DR405734
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL1_HALWD (50S ribosomal protein L1P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl1p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.222e-12 Identity = 51/209 (24.40%), Postives = 92/209 (44.02%), Query Frame = 3 Query: 81 SDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYD-PQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPS 704 +D + +AVS + E RNF ET++L + L++ D R SV LP + ++ + + AE + + + F+A +++ I R LG L GK PT + + + VN + TV+ + ++ VG M+ ++I NV + + L + L+K N+ +Y+K+TMGP+ Sbjct: 2 ADTITDAVSRAID---EAPTRNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQETQIVVFASGETALRAEDVADQVLSGDELEELGDDDDAAKDLADEIDFFVAEAGMMQDIGRFLGTILGPRGKMPTPLQPDDDVVETVNRMQNTVQIRSRERRTFHTRVGAQDMDSEEIADNVDVIIRRLEATLEKGPLNIDSMYVKTTMGPA 207
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL1_HALLT (50S ribosomal protein L1P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl1p PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.514e-12 Identity = 51/212 (24.06%), Postives = 95/212 (44.81%), Query Frame = 3 Query: 81 SDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYD-PQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713 +D ++EAV+ + + E RNF ET+++ I L++ D R SV LP + ++ + + + A+++ +D + F+A ++++ I R LG L GK PT + + + VN K TV+ + + VG M I N+ + + L + L+K N+ +Y+K+TMGP+ + Sbjct: 2 ADTIQEAVTLALDDAPE---RNFRETVDIAINLRDLDLNDPSNRIDESVVLPAGTGQETQIVVFAEGETAVRAQEVADQVLDSDDLEDLGDDDDRAKDLADETDFFVAEANLMQDIGRYLGTVLGPRGKMPTPLQPDDDIVDTVNRMKNTVQLRSRDRRTFHTRVGAEDMGPDAISDNIDVIIRRLEASLEKGPLNIDGIYVKTTMGPAKEV 210
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL1_METBF (50S ribosomal protein L1P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl1p PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.202e-12 Identity = 57/212 (26.89%), Postives = 96/212 (45.28%), Query Frame = 3 Query: 87 ALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYM--DVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713 ++ EAV +++ E+ KRNF+E+++L I LKN D K R V LPH ++K+ + A+ G Y+ DVE F+A + I + LG L GK P + + + + + ++ + K L V VG +M + +NV++ V+ L +L K N+R +Y+ +TMG S R+ Sbjct: 5 SILEAVKKVLE---ESPKRNFSESVDLAINLKNLDMNLPKNRVDEEVILPHGLGKELKIGVFAKGDVGLRAKAAGAAYVISDVE-LDELASDKTRARTLANECDLFIAETQFMPTIGKNLGIVLGPRGKMPIPLLPNKDIGELIQSKQNAIRLRSKDKLTFHVPVGRRTMSPDDLAENVEIIVSRLERVLDKGRHNLRTVYVTTTMGKSERV 212
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL1_META3 (50S ribosomal protein L1P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl1p PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.202e-12 Identity = 46/202 (22.77%), Postives = 89/202 (44.06%), Query Frame = 3 Query: 102 VSSIVQYSKETKKRNFTETIELQIGLKNYD-PQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPS 704 ++++ + K K RNF ++++L + LK D + + R +V LPH + K+ ++ +A+++GL + E F+A ++ + + LGP L GK P V +L+ V K TV + V G + ++++ +N+ ++ + +K +V+ Y K TMGPS Sbjct: 7 LNAVKEARKNAKPRNFNQSVDLIVNLKELDFSRPENRIKQNVILPHGRGKESKIAVIAKGDLAAQADEMGLTVIRQEELEELGKNKKNAKKLANENDFFIAQADMMPLVGKTLGPVLGPRGKMPQPVPANANLKPLVERFKKTVSINTRDKPSFKVLAGTEKLNDEELAENIDAILSTVARQYEKGLYHVKNAYTKLTMGPS 208
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL1_ARCFU (50S ribosomal protein L1P OS=Archaeoglobus fulgidus GN=rpl1p PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.406e-12 Identity = 51/206 (24.76%), Postives = 92/206 (44.66%), Query Frame = 3 Query: 102 VSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDV-EGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713 V SI + K KKR F ET+E+ + L+N D +K + R V LPH K+ + +A++ G D + E F+A ++ +I R LGP L GK P + + ++ + +VK + + +G+ +M+ ++I +N + + + + Q V+ +Y+K TMGP+ R+ Sbjct: 9 VKSIEEAIKNGKKRRFVETVEMAVNLRNVDMKKPENRIDTVVNLPHGLGKPRKIGVFAKGDTALKAKEAGADVVITPEEIDELAKDKRRAKKLANSIDFFIAEAPLMPEIGRKLGPVLGPRGKIPQPIPPLADPKPFIDRLRNSVKIRTRDKTTFHAPIGSENMDVEKIAENAMEILKVVENKYENPTQVVKSVYVKKTMGPAVRV 214
