DR405775

Overview
NameDR405775
Unique NameDR405775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405775 vs. ExPASy Swiss-Prot
Match: H3L_BOVIN (Histone H3-like OS=Bos taurus PE=2 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.778e-32
Identity = 69/85 (81.18%), Postives = 75/85 (88.24%), Query Frame = 1
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF 327
            MARTK+TA KSTGGK PRKQL  +AA KSAP+T G+ KPHR+RPGTVALREIR YQKST  LIRKLPFQRLVREIAQDFKTDL+F
Sbjct:    1 MARTKRTAYKSTGGKVPRKQLVIEAAGKSAPSTSGMTKPHRYRPGTVALREIRPYQKSTHFLIRKLPFQRLVREIAQDFKTDLKF 85          
BLAST of DR405775 vs. ExPASy Swiss-Prot
Match: H3L3_LILLO (Histone H3-like 3 OS=Lilium longiflorum GN=leH3 PE=2 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 6.324e-30
Identity = 79/156 (50.64%), Postives = 89/156 (57.05%), Query Frame = 1
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPAT-----------------------GGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 471
            MAR K  AR STGGKAPRKQLA KA RK+AP T                        GVK+PHR+RPG + LREIRKY+K+    I KLPF RLVR+I Q+ K  LRF                  LFED    AIHAKRVT++PKDIQLAR I G
Sbjct:    1 MARMKLNARMSTGGKAPRKQLAYKAVRKAAPPTIGVKLPNSYRPGDQTVCKPAPPTDGVKEPHRYRPGKMGLREIRKYKKNARFFISKLPFHRLVRKITQNLKAHLRFQSTAMPAPEEVSEAYLVKLFED----AIHAKRVTLVPKDIQLARCIGG 152          
BLAST of DR405775 vs. ExPASy Swiss-Prot
Match: H3_ENTHI (Histone H3 OS=Entamoeba histolytica GN=H3 PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.992e-29
Identity = 77/136 (56.62%), Postives = 85/136 (62.50%), Query Frame = 1
Query:   73 MARTK-QTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 477
            MARTK    R S       K +A KAA+K        KK  R  PG VAL EI+  Q+STELL+RK PFQ LVREIAQ  K+DLRF                 GLFEDTNLCAIHAKR+TIMPKD+QLARRIRGER
Sbjct:    1 MARTKGHIERPSNKSAKAVKNVAFKAAKKMLSKDSTKKK--RAHPGAVALTEIKVLQRSTELLLRKAPFQALVREIAQVSKSDLRFQSAAISALQEAAEAYLVGLFEDTNLCAIHAKRITIMPKDMQLARRIRGER 134          
BLAST of DR405775 vs. ExPASy Swiss-Prot
Match: H33_HORVU (Histone H3.3 (Fragment) OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.904e-26
Identity = 63/80 (78.75%), Postives = 63/80 (78.75%), Query Frame = 1
Query:  241 KSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            KSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 80          
BLAST of DR405775 vs. ExPASy Swiss-Prot
Match: H3_LEIIN (Histone H3 OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 67/136 (49.26%), Postives = 84/136 (61.76%), Query Frame = 1
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR-FRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 477
            M+RTK+TAR        ++ + +K ++K+     GVK+ HR +RPGT A+REIRK+QKST LLI+  PFQRLVR + +  K  LRF                  L  DTNL  IHAKRVTI PKDIQLA R+RGER
Sbjct:    1 MSRTKETARA-------KRTITSKKSKKAPSGASGVKRSHRRWRPGTCAIREIRKFQKSTSLLIQCAPFQRLVRGVERQ-KEGLRFQSSAIMALQEATEAYIVSLMADTNLACIHAKRVTIQPKDIQLALRLRGER 128          
BLAST of DR405775 vs. ExPASy Swiss-Prot
Match: CENPA_NEUCR (Histone H3-like centromeric protein cse-4 OS=Neurospora crassa GN=cse-4 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 68/140 (48.57%), Postives = 86/140 (61.43%), Query Frame = 1
Query:   67 KSMARTKQTARKSTGGKAP--RKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK---TDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 471
            KS A +K+ A   T    P  R++    + +   P   G K+  R+RPGT+AL+EIR YQ++T+LL+ KLPF RLVREIA  F+    ++R+                  LFEDTNLCAIHAKRVTIM KDIQLARRIRG
Sbjct:   10 KSKAVSKKAAAVPTPKATPPGRRKSRASSVQPGDPVPQGKKR--RYRPGTLALKEIRNYQRTTDLLVAKLPFARLVREIAMQFRPMDEEMRWQSQAILALQEAAEAFLVHLFEDTNLCAIHAKRVTIMQKDIQLARRIRG 147          
BLAST of DR405775 vs. ExPASy Swiss-Prot
Match: H3L_ENCCU (Histone H3-like protein OS=Encephalitozoon cuniculi GN=ECU09_0450 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.040e-24
Identity = 62/132 (46.97%), Postives = 83/132 (62.88%), Query Frame = 1
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 468
            M+RTKQTA K+ GGKAPRK ++ K+   S   +  + K  RF+ G +AL+EIRKYQKST+LLIRK PFQR+VR++ +  +  +RF                  L ED   C +HAKRVT+MPKDI L  +I+
