DR405728

Overview
NameDR405728
Unique NameDR405728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DR405728 vs. ExPASy Swiss-Prot
Match: IDI_MYCTA (Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=idi PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 50/161 (31.06%), Postives = 80/161 (49.69%), Query Frame = 3 
Query:  288 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQ 770
            +  +L+++     G  +K   H  +       LH AFS ++F+   +LL+ +R+ TK T+P VWTN+CC HPL  ES         +  A +R+L  ELG+  +   VD   P  R  Y+A       E+E+  +  +  D    PN DEV   ++++ EQ
Sbjct:   12 ERVVLLNDRGDATGVADKATVHTGD-----TPLHLAFSSYVFDLHDQLLITRRAATKRTWPAVWTNSCCGHPLPGES---------LPGAIRRRLAAELGLTPD--RVDLILPGFR--YRAAMADGTVENEICPVYRVQVDQQPRPNSDEVDAIRWLSWEQ 154
[Close]
BLAST of DR405728 vs. ExPASy Swiss-Prot
Match: IDI_MYCBT (Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=idi PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 50/161 (31.06%), Postives = 80/161 (49.69%), Query Frame = 3 
Query:  288 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQ 770
            +  +L+++     G  +K   H  +       LH AFS ++F+   +LL+ +R+ TK T+P VWTN+CC HPL  ES         +  A +R+L  ELG+  +   VD   P  R  Y+A       E+E+  +  +  D    PN DEV   ++++ EQ
Sbjct:   12 ERVVLLNDRGDATGVADKATVHTGD-----TPLHLAFSSYVFDLHDQLLITRRAATKRTWPAVWTNSCCGHPLPGES---------LPGAIRRRLAAELGLTPD--RVDLILPGFR--YRAAMADGTVENEICPVYRVQVDQQPRPNSDEVDAIRWLSWEQ 154
[Close]
BLAST of DR405728 vs. ExPASy Swiss-Prot
Match: IDI_MYCBP (Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=idi PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 50/161 (31.06%), Postives = 80/161 (49.69%), Query Frame = 3 
Query:  288 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQ 770
            +  +L+++     G  +K   H  +       LH AFS ++F+   +LL+ +R+ TK T+P VWTN+CC HPL  ES         +  A +R+L  ELG+  +   VD   P  R  Y+A       E+E+  +  +  D    PN DEV   ++++ EQ
Sbjct:   12 ERVVLLNDRGDATGVADKATVHTGD-----TPLHLAFSSYVFDLHDQLLITRRAATKRTWPAVWTNSCCGHPLPGES---------LPGAIRRRLAAELGLTPD--RVDLILPGFR--YRAAMADGTVENEICPVYRVQVDQQPRPNSDEVDAIRWLSWEQ 154
The following BLAST results are available for this feature:
BLAST of DR405728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IDI_MYCTA5.811e-1131.06Isopentenyl-diphosphate Delta-isomerase OS=Mycobac... [more]
IDI_MYCBT5.811e-1131.06Isopentenyl-diphosphate Delta-isomerase OS=Mycobac... [more]
IDI_MYCBP5.811e-1131.06Isopentenyl-diphosphate Delta-isomerase OS=Mycobac... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247G20 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247G20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405728 ID=DR405728; Name=DR405728; organism=Citrus sinensis; type=EST; length=775bp
GGGGTTGCCATATTGAGGTCCCAATGTCTACTACTACGCTTTATAACTGC
GCCACAACCAAACTCTGCTCCTCACTAATCAACAACTCTTCTTCTTTCTC
GAAGTCCCGTCTATTTTTCTCCTCTTCCCATTTCGCCCCTAGGGTTTCTT
CGATTCGCAGGCCTCTGTCCTTGGGAGGTGCCTCTCGTTCTAGCTCTTCT
TCTTCTTCCGCTCGCGCAATCAGCACTATGGGTGACGCTACTACTGATGC
CGGCATGGACGCTGTCCAGCGCCGCCTCATGTTTGAAGACGAATGCATTT
TGGTGGATGAGAATGATCGCGTTGTTGGTCATGAAAACAAATACAACTGT
CACTTGATGGAAAAGATTGAGTCTTTGAATTTGCTACACAGAGCCTTCAG
CGTATTTTTGTTTAACTCAAAATATGAGCTACTCCTTCAGCAACGCTCTG
GAACCAAAGTTACCTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCAT
CCTCTGTACCGTGAATCTGAGCTTATTGAGGAGAACGCTCTTGGGGTGAG
GAATGCTGCACAAAGAAAGCTTTTGGATGAGCTGGGCATTTGTGCTGAAG
ATGTGCCAGTTGATGAGTTCACTCCACTGGGTCGCATTCTGTACAAGGCC
CCTTCTGATGGCAAGTGGGGGGAGCATGAACTTGACTACTTACTTTTCAT
TGTCCGAGATGTTAGTGTTAACCCAAATCCTGATGAAGTAGCCGAGTATA
AATATGTCAACCGGGAACAGTTAAA
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