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL1_ENCCU (60S ribosomal protein L1 OS=Encephalitozoon cuniculi GN=RPL1 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.095e-11 Identity = 50/211 (23.70%), Postives = 96/211 (45.50%), Query Frame = 3 Query: 102 VSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIP-RLLGPGLNK---------AGKFPTLVTHQESLESKVNETKATVKFQLKKVLCM-GVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGP 701 + I+ KE++ TI++Q+ LK +DP+KD + S + LP+ R K ++ D HV+ L Y+ ++ ESV+K+ +L PG NK GK P ++ + + + + K + K +++ + VG+ M+ + I++N+++ + LVS LK QN++ + +K+ P Sbjct: 18 IIGIINQLKESEDPEKIVTIQIQVNLKGFDPRKDNKVSKDMVLPYRVRSLDKTIVIADEAHVKVCIDANLPYVPIDEISGDDKKD--------------IRESVLKKNKFFILCPGYNKIYQLKNILRCGKTPHILRNGDDINAVFETGKKSCKLRIQDDFSVTSFTVGHTGMDSEHIYENIKVGMGLLVSYLKNGSQNLKGVMIKTDQSP 214
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL1_KORCO (50S ribosomal protein L1P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl1p PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11 Identity = 52/225 (23.11%), Postives = 113/225 (50.22%), Query Frame = 3 Query: 66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDK--RFSGSVKLPHIPRP-KMKVCMLGDAQHVEEAEKIGLD-YMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQ--ESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQN---VRCLYLKSTMGPSNRI 713 MSKL +++ +++ I + + + KR F E ++L + L+ D ++D + + V+LPH PR K KV ++G + + +A++ G D ++ E Y F+A V+ +I + +GP L K P + L + + + +V+ + K + VG+ M+ ++I +N++ ++S +++ +++ + +Y+K+TMGP+ + Sbjct: 1 MSKLLTES--DSLKVIRRILEGSPKRRFNEAVDLVVVLRGIDLKRDPNAKINEVVELPHSPRNRKTKVAVIGKGEFLSKAKEAGADRVLEPEEIEAIAANKRALKKLANEYDFFIAQADVLPKIVKYIGPVLGPRNKMPINLPAMAVSQLPDLIEKLRRSVRIRTKDQPIIHTKVGSRDMKPEEIVENIRA----VLSAIERKYEDPSKISRVYVKTTMGPAEEL 219
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL1_THEVO (50S ribosomal protein L1P OS=Thermoplasma volcanium GN=rpl1p PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.574e-11 Identity = 50/209 (23.92%), Postives = 97/209 (46.41%), Query Frame = 3 Query: 90 LREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713 + +AV ++ Q S + R F E++E+ I LK+ D K R + + LP+ +KV + G + +A+ + E + F+A +++ I + LG L GK P + + + K TVK + + L + V VG SM+ ++I +N+ +N + L++ N++ +Y+K+TMG + ++ Sbjct: 6 ISKAVEAVKQSSPQ---RKFEESVEIAINLKDIDMTNPKNRINEEILLPNGRGKDVKVVIFGSEELKAKAKGVADYIFGPEDISKFAEDKKAFKKIVNDAYFFIAEATLMANIGKSLGQVLGPRGKMPRPIPPGQDPVPLIKALKNTVKARSRNSLTLHVPVGTRSMDTQKISENIMAILNRITGKLERGHSNIKNVYVKTTMGKAVQV 211
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL1_HALSA (50S ribosomal protein L1P OS=Halobacterium salinarium GN=rpl1p PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 4.668e-11 Identity = 50/206 (24.27%), Postives = 91/206 (44.17%), Query Frame = 3 Query: 90 LREAVSSIVQYSKETKKRNFTETIELQIGLKNYD-PQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPS 704 + EAV+ ++ + +RNF ET++L + L++ D +R V LP + ++ + D + A+ + D +D + F+A +++ I LG L GK PT + + + VN K TV+ + + VG M + I N+ + + L + L+K NV +Y+K+TMGP+ Sbjct: 6 IEEAVARALE---DAPQRNFRETVDLAVNLRDLDLNDPSQRVDEGVVLPSGTGQETQIVVFADGETAVRADDVADDVLDEDDLSDLADDTDAAKDLADETDFFVAEAPMMQDIAGALGQVLGPRGKMPTPLQPDDDVVDTVNRMKNTVQIRSRDRRTFHTRVGAEDMSAEDIASNIDVIMRRLHANLEKGPLNVDSVYVKTTMGPA 208
BLAST of DR405734 vs. ExPASy Swiss-Prot
Match: RL1_HALS3 (50S ribosomal protein L1P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl1p PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.668e-11 Identity = 50/206 (24.27%), Postives = 91/206 (44.17%), Query Frame = 3 Query: 90 LREAVSSIVQYSKETKKRNFTETIELQIGLKNYD-PQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPS 704 + EAV+ ++ + +RNF ET++L + L++ D +R V LP + ++ + D + A+ + D +D + F+A +++ I LG L GK PT + + + VN K TV+ + + VG M + I N+ + + L + L+K NV +Y+K+TMGP+ Sbjct: 6 IEEAVARALE---DAPQRNFRETVDLAVNLRDLDLNDPSQRVDEGVVLPSGTGQETQIVVFADGETAVRADDVADDVLDEDDLSDLADDTDAAKDLADETDFFVAEAPMMQDIAGALGQVLGPRGKMPTPLQPDDDVVDTVNRMKNTVQIRSRDRRTFHTRVGAEDMSAEDIASNIDVIMRRLHANLEKGPLNVDSVYVKTTMGPA 208 The following BLAST results are available for this feature:
BLAST of DR405734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >DR405734 ID=DR405734; Name=DR405734; organism=Citrus sinensis; type=EST; length=795bpback to top |