DR405728

Overview
NameDR405728
Unique NameDR405728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405728 vs. ExPASy Swiss-Prot
Match: IDI_SERP5 (Isopentenyl-diphosphate Delta-isomerase OS=Serratia proteamaculans (strain 568) GN=idi PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.797e-19
Identity = 59/163 (36.20%), Postives = 86/163 (52.76%), Query Frame = 3
Query:  285 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQL 773
            ++  ILVD +D  +G ++K   H         LLHRAFS+F+F+S+  LLLQQR+ +K     +WTN+CC HP + ES L          AAQR+L +E+G  AE   V  FT      Y+A   G   EHE D++   + D      P+E   + + + +QL
Sbjct:    2 DEMLILVDADDNAIGSQSKTRVHQQ------GLLHRAFSIFIFDSQGRLLLQQRAFSKYHSAGLWTNSCCGHPRWGESTLA---------AAQRRLQEEMGFSAELQQVSSFT------YQAAVPGDLIEHEFDHIYVGLFDGKPQGAPEEAHSWSWTDIQQL 143          
BLAST of DR405728 vs. ExPASy Swiss-Prot
Match: IDI1_AZOSE (Isopentenyl-diphosphate Delta-isomerase 1 OS=Azoarcus sp. (strain EbN1) GN=idi1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.571e-19
Identity = 61/160 (38.12%), Postives = 84/160 (52.50%), Query Frame = 3
Query:  285 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI-CAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVN 761
            ED+ ILVDEND  +G E K   H          LHRA S+F+F+S   LLLQ+R+ +K     +W+NTCCSHP  RE             AA+R+L +E+GI C  DV           +Y+A       E+E D++ F   D    PNPDE  ++K+V+
Sbjct:    2 EDQVILVDENDTEIGVEGKMIAHRSGS------LHRAISIFIFDSADRLLLQKRAASKYHSAGLWSNTCCSHPRPREE---------CARAARRRLREEMGIACELDVKFG-------FVYRAVLTNHLIENEFDHVFFGRHDGDPVPNPDEAEDWKWVD 139          
BLAST of DR405728 vs. ExPASy Swiss-Prot
Match: IDI_NOCFA (Isopentenyl-diphosphate Delta-isomerase OS=Nocardia farcinica GN=idi PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.908e-18
Identity = 62/155 (40.00%), Postives = 81/155 (52.26%), Query Frame = 3
Query:  300 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG--EHELDYLLFIVRDVSVNPNPDEVAEYKYV 758
            LVDE  R VG      C + E       LHRAFSV LF++   +LLQQR+  K  FPL+W NTCC HP   ES         V  AA  +L +ELG+ A        T +G   Y+A +D   G  EHE D++L    D + +P+P EVA  ++V
Sbjct:    5 LVDEAGRAVGA-----CPVAEAHRDPGKLHRAFSVLLFDTAGRVLLQQRAAVKTRFPLLWANTCCGHPAPGES---------VEAAAATRLAEELGVAA------GLTEVGVFRYRA-ADTATGRVEHEWDHVLIGTLDTTPHPDPAEVANLRWV 138          
BLAST of DR405728 vs. ExPASy Swiss-Prot
Match: IDI2_AZOSE (Isopentenyl-diphosphate Delta-isomerase 2 OS=Azoarcus sp. (strain EbN1) GN=idi2 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.062e-16
Identity = 56/163 (34.36%), Postives = 81/163 (49.69%), Query Frame = 3
Query:  285 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQL 773
            ED+ ILVDE+D  VG   K   H          LHRA S+F+F+S   L+LQ+R+  K     +W+NTCCSHP   E            +AA+R+L +E+G+  E      F      +Y+        EHE D++ F   D     NPDE  ++K+V+  +L
Sbjct:    2 EDQVILVDEHDNKVGFAGKMAAH------QRGALHRAISIFVFDSHSRLMLQRRAAGKYHSGGLWSNTCCSHPRPNEES---------ADAARRRLREEMGVDCELKKAFSF------VYRTKFGSGLIEHEFDHVFFGNHDGRPVLNPDEADDWKWVDLTEL 143          
BLAST of DR405728 vs. ExPASy Swiss-Prot
Match: IDI1_PHOLL (Isopentenyl-diphosphate Delta-isomerase 1 OS=Photorhabdus luminescens subsp. laumondii GN=idi1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.517e-16
