DR405770

Overview
NameDR405770
Unique NameDR405770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405770 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 9.167e-22
Identity = 56/127 (44.09%), Postives = 79/127 (62.20%), Query Frame = 2
Query:    5 YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGND--AVR-NRIGFFTTFCGKFGIQPGDNL 376
            Y  RGPIQLT N NY   G+A+G DL+ NPDL+  DP++SFK+A+WFWM+    KPSCH++++     +AN   A R+P  G+  NII+        G+D  AVR + IGF+  +C   G+  G +L
Sbjct:  236 YSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIISRAF-----GHDDFAVRSSSIGFYKRYCDMLGVSYGHDL 351          
BLAST of DR405770 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.042e-21
Identity = 47/127 (37.01%), Postives = 76/127 (59.84%), Query Frame = 2
Query:    2 GYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 382
            GY+GRGPIQL+WN NY  CG++L ++LL  P+L++++P ++F++ +WFWM +  P       ++++              G+G T   IN G+EC    + AV  RI ++  +CG+ G+ PG NL C
Sbjct:  164 GYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP-------VLNQ--------------GFGATIRAIN-GMECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of DR405770 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.258e-19
Identity = 46/126 (36.51%), Postives = 67/126 (53.17%), Query Frame = 2
Query:    5 YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 382
            YYGRGP+Q++WN NY   G A+G D L +P  +A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG      +  R+G++  +C + G+ PG NL C
Sbjct:  165 YYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of DR405770 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.258e-19
Identity = 47/127 (37.01%), Postives = 68/127 (53.54%), Query Frame = 2
Query:    2 GYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 382
            GY+GRGPIQL+WN NY   G A   D L  P+ ++ D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC       V+ R+ ++T +C + G+  GDNL C
Sbjct:  165 GYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of DR405770 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.370e-17
Identity = 43/126 (34.13%), Postives = 66/126 (52.38%), Query Frame = 2
Query:    5 YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 382
            YYGRGP+Q++WN NY   G  +G + L +P+ +A D V++FK+A+WFWM                     N+V+     G+G T   ING +EC       +  R+G++  +C +  + PG NL C
Sbjct:  176 YYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of DR405770 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.467e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 2
Query:  149 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 286
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of DR405770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
AGI_URTDI9.167e-2244.09Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI4_BRANA2.042e-2137.01Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIB_MAIZE4.258e-1936.51Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU4.258e-1937.01Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIA_MAIZE1.370e-1734.13Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_ARAHY1.467e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247J10 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247J10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405770 ID=DR405770; Name=DR405770; organism=Citrus sinensis; type=EST; length=648bp
GGGGTACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTGCAATTACT
TAAGGTGCGGAGAAGCCTTGGGGGTGGACTTGTTGAACAATCCAGACCTA
CTTGCCACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGAT
GACTGCACAGCCACCAAAGCCGTCGTGCCACGAAGTCATTATCGACGAAT
GGAAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGGGATACGGT
CTAACCACAAATATAATCAACGGTGGAATTGAATGTGGCTACGTTGGGAA
TGACGCTGTACGTAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGT
TTGGGATTCAGCCTGGTGACAATCTTGATTGCTCCAACCAACGGCCTTAT
GGCCTTAATCTGATGGCACAATCTATGTGATCATCATGATCAACGTTTTA
GTAAAATAAGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACAC
TTGTAGGTGGACAACTAAACTGTTACGCTCTTATTGTAAGTAAATTAAAT
AAGACTGATCCAACATGGATCAATGAGTCTTCTCCNAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAANNNTAAAAAAAAAAAAAAAAAAAAAAAA
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