DR405734

Overview
NameDR405734
Unique NameDR405734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL1B_SCHPO (60S ribosomal protein L1-B OS=Schizosaccharomyces pombe GN=rpl1b PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.753e-64
Identity = 120/216 (55.56%), Postives = 160/216 (74.07%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            MSK+   ++R  V  I++ S+E KKRNFTET+ELQIGLKNYDPQ+DKRFSG++KLP++PRP M +C+LGDA  ++ A+  G+D M V+                  Y AF+ASE +IKQIPRLLGPGL+KAGKFP+ V+H + L  K+ E K+T+KFQLKKVLC+GVAVG++ M E+Q+  N+ ++VNFLVSLLKK WQN+  L +KSTMG  +R+
Sbjct:    1 MSKVSVASVRSNVEQILKGSEE-KKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMAICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMGKPHRL 215          
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL10A_DICDI (60S ribosomal protein L10a OS=Dictyostelium discoideum GN=rpl10a PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 8.108e-64
Identity = 115/217 (53.00%), Postives = 160/217 (73.73%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXX-YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            MSK+ SD +R  VS + + ++E+K R F ET+ELQI LKNYD +KDKRFSG +K+  + +PK+ VC+  D QH +EA KIG ++MD+E                   Y AFLASES+++Q+P+LLGPGLNK GKFPTL+TH E + SK+N+ K+TVKFQLKKVLC+ VAVG++ + E+++  N+  S+NFLVSLLKK WQN++ LY+K++MGPS+R+
Sbjct:    1 MSKISSDQVRSIVSQLFKEAQESK-RGFLETVELQINLKNYDTKKDKRFSGQIKIGTVTKPKLSVCVFADQQHCDEATKIGAEFMDIEALKKIGPKNKKAIKKLSKKYDAFLASESILRQVPKLLGPGLNKVGKFPTLLTHSEDMASKINDVKSTVKFQLKKVLCLAVAVGHIELTEREVATNIIQSINFLVSLLKKGWQNIKTLYVKTSMGPSHRV 216          
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL1A_SCHPO (60S ribosomal protein L1-A OS=Schizosaccharomyces pombe GN=rpl1a PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.359e-63
Identity = 119/216 (55.09%), Postives = 160/216 (74.07%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            MSK+    +R +V +I++ S+E KKRNFTET+ELQIGLKNYDPQ+DKRFSG++KLP++PRP M +C+LGDA  ++ A+  G+D M V+                  Y AF+ASE +IKQIPRLLGPGL+KAGKFP+ V+H + L  K+ E K+T+KFQLKKVLC+GVAVG++ M E+Q+  N+ +++NFLVSLLKK WQN+  L +KSTMG   R+
Sbjct:    1 MSKVSPANIRSSVETILKGSEE-KKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIKSTMGKPYRL 215          
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL10A_TRYBR (60S ribosomal protein L10a OS=Trypanosoma brucei rhodesiense GN=RPL10A PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.934e-57
Identity = 113/216 (52.31%), Postives = 149/216 (68.98%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            MSK+    L EA+ +++   K+ K+R F E+I+LQ+ LKNYDPQKDKRFSGSV+LPH+ RP+M VC+L D  H + A+K  +  M+ E                  Y AFL SES+IK +PRL+GP +++ GKFPT+    ESL  KV E ++TVKFQLKKVLC+G  VG++ M E Q+ QNV M++NFLVSLLKKNWQN++  Y+KSTMG S RI
Sbjct:    1 MSKIPPALLSEAIQNVL---KDRKERKFKESIDLQVNLKNYDPQKDKRFSGSVRLPHVCRPRMTVCLLCDLVHEDIAKKNDVPTMNQEELKKLNKNKKLVKKMCNQYDAFLCSESIIKTVPRLVGPHMHRVGKFPTVCAQNESLPDKVLELQSTVKFQLKKVLCLGTCVGHVDMTEDQVRQNVVMAINFLVSLLKKNWQNLKSAYIKSTMGKSQRI 213          
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL10A_PIG (60S ribosomal protein L10a (Fragment) OS=Sus scrofa GN=RPL10A PE=2 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.590e-43
