DR405728

Overview
NameDR405728
Unique NameDR405728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405728 vs. ExPASy Swiss-Prot
Match: IDI_STRCO (Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces coelicolor GN=idi PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.251e-13
Identity = 54/159 (33.96%), Postives = 75/159 (47.17%), Query Frame = 3
Query:  300 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGK-WGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQL 773
            LVDEN   +G   K + H     +    LHRAFSVFLF+ +  LL+QQR+  K   P VW+NTCC HP   E+            AA R+  +ELG     V        G + Y  P       E E ++L   +    + P+P+EVA   +V+  +L
Sbjct:   24 LVDENGVTIGTAEKLSAH-----QPPGRLHRAFSVFLFDERGRLLIQQRALGKYHSPGVWSNTCCGHPYPGEAPFA---------AAARRTFEELG-----VSPSLLAEAGTVRYNHPDPASGLVEQEYNHLFVGLVQAELRPDPEEVAGTAFVSPAEL 163          
BLAST of DR405728 vs. ExPASy Swiss-Prot
Match: IDI_STRGG (Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=idi PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.134e-13
Identity = 53/159 (33.33%), Postives = 74/159 (46.54%), Query Frame = 3
Query:  300 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGK-WGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQL 773
            LVDEN   +G   K   H     ++   LHRAFSVFLF+ +  LLLQ+R+  K   P VW+NTCC HP   E+            AA R+  +ELG+             G + Y  P       E E ++L   +   +  P+P+EV E  +V   +L
Sbjct:   24 LVDENGTTIGTAEKLAAH-----QAPGQLHRAFSVFLFDEQGRLLLQRRALGKYHSPGVWSNTCCGHPYPGEAPFA---------AAARRTHEELGLSP-----SLLAEAGTVRYNHPDPASGLVEQEFNHLFVGLAQTAPKPDPEEVGETAFVTAAEL 163          
BLAST of DR405728 vs. ExPASy Swiss-Prot
Match: IDI_SACEN (Isopentenyl-diphosphate Delta-isomerase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=idi PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.059e-12
Identity = 48/152 (31.58%), Postives = 79/152 (51.97%), Query Frame = 3
Query:  288 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 743
            ++ +L++++ + +G  +K   H ++       LH AFS ++FN + +LLL QR+  K T+P VWTNTCC HP  +E+         +  A  R+L +ELG+   D+ +     L R  Y+A       E+E+  +     D    PN +EVA
Sbjct:    2 EQVVLLNDSGQAIGVTDKATVHHLD-----TPLHLAFSCYVFNGRGQLLLTQRAHEKRTWPGVWTNTCCGHPAPQEA---------MPEAITRRLGEELGLTVRDLTL----VLPRFRYRAVMGNGVVENEICPVFAAFTDDEPAPNREEVA 135          
BLAST of DR405728 vs. ExPASy Swiss-Prot
Match: IDI_STRAW (Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces avermitilis GN=idi PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.383e-12
Identity = 53/159 (33.33%), Postives = 73/159 (45.91%), Query Frame = 3
Query:  300 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS-DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQL 773
            LVDEN   +G   K   H     +    LHRAFSVFLF+ +  LLLQQR+  K   P VW+NTCC HP   E+            AA R+  +ELG     V        G + Y  P  D    E E ++L   +    + P+ +E+ +  +V   +L
Sbjct:   24 LVDENGTTIGTAEKLAAH-----QPPGQLHRAFSVFLFDEQGRLLLQQRALGKYHSPGVWSNTCCGHPYPGEAPFA---------AAARRTHEELG-----VSPSLLAEAGTVRYNHPDPDSGLVEQEFNHLFVGLVQSPLRPDAEEIGDTAFVTAAEL 163          
BLAST of DR405728 vs. ExPASy Swiss-Prot
