DR405770

Overview
NameDR405770
Unique NameDR405770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405770 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 197.978 bits (502), Expect = 3.571e-50
Identity = 87/132 (65.91%), Postives = 104/132 (78.79%), Query Frame = 2
Query:    5 YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 400
            YYGRGP+QL+WN NY  CG A+GVDLLNNPDL+A D V++FK+AIWFWMTAQPPKPSCH VI  +W+PS  D  AGRLPGYG+ TNIINGG+ECG   +  V +RIGF+  +C  FG+ PG NLDC NQR +
Sbjct:  195 YYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSF 326          
BLAST of DR405770 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.772e-49
Identity = 86/141 (60.99%), Postives = 110/141 (78.01%), Query Frame = 2
Query:    5 YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 427
            Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VII  W PS+ D  A RLPG+G+ TNIINGG+ECG   ++ V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  ++
Sbjct:  188 YFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALLVDTL 328          
BLAST of DR405770 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.315e-49
Identity = 85/141 (60.28%), Postives = 109/141 (77.30%), Query Frame = 2
Query:    5 YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 427
            YYGRGPIQ+++N NY  CG A+G +LLNNPDL+AT+ V+SFKSAIWFWMTAQ PKPSCH+VI   W PSA D  A RLPGYG+ TNIINGG+ECG+  +  V++RIGF+  +C   G+ PGDN+DC NQ+ +   L+ ++M
Sbjct:  194 YYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334          
BLAST of DR405770 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 3.023e-49
Identity = 86/141 (60.99%), Postives = 105/141 (74.47%), Query Frame = 2
Query:    5 YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 427
            Y+GRGP+QL+WN NY +CG A+GVDLLNNPDLL++DP +SFKSA WFWMT Q PKPSCH VII  W PS++D  AGR  GYG+ TNIINGG+ECG   N  V +RIGF+  +C   G+  G+NLDC NQ P+G  +   SM
Sbjct:  162 YFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 302          
BLAST of DR405770 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.157e-49
Identity = 85/138 (61.59%), Postives = 108/138 (78.26%), Query Frame = 2
Query:    5 YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMA 418
            Y+GRGPIQL++N NY   GEA+G DLLNNP+L+A+DPV+SFK+A+WFWMT Q PKPSCH+VI  +W PS+ D+ AGR+PGYG+ TNIINGG+ECG+  +D V NRIGF+  +C   GI  G NLDC +QRP+   L A
Sbjct:  195 YFGRGPIQLSYNYNYGPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332          
BLAST of DR405770 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.735e-49
Identity = 87/144 (60.42%), Postives = 109/144 (75.69%), Query Frame = 2
Query:    5 YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM*SS 436
            YYGRGPIQ++WN NY +CG A+GVDLLN PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ DV A RLPGYG  TNIINGG+ECG   +  V++RIGFF  +C   G+  G+NLDC +Q P+G +L+   + +S
Sbjct:  184 YYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          
BLAST of DR405770 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.149e-48
Identity = 87/144 (60.42%), Postives = 108/144 (75.00%), Query Frame = 2
Query:    5 YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM*SS 436
            YYGRGPIQ++WN NY +CG A+GVDLLN PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ DV A RLPGYG  TNIINGG+ECG   +  V++RIGFF  +C   G+  G+NLDC +Q P+G +L    + +S
Sbjct:  183 YYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLFLSDLVTS 326          
BLAST of DR405770 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 2.559e-48
Identity = 84/132 (63.64%), Postives = 102/132 (77.27%), Query Frame = 2
Query:    5 YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 400
            YYGRGPIQ+T+N NY   G+A+G DLLNNPDL+A+D  +SFK+A WFWMT Q PKPSCH VI  +W PSA+D  AGR+PGYG  TNIINGG+ECG+  +D V +RIGF+  +C   G+  GDNLDC NQRPY
Sbjct:  186 YYGRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of DR405770 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.343e-48
Identity = 82/132 (62.12%), Postives = 103/132 (78.03%), Query Frame = 2
Query:    5 YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 400
            YYGRGP+QL+WN NY +CG A+G DLLNNPDL++ DPV++FK+AIWFWMT Q PKPSCH VI+ +W+PS  D  AGR+PGYG+ TNIINGG+ECG   +  V +RIGF+  +C   G+ PG NLDC NQR +
Sbjct:  180 YYGRGPMQLSWNYNYGQCGRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDCYNQRSF 311          
BLAST of DR405770 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.834e-46
Identity = 82/141 (58.16%), Postives = 107/141 (75.89%), Query Frame = 2
Query:    5 YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 427
            YYGRGPIQ+++N NY + G+A+GVDL+NNPDL+ATD V+SFK+A WFWMT Q PKPSCH VI   W PS  D +AGRLPG+G+ TNIINGG+ECG      V++RIGF+  +C    +  G+NLDC+NQRP+G  L+  ++
Sbjct:  174 YYGRGPIQISYNYNYGQAGKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDCNNQRPFGSGLLLDTI 314          
The following BLAST results are available for this feature:
BLAST of DR405770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIB_ARATH3.571e-5065.91Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIT_SOLTU1.772e-4960.99Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI3_TOBAC2.315e-4960.28Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI2_GOSHI3.023e-4960.99Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI9_ORYSJ5.157e-4961.59Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_PHAVU6.735e-4960.42Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU1.149e-4860.42Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI3_ORYSJ2.559e-4863.64Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_BRANA3.343e-4862.12Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIB_VITVI1.834e-4658.16Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247J10 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247J10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405770 ID=DR405770; Name=DR405770; organism=Citrus sinensis; type=EST; length=648bp
GGGGTACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTGCAATTACT
TAAGGTGCGGAGAAGCCTTGGGGGTGGACTTGTTGAACAATCCAGACCTA
CTTGCCACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGAT
GACTGCACAGCCACCAAAGCCGTCGTGCCACGAAGTCATTATCGACGAAT
GGAAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGGGATACGGT
CTAACCACAAATATAATCAACGGTGGAATTGAATGTGGCTACGTTGGGAA
TGACGCTGTACGTAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGT
TTGGGATTCAGCCTGGTGACAATCTTGATTGCTCCAACCAACGGCCTTAT
GGCCTTAATCTGATGGCACAATCTATGTGATCATCATGATCAACGTTTTA
GTAAAATAAGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACAC
TTGTAGGTGGACAACTAAACTGTTACGCTCTTATTGTAAGTAAATTAAAT
AAGACTGATCCAACATGGATCAATGAGTCTTCTCCNAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAANNNTAAAAAAAAAAAAAAAAAAAAAAAA
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