Identity = 87/164 (53.05%), Postives = 112/164 (68.29%), Query Frame = 3
Query:   69 SKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCM 560
            SK+  D L EAV  ++ +  +     F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC LGD QH +EA+ + + +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH   + +KV+E K+ VKFQ+K+VLC+
Sbjct:    3 SKVSRDTLYEAVREVL-HGNQRNXXKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCXLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNXDMVAKVDEVKSRVKFQMKEVLCL 165          
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL10A_ENTHI (60S ribosomal protein L10a (Fragment) OS=Entamoeba histolytica GN=RPL10A PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.694e-34
Identity = 76/163 (46.63%), Postives = 102/163 (62.58%), Query Frame = 3
Query:   93 REAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNL 581
            R+ V++I+   KE K+R F ET EL + LKNYDP KDKR  G+ KLP++ +   KVC+LGDAQ  E A+K  + +MDV+                  Y+ FL S+SV +Q+ ++LGPGLNK GKFP  +   E L+ K+NE +  V  QLKKVLCMGV  GN+
Sbjct:    6 RQGVATIL---KEKKERKFGETGELHLALKNYDPDKDKRCGGTDKLPNVTKANYKVCVLGDAQACEAAQKENIPHMDVDALKALYKDKMFFKKLARKYNTFLGSDSVGRQLQKILGPGLNKGGKFPPPLGKNEDLKVKINELQCQVNSQLKKVLCMGVGGGNV 165          
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL10A_CAERE (60S ribosomal protein L10a (Fragment) OS=Caenorhabditis remanei GN=rpl-10a PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.169e-28
Identity = 61/112 (54.46%), Postives = 77/112 (68.75%), Query Frame = 3
Query:  213 SGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKK 548
            SGS++L HIPRP MKVC+ GD  H++EA    +  M  +                  Y AF+ASES+IKQIPR+LGPGLNKAGKFP++VTH ESL+SK +E +ATVKFQ+KK
Sbjct:    1 SGSIRLKHIPRPSMKVCVFGDQHHLDEAAAGNIPAMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKK 112          
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL1_PYRKO (50S ribosomal protein L1P OS=Pyrococcus kodakaraensis GN=rpl1p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.488e-21
Identity = 59/209 (28.23%), Postives = 109/209 (52.15%), Query Frame = 3
Query:   93 REAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTH-QESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            ++ V ++ +     K RNFT+T+E+ + LK+ D +K + RF   V LPH    + K+ ++ D    E A+K+GLD +  E                  Y  F+A+  ++ +I R LG  L    K P +V     +LE  V + K TV+ QLK    +   +G   M+++++ +N +  +N +++ L++    V+ +Y+K+TMGP+ ++
Sbjct:    6 QKLVEAVKEAKARAKPRNFTQTVEMAVNLKDVDLRKPENRFKLEVVLPHGRGKEPKIAVIADGAVAEAAKKLGLDVISGEELEELAKSPRQARKLAKKYDFFIAAAPLMPKIGRYLGRYLGPRNKMPVVVPPTMTNLEPIVEKLKKTVRIQLKNNPVVHAPIGTEDMDDEKLAENAEAVLNAIINKLERGENQVKSVYIKTTMGPAVKV 214          
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL1_PYRHO (50S ribosomal protein L1P OS=Pyrococcus horikoshii GN=rpl1p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.185e-20
Identity = 60/218 (27.52%), Postives = 110/218 (50.46%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTH-QESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            MS++  D  ++ V ++ +     K RNFT+++E+ + LK+ D ++ + RF   V LPH     +K+ ++ D    E A ++GLD +                     Y  F+A   ++ +I R LG  L    K P +V     ++E  V + K TV+ QLK    +   VG   M ++Q+ +N++  +N ++  L++    +R +Y+K+TMGP+ R+