Identity = 56/158 (35.44%), Postives = 83/158 (52.53%), Query Frame = 3
Query:  288 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVN 761
            +  +LVDEND  VG  NK + HL     + + LHRAFS F+ NSK E+ +QQR+ +K+ +P  W+N+ CSHP   E          + +A  R+  +ELGI   + P  +F  L +  YK        EHEL ++  +  D     NP EV+   ++N
Sbjct:    2 ENVVLVDENDNRVGCINKIDAHL-----NGDHLHRAFSCFIINSKNEVYIQQRAQSKLLWPGYWSNSYCSHPRPDEE---------ISHAVMRRAEEELGIVINEEP--KF--LYKFQYKEKYKDVGYEHELCHVFVVFTDTPPTENPKEVSAGFFIN 141          
BLAST of DR405728 vs. ExPASy Swiss-Prot
Match: IDI_BURM1 (Isopentenyl-diphosphate Delta-isomerase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=idi PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.336e-15
Identity = 56/159 (35.22%), Postives = 85/159 (53.46%), Query Frame = 3
Query:  285 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVN 761
            E+  ILVD +DR +G   K   H         LLHRAFS+F+F+S   LLLQQR+  K     +W+NTCC HP  RE+         + +A +R+L +E+G   E  PVD       ++Y+A  +    EHE  ++     D +V P+  EVA +++++
Sbjct:    2 EERLILVDTDDRPIGICEKMRAH------HEGLLHRAFSIFVFDSAGRLLLQQRALNKYHSGGLWSNTCCGHPRPREA---------LPDAVRRRLGEEMGFACELRPVD------ALVYRARFENDLIEHEFVHIHVGRFDGTVAPDFAEVAAWRWID 139          
BLAST of DR405728 vs. ExPASy Swiss-Prot
Match: IDI2_PHOLL (Isopentenyl-diphosphate Delta-isomerase 2 OS=Photorhabdus luminescens subsp. laumondii GN=idi2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.745e-15
Identity = 55/155 (35.48%), Postives = 83/155 (53.55%), Query Frame = 3
Query:  297 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVN 761
            +LVD++D  +G   K + H         +LHRAFS+F+F++K  LLLQ+R+ TK     +WTN+CC HP  R  E +E        AA R+L +E+G    D P+ +   +   +Y A       E+E D++     D     N DEV++YK+VN
Sbjct:    6 VLVDKHDNPIGSAGKADIH------QKGMLHRAFSIFVFDNKGNLLLQKRAATKYHSAGLWTNSCCGHP--RVGEALEA-------AAHRRLGEEMGF---DCPLKK---VSSFIYHAILPNNLIEYEYDHVFIGRFDKEPIINLDEVSDYKWVN 139          
BLAST of DR405728 vs. ExPASy Swiss-Prot
Match: IDI_PHOPR (Isopentenyl-diphosphate Delta-isomerase OS=Photobacterium profundum GN=idi PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.888e-15
Identity = 54/170 (31.76%), Postives = 89/170 (52.35%), Query Frame = 3
Query:  276 LMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFI-VRDVSVNPNPDEVAEYKYVNREQL 773
            ++ E++ +LVD+  R +G + K   H          LH AFSV L+       E L+QQR+  K     +WTNTCCSHP  R+ E +E+       A  R+L +E+GI    V ++    +   +Y+A  D +  EHE D++L     ++++ PN +EV  Y++ ++  L
Sbjct:    1 MIIEEQVVLVDQQGRALGLQEKMQAHRD------GALHLAFSVLLYRETTQGIEFLMQQRALGKYHSGGLWTNTCCSHP--RQGETLEQ-------AGLRRLTEEMGI----VGLESLDDIASFVYRAELDNQLIEHEWDHVLIANGTELAIIPNSEEVKSYRWWSKADL 151          
BLAST of DR405728 vs. ExPASy Swiss-Prot
Match: IDI_VIBFM (Isopentenyl-diphosphate Delta-isomerase OS=Vibrio fischeri (strain MJ11) GN=idi PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.615e-14
Identity = 57/157 (36.31%), Postives = 79/157 (50.32%), Query Frame = 3
Query:  297 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFI-VRDVSVNPNPDEVAEYKY 755
