DR405847

Overview
NameDR405847
Unique NameDR405847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9884 contig Csv1_Contig9884:1..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405847 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.127e-17
Identity = 47/67 (70.15%), Postives = 52/67 (77.61%), Query Frame = 3
Query:  519 SLIHAQSILAIWACQVVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 710
            +LIHA+S+LAI A QV+LMGAVEGYR    A G  GE  D LYPGG FDPLGLADDP+ F ELKVKE
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKE 70          
BLAST of DR405847 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.525e-15
Identity = 62/149 (41.61%), Postives = 75/149 (50.34%), Query Frame = 3
Query:  264 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGAKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPL---GEVTDPLYPGGSFDPLGLADDPEAFAELK 701
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL  NGA F   +W K     F                    A+ A QVV    +E +R  GG L    E  D  YPG  FDPL L  +    AE+K
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLG-NGAWF--QIWDKVDFNRF--------------------AVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTEYTKEAEIK 501          

HSP 2 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 55/152 (36.18%), Postives = 74/152 (48.68%), Query Frame = 3
Query:  255 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGAKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG---PLGEVTDPLYPGGSFDPLGLADDPEAFAELK 701
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +                    L +    + +    E +R  GG     GE+ D  YPG  FDPL L  D    AE+K
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGEL-DRSYPG--FDPLNLTTDYTRAAEVK 316          

HSP 3 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 52/148 (35.14%), Postives = 73/148 (49.32%), Query Frame = 3
Query:  267 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGAKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVTDP--LYPGGSFDPLGLADDPEAFAELK 701
            PS+L GE+ GD G+D AGL+ADP+TF + R  EV H R AML  +G + P+ L       G+ +W++A                          I   +V +  A  G + +A G + E +DP  +YPG  FDPL L  D    AE+K
Sbjct:   12 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL-------GKGIWYEAAQN---------------------AGIGLKEVAIFTAAYGVFEVARG-VKENSDPTTIYPG--FDPLNLTTDYTKEAEIK 128          
BLAST of DR405847 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 70/212 (33.02%), Postives = 95/212 (44.81%), Query Frame = 3
Query:  159 GGRISMRKTASKSV---SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGAKFGEA--VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKE 710
            G RIS   T   S    ++ +P       + L   S +  SYL G  PGD+G+D  GLS DPE    F + + L   EVI+ R+AMLGA G + PE+L + G    E    WF+ G  I   G  +Y  +           ++  ++ LMG  E  R                     LG   DP YPGG  F+PLG   D ++  ELK+KE
Sbjct:   24 GSRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKE 225          
BLAST of DR405847 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 70/204 (34.31%), Postives = 95/204 (46.57%), Query Frame = 3
Query:  174 MRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLARNGAKFGEA--VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGE------------VTDPLYPGGS-FDPLGLADDPEAFAELKVKE 710
            +R  A+  V  G    G DR  +    S +  SYL G  PGDYG+D  GLS DPE    F + R L   EVI+ R+AMLGA+G + PE L + G    E    WF+ G  I   G  +Y  +           ++  ++ LMG  E  R       G +G+              +P YPGG  F+PLG   D ++  ELK+KE
Sbjct:   40 VRAAATPPVKQG----GVDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKE 227          
BLAST of DR405847 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 50/144 (34.72%), Postives = 68/144 (47.22%), Query Frame = 3
Query:  267 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGAKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEA 686
            P YLTG   GD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+  + G       W+ AG  Q F+     ++    L H   I   W   +   G+V     ++    P GEV    YPGG F+PL  A   EA
Sbjct:   64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVG---YPGGIFNPLNFAPTQEA 201          
The following BLAST results are available for this feature:
BLAST of DR405847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB21_EUGGR2.127e-1770.15Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
LH18_EUGGR1.525e-1541.61Light-harvesting complex I LH38 proteins (Fragment... [more]
CB13_SOLLC2.061e-1233.02Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA2.691e-1234.31Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB24_ARATH8.658e-1134.72Chlorophyll a-b binding protein 4, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247N24 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247N24 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405847 ID=DR405847; Name=DR405847; organism=Citrus sinensis; type=EST; length=711bp
GGGAACCAACAGCTTCTCTTGCTTACACAGCTTCTCTTGCTTACCCAGCT
TCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCGACAATGGCTCTCTC
CTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAGC
TAAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGCGAGCAAGTCTGTT
TCTTCAGGTAGCCCGTGGTACGGCCCAGACAGAGTCAAGTACTTGGGCCC
ATTCTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCGACT
ACGGTTGGGACACAGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAG
AACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCT
TGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGCCAAGTTCGGTG
AGGCCGTGTGGTTCAAGGCGGGAGCCCAGATCTTCAGCGAGGGCGGGCTA
GACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTGGCCAT
CTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTG
CTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGC
TTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAA
GGTTAAGGAAA
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