Sbjct:    1 MSRMAFDR-QKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLDVISSAELEEIAKSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTMTNIEPIVEKLKKTVRIQLKDNPVVHAPVGTEKMSDEQLAENIEAVLNAIIGKLERGENQIRSVYVKTTMGPAVRV 217          
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL1_PYRAB (50S ribosomal protein L1P OS=Pyrococcus abyssi GN=rpl1p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.226e-19
Identity = 60/218 (27.52%), Postives = 110/218 (50.46%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQES-LESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            MS++  D  ++ V ++ +     K RNFT+++E+ + LK+ D ++ + RF   V LPH     +K+ ++ D    E A ++GLD +                     Y  F+A   ++ +I R LG  L    K P +V    S LE  V + K TV+ QLK    +   VG   M +++I +N++  +N ++  L++    ++ +Y+K+TMGP+ ++
Sbjct:    1 MSRMPFDR-QKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNAIIGKLERGESQIKSVYVKTTMGPAVKV 217          
The following BLAST results are available for this feature:
BLAST of DR405734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RL1B_SCHPO4.753e-6455.5660S ribosomal protein L1-B OS=Schizosaccharomyces ... [more]
RL10A_DICDI8.108e-6453.0060S ribosomal protein L10a OS=Dictyostelium discoi... [more]
RL1A_SCHPO2.359e-6355.0960S ribosomal protein L1-A OS=Schizosaccharomyces ... [more]
RL10A_TRYBR1.934e-5752.3160S ribosomal protein L10a OS=Trypanosoma brucei r... [more]
RL10A_PIG1.590e-4353.0560S ribosomal protein L10a (Fragment) OS=Sus scrof... [more]
RL10A_ENTHI6.694e-3446.6360S ribosomal protein L10a (Fragment) OS=Entamoeba... [more]
RL10A_CAERE7.169e-2854.4660S ribosomal protein L10a (Fragment) OS=Caenorhab... [more]
RL1_PYRKO8.488e-2128.2350S ribosomal protein L1P OS=Pyrococcus kodakaraen... [more]
RL1_PYRHO7.185e-2027.5250S ribosomal protein L1P OS=Pyrococcus horikoshii... [more]
RL1_PYRAB1.226e-1927.5250S ribosomal protein L1P OS=Pyrococcus abyssi GN=... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247H07 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405734 ID=DR405734; Name=DR405734; organism=Citrus sinensis; type=EST; length=795bp
GGGGAGGGTNNNTTTTTCGTATTTGAAGAAAAAAAATTCTGTAAAGGGCT
CCAAGCGCTTCAATCATGAGTAAGCTTCAGAGTGATGCACTGAGAGAGGC
CGTCTCTAGTATTGTGCAATACTCTAAGGAGACAAAGAAGAGGAACTTCA
CCGAGACTATTGAGCTTCAGATTGGTCTCAAGAACTATGATCCACAAAAG
GACAAGCGTTTCAGTGGCTCTGTTAAGTTGCCTCACATTCCCCGCCCCAA
GATGAAGGTCTGCATGCTTGGTGATGCTCAACATGTTGAAGAGGCCGAGA
AGATTGGTTTGGACTACATGGATGTTGAAGGATTGAAAAAATTGAACAAG
AACAAGAAATTGGTGAAGAAACTTGCCAAGAAATATCATGCTTTCTTGGC
ATCAGAGTCTGTCATCAAGCAGATTCCTCGTTTGTTGGGTCCTGGTCTCA
ACAAGGCAGGAAAGTTCCCTACCCTTGTTACTCACCAAGAATCCCTGGAG
TCCAAAGTCAACGAGACTAAGGCAACAGTGAAGTTCCAATTGAAGAAGGT
GCTTTGCATGGGAGTTGCTGTTGGAAACCTTTCAATGGAGGAGAAGCAGA
TCTTCCAGAATGTTCAAATGAGTGTTAACTTCCTTGTCTCATTGTTGAAG
AAAAACTGGCAGAATGTCAGGTGCCTCTATCTGAAGAGTACCATGGGTCC
TTCAAACCGCATCTTTTAAGAATTCTGCTTTATGTTGGAGTTTTTGTAGG
NNNAACCTAGTGTGATCTTATTATACCCAAAATGNNNTTCTTTGA
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