Sbjct:    1 MSRTKQTASKALGGKAPRKGISAKSIPSSG-CSPAMPKRTRFKAGALALKEIRKYQKSTDLLIRKRPFQRMVRDLCKG-REGVRFQASAIVAFQEAVENFLTSLMEDAYRCVLHAKRVTLMPKDICLVYKIK 130          
BLAST of DR405775 vs. ExPASy Swiss-Prot
Match: CENPA_DANRE (Histone H3-like centromeric protein A OS=Danio rerio GN=cenpa PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.040e-24
Identity = 62/132 (46.97%), Postives = 77/132 (58.33%), Query Frame = 1
Query:   79 RTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD-LRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 471
            R   T R+ +   +      ++  R S P+    +K H+FRPGT AL EIRKYQKST LL+RK PF RLVRE+ Q F  + + +                  LF D NLCAIHAKRVT+ P+DIQLARRIRG
Sbjct:   10 RKPSTPRRRSPPASLPPPAGSRTRRHSGPSGSSPRKKHKFRPGTRALMEIRKYQKSTGLLLRKAPFSRLVREVCQMFSREHMMWQGYALMALQEAAEAFMVRLFSDANLCAIHAKRVTLFPRDIQLARRIRG 141          
BLAST of DR405775 vs. ExPASy Swiss-Prot
Match: CENPA_CANAL (Histone H3-like centromeric protein CSE4 OS=Candida albicans GN=CSE4 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.970e-24
Identity = 69/122 (56.56%), Postives = 79/122 (64.75%), Query Frame = 1
Query:  121 PRKQLATKA-ARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDF---KTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 474
            PR+   T+    ++ P    VKK  R+RPGT ALREIR+YQKST+LLIRKLPF RLVREI+ DF      LR+                  L EDTNLCAIHAKRVTIM KDIQLARRIRG+
Sbjct:   91 PRRTTTTRPEVNRTVPR---VKK--RYRPGTKALREIRQYQKSTDLLIRKLPFARLVREISLDFVGPSYGLRWQSNAILALQEASESFLIHLLEDTNLCAIHAKRVTIMQKDIQLARRIRGQ 207          
BLAST of DR405775 vs. ExPASy Swiss-Prot
Match: CENPA_SCHPO (Histone H3-like centromeric protein cnp1 OS=Schizosaccharomyces pombe GN=cnp1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.574e-23
Identity = 65/118 (55.08%), Postives = 77/118 (65.25%), Query Frame = 1
Query:  148 ARKSAPATGGVKKPH----RFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD----FKTD--LRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 471
            A+KS  A  G   P     R+RPGT ALREIRKYQ+ST+LLI++LPF R+VREI+ +    F TD  LR+                  LFEDTNLCAIHAKRVTIM +D+QLARRIRG
Sbjct:    2 AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119          
The following BLAST results are available for this feature:
BLAST of DR405775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3L_BOVIN1.778e-3281.18Histone H3-like OS=Bos taurus PE=2 SV=3[more]
H3L3_LILLO6.324e-3050.64Histone H3-like 3 OS=Lilium longiflorum GN=leH3 PE... [more]
H3_ENTHI6.992e-2956.62Histone H3 OS=Entamoeba histolytica GN=H3 PE=3 SV=... [more]
H33_HORVU1.904e-2678.75Histone H3.3 (Fragment) OS=Hordeum vulgare PE=3 SV... [more]
H3_LEIIN4.690e-2549.26Histone H3 OS=Leishmania infantum PE=2 SV=1[more]
CENPA_NEUCR6.125e-2548.57Histone H3-like centromeric protein cse-4 OS=Neuro... [more]
H3L_ENCCU3.040e-2446.97Histone H3-like protein OS=Encephalitozoon cunicul... [more]
CENPA_DANRE3.040e-2446.97Histone H3-like centromeric protein A OS=Danio rer... [more]
CENPA_CANAL3.970e-2456.56Histone H3-like centromeric protein CSE4 OS=Candid... [more]
CENPA_SCHPO2.574e-2355.08Histone H3-like centromeric protein cnp1 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247J17 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247J17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405775 ID=DR405775; Name=DR405775; organism=Citrus sinensis; type=EST; length=705bp
GGGGGATCTTTCAATTTTCATTCATATTTTAAGATCTCCCAAGAAAAAAG
AAACACTTAATTTCCCAAATCAATGGCCCGCACGAAGCAAACCGCTCGCA
AGTCCACCGGAGGCAAGGCCCCAAGAAAGCAACTGGCGACCAAGGCGGCA
AGGAAATCCGCACCGGCAACCGGAGGAGTGAAGAAGCCTCACAGGTTCCG
TCCAGGAACTGTCGCACTCCGTGAAATCAGGAAGTACCAGAAGAGCACTG
AGCTTCTTATTAGGAAGCTTCCGTTCCAGAGATTGGTGAGGGAAATCGCT
CAGGATTTCAAGACGGATCTGAGGTTCCAGAGCAGCGCTGTTGCTGCACT
TCAGGAGGCTGCTGAGGCTTATCTTGTTGGGCTGTTCGAGGACACCAACC
TCTGCGCTATTCATGCTAAGAGGGTCACTATTATGCCCAAGGACATTCAG
CTTGCTAGGCGGATCAGGGGTGAAAGGGCTTAGGAACTTTCTGATTTAAT
GTATTTTGTTCCTCTTACTTCGATGTTAGTCTTTTGGTCAATATTTGGGG
TTTAGATTTATTGTTTGGATGTCTATCCGATGGATTAGATCGGNNNTAGT
ATGTATCTAAGGTGTTTGTTAAAATGTTTTCGAGGGTTTTTAATCTAATA
GATAATTAGCCTTTTAATATTTTTTTGAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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