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS 716
            +D  +D V RR +   E+  I+VDEND+V+G + K NCHL E IE   LLHRAFSV LFN+K  +L+QQRS TKVTFP  +T++C SHPLY  +EL E++A+GVR AAQR+L  ELGI  E +  ++   +    +KA SD  WGEHE+ YLL + ++V+
Sbjct:    2 SDINLDWVDRRQLQRLEEMLIVVDENDKVIGADTKRNCHLNENIEK-GLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVT 160          
BLAST of DR405849 vs. ExPASy Swiss-Prot
Match: IDI_DICDI (Isopentenyl-diphosphate Delta-isomerase OS=Dictyostelium discoideum GN=ipi PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.511e-34
Identity = 79/156 (50.64%), Postives = 111/156 (71.15%), Query Frame = 3
Query:  252 GMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLY-RESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS--DGKWGEHELDYLLFIVRD 710
            G + +Q  LM ++ECI+VD +D+ +   +K   HLM  I +  LLHRAFS+FLFN + +LLLQQR+  K+TFP  WTNT CSHPL+   SEL+EENA GV+ AA+RKL  ELG+  + V +D+FT + +I YK+ S  D +WGEHE+D++L + +D
Sbjct:   15 GHNEIQIELM-KEECIVVDNDDKPIRPGSKKETHLMVNINN-GLLHRAFSIFLFNGEGKLLLQQRALEKITFPGYWTNTVCSHPLWIVGSELVEENAQGVKIAAKRKLNHELGVPLDQVNIDDFTFMTKIHYKSESKEDPQWGEHEIDHILIMQKD 168          
BLAST of DR405849 vs. ExPASy Swiss-Prot
Match: IDI1_YEAST (Isopentenyl-diphosphate Delta-isomerase OS=Saccharomyces cerevisiae GN=IDI1 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.777e-33
Identity = 81/159 (50.94%), Postives = 103/159 (64.78%), Query Frame = 3
Query:  240 TTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESEL-----IEENALGVRNAAQRKLLDELGICAEDVPV-DEFTPLGRILYKAPSDGKWGEHELDYLLF 698
            T  +G D  Q +LM E+ CI++D +D  +G   K  CHLME IE   LLHRAFSVF+FN + ELLLQQR+  K+TFP +WTNTCCSHPL  + EL     +++   G   AA RKL  ELGI  ++     +F  L RI Y APS+  WGEHE+DY+LF
Sbjct:   57 TCFSGHDEEQIKLMNEN-CIVLDWDDNAIGAGTKKVCHLMENIEK-GLLHRAFSVFIFNEQGELLLQQRATEKITFPDLWTNTCCSHPLCIDDELGLKGKLDDKIKGAITAAVRKLDHELGIPEDETKTRGKFHFLNRIHYMAPSNEPWGEHEIDYILF 213          
BLAST of DR405849 vs. ExPASy Swiss-Prot
Match: IDI_SERP5 (Isopentenyl-diphosphate Delta-isomerase OS=Serratia proteamaculans (strain 568) GN=idi PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.136e-17
Identity = 54/136 (39.71%), Postives = 75/136 (55.15%), Query Frame = 3
Query:  285 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYL 692
            ++  ILVD +D  +G ++K   H         LLHRAFS+F+F+S+  LLLQQR+ +K     +WTN+CC HP + ES L          AAQR+L +E+G  AE   V  FT      Y+A   G   EHE D++
Sbjct:    2 DEMLILVDADDNAIGSQSKTRVHQQ------GLLHRAFSIFIFDSQGRLLLQQRAFSKYHSAGLWTNSCCGHPRWGESTLA---------AAQRRLQEEMGFSAELQQVSSFT------YQAAVPGDLIEHEFDHI 116          
The following BLAST results are available for this feature:
BLAST of DR405849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
IDI1_PONAB8.611e-4357.67Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo... [more]
IDI1_RAT1.243e-4155.13Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattu... [more]
IDI1_MOUSE1.243e-4156.49Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus m... [more]
IDI1_MESAU2.770e-4156.49Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesoc... [more]
IDI1_PHARH1.287e-3857.72Isopentenyl-diphosphate Delta-isomerase OS=Phaffia... [more]
IDI1_SCHPO4.890e-3856.67Isopentenyl-diphosphate Delta-isomerase OS=Schizos... [more]
IDI2_HUMAN4.139e-3751.25Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo ... [more]
IDI_DICDI2.511e-3450.64Isopentenyl-diphosphate Delta-isomerase OS=Dictyos... [more]
IDI1_YEAST2.777e-3350.94Isopentenyl-diphosphate Delta-isomerase OS=Sacchar... [more]
IDI_SERP52.136e-1739.71Isopentenyl-diphosphate Delta-isomerase OS=Serrati... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247O02 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247O02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405849 ID=DR405849; Name=DR405849; organism=Citrus sinensis; type=EST; length=716bp
GGGGTTGCCATATTGAGGTCCCAATGTCTACTACTACGCTTTATAACTGC
GCCACAACCAAACTCTGCTCCTCACTAATCAACAACTCTTCTTCTTTCTC
GAAGTCCCGTCTATTTTTCTCCTCTTCCCATTTCGCCCCTAGGGTTTCTT
CGATTCGCAGGCCTCTGTCCTTGGGAGGTGCCTCTCGTTCTAGCTCTTCT
TCTTCTTCCGCTCGCGCAATCAGCACTATGGGTGACGCTACTACTGATGC
CGGCATGGACGCTGTCCAGCGCCGCCTCATGTTTGAAGACGAATGCATTT
TGGTGGATGAGAATGATCGCGTTGTTGGTCATGAAAACAAATACAACTGT
CACTTGATGGAAAAGATTGAGTCTTTGAATTTGCTACACAGAGCCTTCAG
CGTATTTTTGTTTAACTCAAAATATGAGCTACTCCTTCAGCAACGCTCTG
GAACCAAAGTTACCTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCAT
CCTCTGTACCGTGAATCTGAGCTTATTGAGGAGAACGCTCTTGGGGTGAG
GAATGCTGCACAAAGAAAGCTTTTGGATGAGCTGGGCATTTGTGCTGAAG
ATGTGCCAGTTGATGAGTTCACTCCACTGGGTCGCATTCTGTACAAGGCC
CCTTCTGATGGCAAGTGGGGGGAGCATGAACTTGACTACTTACTTTTCAT
TGTCCGAGATGTTAGT
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