Match: IDI_HALHL (Isopentenyl-diphosphate Delta-isomerase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=idi PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.359e-12
Identity = 54/150 (36.00%), Postives = 72/150 (48.00%), Query Frame = 3
Query:  288 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYL-LFIVRDVSVNPNPD 734
            +  ++VD   + VG E K   H          LH AF VF+FN + ELLLQ+R+ +K  F  +W+NTCC HP   E         GV  AA+R+L +E G      PV +FT      Y A  D   G  E +Y  + I R  +  P PD
Sbjct:    2 EHVVIVDPEGQRVGTEEKIRAHA-----DGGTLHLAFCVFVFNPRGELLLQRRADSKYHFSGLWSNTCCGHPRPGE---------GVTEAAERRLGEEFGFVTRLHPVAQFT------YHA-EDHHTGLAEYEYAHVLIGRAPTDQPAPD 130          
BLAST of DR405728 vs. ExPASy Swiss-Prot
Match: IDI_CLAMS (Isopentenyl-diphosphate Delta-isomerase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=idi PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.255e-12
Identity = 49/159 (30.82%), Postives = 78/159 (49.06%), Query Frame = 3
Query:  297 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQL 773
            +L+D++   +G   K   H  +       LH AFS  +F+++  +L+ +R+  K+T+P VWTN+ C HP   E  L          A  R+   ELG+  E V +     L    Y+A       E+E+  +   V    V+P P+EV EY++V+ EQL
Sbjct:    9 VLLDDDGETIGTAPKATVHTRD-----TALHLAFSCHVFDAEGRILVTRRAIGKLTWPGVWTNSFCGHPAPDEDML---------EAVHRRAEQELGLTLESVEL----VLPDFRYRATDAAGVVENEICPVFRAVAATPVDPRPEEVGEYQWVDPEQL 149          
BLAST of DR405728 vs. ExPASy Swiss-Prot
Match: IDI_CLAM3 (Isopentenyl-diphosphate Delta-isomerase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=idi PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.864e-12
Identity = 49/159 (30.82%), Postives = 79/159 (49.69%), Query Frame = 3
Query:  297 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQL 773
            +L+D++   +G   K   H  +       LH AFS  +F+++  +L+ +R+  K+T+P VWTN+ C HP   E          +R A  R+   ELG+  E V +     L    Y+A       E+E+  +   V    V+P P+EV EY++V+ EQL
Sbjct:    9 VLLDDDGETIGTAPKATVHTRD-----TALHLAFSCHVFDAQGRILVTRRAIGKLTWPGVWTNSFCGHPAPDED---------MREAVHRRAEQELGLELESVEL----VLPDFRYRATDAAGVVENEICPVFRAVAASPVDPRPEEVGEYQWVDPEQL 149          
BLAST of DR405728 vs. ExPASy Swiss-Prot
Match: IDI_KLEP7 (Isopentenyl-diphosphate Delta-isomerase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=idi PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11
Identity = 58/163 (35.58%), Postives = 85/163 (52.15%), Query Frame = 3
Query:  279 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV-PVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYKYVN 761
            M  +  IL+DE D+  G   KY  H  +       LH AFS +LFN + +LL+ +RS  K  +P VWTN+ C HP  ++ E  E+       A  R+   ELG+   D+ PV    P  R  Y+A +     E+E+   ++  R VS V PN DEV +Y++V+
Sbjct:    1 MAGEHVILLDEQDQPAGMLEKYAAHTFD-----TPLHLAFSCWLFNQQGQLLVTRRSLGKKAWPGVWTNSVCGHP--QQGETFEQ-------AVTRRCRFELGVEISDIAPVH---PAFR--YRAVAPNGIVENEV-CPVYAARVVSEVQPNDDEVMDYQWVD 143          
BLAST of DR405728 vs. ExPASy Swiss-Prot
Match: IDI_KLEP3 (Isopentenyl-diphosphate Delta-isomerase OS=Klebsiella pneumoniae (strain 342) GN=idi PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11
Identity = 56/166 (33.73%), Postives = 85/166 (51.20%), Query Frame = 3
Query:  279 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYKYVNREQL 773