            +LV+E    +G   K   H  EK     LLH AFSV L+       E LLQ+R+  K      W+NTCCSHP   E+         V  A  R+L +E+GI    V  ++F  LG  +Y+A  +    EHE DY+L     DVS   NP+EV++ ++
Sbjct:    6 VLVNEQGDAIGTMEKLEAH--EK----GLLHLAFSVLLYRETDLGKEFLLQKRAECKYHSKNKWSNTCCSHPRVNEN---------VEAAGTRRLNEEIGITG--VLPEQFVNLGWFIYQAELENGLSEHEQDYILIANTPDVSFILNPEEVSDIQW 145          
BLAST of DR405728 vs. ExPASy Swiss-Prot
Match: IDI_VIBF1 (Isopentenyl-diphosphate Delta-isomerase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=idi PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.333e-14
Identity = 57/157 (36.31%), Postives = 79/157 (50.32%), Query Frame = 3
Query:  297 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFI-VRDVSVNPNPDEVAEYKY 755
            +LV+E    +G   K   H  EK     LLH AFSV L+       E LLQ+R+  K      W+NTCCSHP   E+         V  A  R+L +E+GI    V  ++F  LG  +Y+A  +    EHE DY+L     DVS   NP+EV++ ++
Sbjct:    6 VLVNEQGDAIGTMEKLEAH--EK----GLLHLAFSVLLYRETDLGKEFLLQKRAECKYHSKNKWSNTCCSHPRVNEN---------VEVAGTRRLNEEIGITG--VLPEQFVNLGWFIYQAELENGLSEHEQDYILIANTPDVSFILNPEEVSDIQW 145          
The following BLAST results are available for this feature:
BLAST of DR405728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IDI_SERP55.797e-1936.20Isopentenyl-diphosphate Delta-isomerase OS=Serrati... [more]
IDI1_AZOSE7.571e-1938.13Isopentenyl-diphosphate Delta-isomerase 1 OS=Azoar... [more]
IDI_NOCFA4.908e-1840.00Isopentenyl-diphosphate Delta-isomerase OS=Nocardi... [more]
IDI2_AZOSE2.062e-1634.36Isopentenyl-diphosphate Delta-isomerase 2 OS=Azoar... [more]
IDI1_PHOLL3.517e-1635.44Isopentenyl-diphosphate Delta-isomerase 1 OS=Photo... [more]
IDI_BURM11.336e-1535.22Isopentenyl-diphosphate Delta-isomerase OS=Burkhol... [more]
IDI2_PHOLL1.745e-1535.48Isopentenyl-diphosphate Delta-isomerase 2 OS=Photo... [more]
IDI_PHOPR3.888e-1531.76Isopentenyl-diphosphate Delta-isomerase OS=Photoba... [more]
IDI_VIBFM5.615e-1436.31Isopentenyl-diphosphate Delta-isomerase OS=Vibrio ... [more]
IDI_VIBF17.333e-1436.31Isopentenyl-diphosphate Delta-isomerase OS=Vibrio ... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247G20 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247G20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405728 ID=DR405728; Name=DR405728; organism=Citrus sinensis; type=EST; length=775bp
GGGGTTGCCATATTGAGGTCCCAATGTCTACTACTACGCTTTATAACTGC
GCCACAACCAAACTCTGCTCCTCACTAATCAACAACTCTTCTTCTTTCTC
GAAGTCCCGTCTATTTTTCTCCTCTTCCCATTTCGCCCCTAGGGTTTCTT
CGATTCGCAGGCCTCTGTCCTTGGGAGGTGCCTCTCGTTCTAGCTCTTCT
TCTTCTTCCGCTCGCGCAATCAGCACTATGGGTGACGCTACTACTGATGC
CGGCATGGACGCTGTCCAGCGCCGCCTCATGTTTGAAGACGAATGCATTT
TGGTGGATGAGAATGATCGCGTTGTTGGTCATGAAAACAAATACAACTGT
CACTTGATGGAAAAGATTGAGTCTTTGAATTTGCTACACAGAGCCTTCAG
CGTATTTTTGTTTAACTCAAAATATGAGCTACTCCTTCAGCAACGCTCTG
GAACCAAAGTTACCTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCAT
CCTCTGTACCGTGAATCTGAGCTTATTGAGGAGAACGCTCTTGGGGTGAG
GAATGCTGCACAAAGAAAGCTTTTGGATGAGCTGGGCATTTGTGCTGAAG
ATGTGCCAGTTGATGAGTTCACTCCACTGGGTCGCATTCTGTACAAGGCC
CCTTCTGATGGCAAGTGGGGGGAGCATGAACTTGACTACTTACTTTTCAT
TGTCCGAGATGTTAGTGTTAACCCAAATCCTGATGAAGTAGCCGAGTATA
AATATGTCAACCGGGAACAGTTAAA
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