            M  +  IL+DE D+  G   KY  H ++       LH AFS +LFN + + L+ +RS  K  +P VWTN+ C HP  ++ E  E+       A  R+   ELG+  E   +    P  R  Y+A +     E+E+   ++  R VS V PN DEV +Y++V+ E +
Sbjct:    1 MAGEHVILLDEQDQPAGMLEKYAAHTLD-----TPLHLAFSCWLFNQQGQFLVTRRSLGKKAWPGVWTNSVCGHP--QQGETFEQ-------AVTRRCRFELGV--EIADIAPIHPAFR--YRAVAPNGIVENEV-CPVYAARVVSQVQPNDDEVMDYQWVDLETM 147          
BLAST of DR405728 vs. ExPASy Swiss-Prot
Match: IDI_MYCTU (Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium tuberculosis GN=idi PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 50/161 (31.06%), Postives = 80/161 (49.69%), Query Frame = 3
Query:  288 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQ 770
            +  +L+++     G  +K   H  +       LH AFS ++F+   +LL+ +R+ TK T+P VWTN+CC HPL  ES         +  A +R+L  ELG+  +   VD   P  R  Y+A       E+E+  +  +  D    PN DEV   ++++ EQ
Sbjct:   12 ERVVLLNDRGDATGVADKATVHTGD-----TPLHLAFSSYVFDLHDQLLITRRAATKRTWPAVWTNSCCGHPLPGES---------LPGAIRRRLAAELGLTPD--RVDLILPGFR--YRAAMADGTVENEICPVYRVQVDQQPRPNSDEVDAIRWLSWEQ 154          
The following BLAST results are available for this feature:
BLAST of DR405728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IDI_STRCO1.251e-1333.96Isopentenyl-diphosphate Delta-isomerase OS=Strepto... [more]
IDI_STRGG2.134e-1333.33Isopentenyl-diphosphate Delta-isomerase OS=Strepto... [more]
IDI_SACEN1.059e-1231.58Isopentenyl-diphosphate Delta-isomerase OS=Sacchar... [more]
IDI_STRAW1.383e-1233.33Isopentenyl-diphosphate Delta-isomerase OS=Strepto... [more]
IDI_HALHL2.359e-1236.00Isopentenyl-diphosphate Delta-isomerase OS=Halorho... [more]
IDI_CLAMS5.255e-1230.82Isopentenyl-diphosphate Delta-isomerase OS=Claviba... [more]
IDI_CLAM36.864e-1230.82Isopentenyl-diphosphate Delta-isomerase OS=Claviba... [more]
IDI_KLEP71.171e-1135.58Isopentenyl-diphosphate Delta-isomerase OS=Klebsie... [more]
IDI_KLEP31.171e-1133.73Isopentenyl-diphosphate Delta-isomerase OS=Klebsie... [more]
IDI_MYCTU5.811e-1131.06Isopentenyl-diphosphate Delta-isomerase OS=Mycobac... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247G20 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247G20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405728 ID=DR405728; Name=DR405728; organism=Citrus sinensis; type=EST; length=775bp
GGGGTTGCCATATTGAGGTCCCAATGTCTACTACTACGCTTTATAACTGC
GCCACAACCAAACTCTGCTCCTCACTAATCAACAACTCTTCTTCTTTCTC
GAAGTCCCGTCTATTTTTCTCCTCTTCCCATTTCGCCCCTAGGGTTTCTT
CGATTCGCAGGCCTCTGTCCTTGGGAGGTGCCTCTCGTTCTAGCTCTTCT
TCTTCTTCCGCTCGCGCAATCAGCACTATGGGTGACGCTACTACTGATGC
CGGCATGGACGCTGTCCAGCGCCGCCTCATGTTTGAAGACGAATGCATTT
TGGTGGATGAGAATGATCGCGTTGTTGGTCATGAAAACAAATACAACTGT
CACTTGATGGAAAAGATTGAGTCTTTGAATTTGCTACACAGAGCCTTCAG
CGTATTTTTGTTTAACTCAAAATATGAGCTACTCCTTCAGCAACGCTCTG
GAACCAAAGTTACCTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCAT
CCTCTGTACCGTGAATCTGAGCTTATTGAGGAGAACGCTCTTGGGGTGAG
GAATGCTGCACAAAGAAAGCTTTTGGATGAGCTGGGCATTTGTGCTGAAG
ATGTGCCAGTTGATGAGTTCACTCCACTGGGTCGCATTCTGTACAAGGCC
CCTTCTGATGGCAAGTGGGGGGAGCATGAACTTGACTACTTACTTTTCAT
TGTCCGAGATGTTAGTGTTAACCCAAATCCTGATGAAGTAGCCGAGTATA
AATATGTCAACCGGGAACAGTTAAA
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